Jean M. Carlson - Publications

Affiliations: 
1990- Physics University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
complex systems
Website:
http://www.physics.ucsb.edu/people/jean-carlson

222 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mueller JM, Pritschet L, Santander T, Taylor CM, Grafton ST, Jacobs EG, Carlson JM. Dynamic community detection reveals transient reorganization of functional brain networks across a female menstrual cycle. Network Neuroscience (Cambridge, Mass.). 5: 125-144. PMID 33688609 DOI: 10.1162/netn_a_00169  0.92
2019 Nguyen C, Peetz D, Elbanna AE, Carlson JM. Characterization of fracture in topology-optimized bioinspired networks. Physical Review. E. 100: 042402. PMID 31770939 DOI: 10.1103/Physreve.100.042402  1
2019 Mondal A, Nguyen C, Ma X, Elbanna AE, Carlson JM. Network models for characterization of trabecular bone. Physical Review. E. 99: 042406. PMID 31108725 DOI: 10.1103/Physreve.99.042406  1
2018 Nguyen C, Schlesinger KJ, James TW, James KM, Sah RL, Masuda K, Carlson JM. Novel magnetic resonance technique for characterizing mesoscale structure of trabecular bone. Royal Society Open Science. 5: 180563. PMID 30225048 DOI: 10.1098/Rsos.180563  0.92
2018 Wei K, Cieslak M, Greene C, Grafton ST, Carlson JM. Sensitivity analysis of human brain structural network construction. Network Neuroscience (Cambridge, Mass.). 1: 446-467. PMID 30090874 DOI: 10.1162/NETN_a_00025  0.92
2017 Schlesinger KJ, Turner BO, Grafton ST, Miller MB, Carlson JM. Improving resolution of dynamic communities in human brain networks through targeted node removal. Plos One. 12: e0187715. PMID 29261662 DOI: 10.1371/Journal.Pone.0187715  0.92
2016 Davison EN, Turner BO, Schlesinger KJ, Miller MB, Grafton ST, Bassett DS, Carlson JM. Individual Differences in Dynamic Functional Brain Connectivity across the Human Lifespan. Plos Computational Biology. 12: e1005178. PMID 27880785 DOI: 10.1371/Journal.Pcbi.1005178  0.92
2016 Schlesinger KJ, Turner BO, Lopez BA, Miller MB, Carlson JM. Age-dependent Changes in Task-based Modular Organization of the Human Brain. Neuroimage. PMID 27596025 DOI: 10.1016/J.Neuroimage.2016.09.001  0.92
2016 Nguyen C, Carlson JM. Optimizing Real-Time Vaccine Allocation in a Stochastic SIR Model. Plos One. 11: e0152950. PMID 27043931 DOI: 10.1371/Journal.Pone.0152950  1
2016 Carlson JM, Torrence RD, Vander Hyde MR. Beware the eyes behind the mask: The capture and hold of selective attention by backward masked fearful eyes Motivation and Emotion. 1-8. DOI: 10.1007/S11031-016-9542-1  0.12
2016 Lieou CKC, Elbanna AE, Carlson JM. Dynamic friction in sheared fault gouge: Implications of acoustic vibration on triggering and slow slip Journal of Geophysical Research B: Solid Earth. DOI: 10.1002/2015Jb012741  1
2015 Van Tran G, Chikata T, Carlson JM, Murakoshi H, Nguyen DH, Tamura Y, Akahoshi T, Kuse N, Sakai K, Sakai S, Cobarrubias K, Oka S, Brumme ZL, Van Nguyen K, Takiguchi M, et al. A strong association of HLA-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection. Aids (London, England). PMID 26595539 DOI: 10.1097/QAD.0000000000000969  0.01
2015 Hölzemer A, Thobakgale CF, Jimenez Cruz CA, Garcia-Beltran WF, Carlson JM, van Teijlingen NH, Mann JK, Jaggernath M, Kang SG, Körner C, Chung AW, Schafer JL, Evans DT, Alter G, Walker BD, et al. Selection of an HLA-C*03:04-Restricted HIV-1 p24 Gag Sequence Variant Is Associated with Viral Escape from KIR2DL3+ Natural Killer Cells: Data from an Observational Cohort in South Africa. Plos Medicine. 12: e1001900. PMID 26575988 DOI: 10.1371/Journal.Pmed.1001900  0.01
2015 Kinloch NN, MacMillan DR, Le AQ, Cotton LA, Bangsberg DR, Buchbinder S, Carrington M, Fuchs J, Harrigan PR, Koblin B, Kushel M, Markowitz M, Mayer K, Milloy MJ, Schechter MT, ... ... Carlson JM, et al. Population-level Immune-mediated Adaptation in HIV-1 Polymerase during the North American Epidemic. Journal of Virology. PMID 26559841 DOI: 10.1128/JVI.02353-15  0.01
2015 Carlson JM, Cha J, Fekete T, Greenberg T, Mujica-Parodi LR. Left medial orbitofrontal cortex volume correlates with skydive-elicited euphoric experience. Brain Structure & Function. PMID 26547313 DOI: 10.1007/S00429-015-1139-Z  0.12
2015 Breen MS, Beliakova-Bethell N, Mujica-Parodi LR, Carlson JM, Ensign WY, Woelk CH, Rana BK. Acute psychological stress induces short-term variable immune response. Brain, Behavior, and Immunity. PMID 26476140 DOI: 10.1016/J.Bbi.2015.10.008  0.12
2015 Carlson JM, Hyde ER, Petrosino JF, Manage AB, Primm TP. The host effects of Gambusia affinis with an antibiotic-disrupted microbiome v. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : Cbp. PMID 26475244 DOI: 10.1016/j.cbpc.2015.10.004  0.01
2015 Gildea JJ, Xu P, Carlson JM, Gaglione RT, Bigler Wang D, Kemp BA, Reyes CM, McGrath HE, Carey RM, Jose PA, Felder RA. THE SODIUM-BICARBONATE COTRANSPORTER NBCe2 (SLC4A5) EXPRESSED IN HUMAN RENAL PROXIMAL TUBULES SHOWS INCREASED APICAL EXPRESSION UNDER HIGH SALT CONDITIONS. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. ajpregu.00150.2015. PMID 26447209 DOI: 10.1152/Ajpregu.00150.2015  0.04
2015 Lieou CK, Elbanna AE, Langer JS, Carlson JM. Stick-slip instabilities in sheared granular flow: The role of friction and acoustic vibrations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022209. PMID 26382396 DOI: 10.1103/Physreve.92.022209  1
2015 Bansal A, Mann T, Sterrett S, Peng BJ, Bet A, Carlson JM, Goepfert PA. Enhanced Recognition of HIV-1 Cryptic Epitopes Restricted by HLA Class I Alleles Associated With a Favorable Clinical Outcome. Journal of Acquired Immune Deficiency Syndromes (1999). 70: 1-8. PMID 26322665 DOI: 10.1097/Qai.0000000000000700  0.01
2015 Matthews PC, Beloukas A, Malik A, Carlson JM, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jaggernath M, Jesuthasan G, Jeffery K, Ndung'u T, Goulder PJ, et al. Prevalence and Characteristics of Hepatitis B Virus (HBV) Coinfection among HIV-Positive Women in South Africa and Botswana. Plos One. 10: e0134037. PMID 26218239 DOI: 10.1371/journal.pone.0134037  0.01
2015 Carlson JM, Depetro E, Maxwell J, Harmon-Jones E, Hajcak G. Gender moderates the association between dorsal medial prefrontal cortex volume and depressive symptoms in a subclinical sample. Psychiatry Research. PMID 26166620 DOI: 10.1016/J.Pscychresns.2015.06.005  0.12
2015 Kløverpris HN, McGregor R, McLaren JE, Ladell K, Harndahl M, Stryhn A, Carlson JM, Koofhethile C, Gerritsen B, Ke?mir C, Chen F, Riddell L, Luzzi G, Leslie A, Walker BD, et al. CD8+ TCR Bias and Immunodominance in HIV-1 Infection. Journal of Immunology (Baltimore, Md. : 1950). 194: 5329-45. PMID 25911754 DOI: 10.4049/jimmunol.1400854  0.01
2015 Yuan EC, Alderson DL, Stromberg S, Carlson JM. Optimal vaccination in a stochastic epidemic model of two non-interacting populations. Plos One. 10: e0115826. PMID 25688857 DOI: 10.1371/Journal.Pone.0115826  1
2015 Edlefsen PT, Rolland M, Hertz T, Tovanabutra S, Gartland AJ, deCamp AC, Magaret CA, Ahmed H, Gottardo R, Juraska M, McCoy C, Larsen BB, Sanders-Buell E, Carrico C, Menis S, ... ... Carlson JM, et al. Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial. Plos Computational Biology. 11: e1003973. PMID 25646817 DOI: 10.1371/Journal.Pcbi.1003973  0.01
2015 Curran SA, Carlson JM. The mechanism of soft tissue damage: It is all in the rub. Prosthetics and Orthotics International. 39: 82-4. PMID 25614504 DOI: 10.1177/0309364614565574  0.01
2015 Carlson JM, Le AQ, Shahid A, Brumme ZL. HIV-1 adaptation to HLA: a window into virus-host immune interactions. Trends in Microbiology. 23: 212-24. PMID 25613992 DOI: 10.1016/j.tim.2014.12.008  0.01
2015 Berger CT, Llano A, Carlson JM, Brumme ZL, Brockman MA, Cedeño S, Harrigan PR, Kaufmann DE, Heckerman D, Meyerhans A, Brander C. Immune screening identifies novel T cell targets encoded by antisense reading frames of HIV-1. Journal of Virology. 89: 4015-9. PMID 25589651 DOI: 10.1128/Jvi.03435-14  0.01
2015 Davison EN, Schlesinger KJ, Bassett DS, Lynall ME, Miller MB, Grafton ST, Carlson JM. Brain network adaptability across task states. Plos Computational Biology. 11: e1004029. PMID 25569227 DOI: 10.1371/Journal.Pcbi.1004029  1
2015 Ancheta IB, Carlson JM, Battie CA, Borja-Hart N, Cobb S, Ancheta CV. One size does not fit all: cardiovascular health disparities as a function of ethnicity in Asian-American women. Applied Nursing Research : Anr. 28: 99-105. PMID 25069635 DOI: 10.1016/j.apnr.2014.06.001  0.01
2015 Greenberg T, Carlson JM, Rubin D, Cha J, Mujica-Parodi L. Anticipation of high arousal aversive and positive movie clips engages common and distinct neural substrates. Social Cognitive and Affective Neuroscience. 10: 605-11. PMID 24984958 DOI: 10.1093/Scan/Nsu091  0.12
2015 Carlson JM, Foti D, Harmon-Jones E, Proudfit GH. Midbrain volume predicts fMRI and ERP measures of reward reactivity. Brain Structure & Function. 220: 1861-6. PMID 24549705 DOI: 10.1007/S00429-014-0725-9  0.12
2015 Carlson JM, Mujica-Parodi LR. Facilitated Attentional Orienting and Delayed Disengagement to Conscious and Nonconscious Fearful Faces Journal of Nonverbal Behavior. 39: 69-77. DOI: 10.1007/S10919-014-0185-1  0.12
2014 Payne R, Muenchhoff M, Mann J, Roberts HE, Matthews P, Adland E, Hempenstall A, Huang KH, Brockman M, Brumme Z, Sinclair M, Miura T, Frater J, Essex M, Shapiro R, ... ... Carlson JM, et al. Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence. Proceedings of the National Academy of Sciences of the United States of America. 111: E5393-400. PMID 25453107 DOI: 10.1073/Pnas.1413339111  0.01
2014 Lieou CK, Elbanna AE, Carlson JM. Grain fragmentation in sheared granular flow: weakening effects, energy dissipation, and strain localization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 022203. PMID 25353463 DOI: 10.1103/Physreve.89.022203  1
2014 Dommaraju K, Kijak G, Carlson JM, Larsen BB, Tovanabutra S, Geraghty DE, Deng W, Maust BS, Edlefsen PT, Sanders-Buell E, Ratto-Kim S, deSouza MS, Rerks-Ngarm S, Nitayaphan S, Pitisuttihum P, et al. CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants. Plos One. 9: e111334. PMID 25350851 DOI: 10.1371/Journal.Pone.0111334  0.01
2014 Lieou CK, Elbanna AE, Langer JS, Carlson JM. Shear flow of angular grains: acoustic effects and nonmonotonic rate dependence of volume. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 032204. PMID 25314434 DOI: 10.1103/Physreve.90.032204  1
2014 Lohse C, Bassett DS, Lim KO, Carlson JM. Resolving anatomical and functional structure in human brain organization: identifying mesoscale organization in weighted network representations. Plos Computational Biology. 10: e1003712. PMID 25275860 DOI: 10.1371/Journal.Pcbi.1003712  1
2014 Martin E, Carlson JM, Le AQ, Chopera DR, McGovern R, Rahman MA, Ng C, Jessen H, Kelleher AD, Markowitz M, Allen TM, Milloy MJ, Carrington M, Wainberg MA, Brumme ZL. Early immune adaptation in HIV-1 revealed by population-level approaches. Retrovirology. 11: 64. PMID 25212686 DOI: 10.1186/S12977-014-0064-1  0.01
2014 Mujica-Parodi LR, Carlson JM, Cha J, Rubin D. The fine line between 'brave' and 'reckless': amygdala reactivity and regulation predict recognition of risk. Neuroimage. 103: 1-9. PMID 25175540 DOI: 10.1016/J.Neuroimage.2014.08.038  0.12
2014 Pereyra F, Heckerman D, Carlson JM, Kadie C, Soghoian DZ, Karel D, Goldenthal A, Davis OB, DeZiel CE, Lin T, Peng J, Piechocka A, Carrington M, Walker BD. HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes. Journal of Virology. 88: 12937-48. PMID 25165115 DOI: 10.1128/Jvi.01004-14  0.01
2014 Schlesinger KJ, Stromberg SP, Carlson JM. Coevolutionary immune system dynamics driving pathogen speciation. Plos One. 9: e102821. PMID 25054623 DOI: 10.1371/Journal.Pone.0102821  1
2014 Carlson JM, Schaefer M, Monaco DC, Batorsky R, Claiborne DT, Prince J, Deymier MJ, Ende ZS, Klatt NR, DeZiel CE, Lin TH, Peng J, Seese AM, Shapiro R, Frater J, et al. HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck. Science (New York, N.Y.). 345: 1254031. PMID 25013080 DOI: 10.1126/Science.1254031  0.01
2014 Foti D, Carlson JM, Sauder CL, Proudfit GH. Reward dysfunction in major depression: multimodal neuroimaging evidence for refining the melancholic phenotype. Neuroimage. 101: 50-8. PMID 24996119 DOI: 10.1016/J.Neuroimage.2014.06.058  0.12
2014 Gildea JJ, Seaton JE, Victor KG, Reyes CM, Bigler Wang D, Pettigrew AC, Courtner CE, Shah N, Tran HT, Van Sciver RE, Carlson JM, Felder RA. Exosomal transfer from human renal proximal tubule cells to distal tubule and collecting duct cells. Clinical Biochemistry. 47: 89-94. PMID 24976626 DOI: 10.1016/J.Clinbiochem.2014.06.018  0.04
2014 Hermundstad AM, Brown KS, Bassett DS, Aminoff EM, Frithsen A, Johnson A, Tipper CM, Miller MB, Grafton ST, Carlson JM. Structurally-constrained relationships between cognitive states in the human brain. Plos Computational Biology. 10: e1003591. PMID 24830758 DOI: 10.1371/Journal.Pcbi.1003591  1
2014 Cotton LA, Kuang XT, Le AQ, Carlson JM, Chan B, Chopera DR, Brumme CJ, Markle TJ, Martin E, Shahid A, Anmole G, Mwimanzi P, Nassab P, Penney KA, Rahman MA, et al. Genotypic and functional impact of HIV-1 adaptation to its host population during the North American epidemic. Plos Genetics. 10: e1004295. PMID 24762668 DOI: 10.1371/Journal.Pgen.1004295  0.01
2014 Cha J, Carlson JM, Dedora DJ, Greenberg T, Proudfit GH, Mujica-Parodi LR. Hyper-reactive human ventral tegmental area and aberrant mesocorticolimbic connectivity in overgeneralization of fear in generalized anxiety disorder. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 5855-60. PMID 24760845 DOI: 10.1523/Jneurosci.4868-13.2014  0.12
2014 Klimm F, Bassett DS, Carlson JM, Mucha PJ. Resolving structural variability in network models and the brain. Plos Computational Biology. 10: e1003491. PMID 24675546 DOI: 10.1371/Journal.Pcbi.1003491  1
2014 Cha J, Greenberg T, Carlson JM, Dedora DJ, Hajcak G, Mujica-Parodi LR. Circuit-wide structural and functional measures predict ventromedial prefrontal cortex fear generalization: implications for generalized anxiety disorder. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 4043-53. PMID 24623781 DOI: 10.1523/Jneurosci.3372-13.2014  0.12
2014 Chikata T, Carlson JM, Tamura Y, Borghan MA, Naruto T, Hashimoto M, Murakoshi H, Le AQ, Mallal S, John M, Gatanaga H, Oka S, Brumme ZL, Takiguchi M. Host-specific adaptation of HIV-1 subtype B in the Japanese population. Journal of Virology. 88: 4764-75. PMID 24522911 DOI: 10.1128/JVI.00147-14  0.01
2014 Carlson JM, Alderson DL, Stromberg SP, Bassett DS, Craparo EM, Guiterrez-Villarreal F, Otani T. Measuring and modeling behavioral decision dynamics in collective evacuation. Plos One. 9: e87380. PMID 24520331 DOI: 10.1371/Journal.Pone.0087380  1
2014 Carlson JM, Reinke KS. Attending to the fear in your eyes: facilitated orienting and delayed disengagement. Cognition & Emotion. 28: 1398-406. PMID 24512521 DOI: 10.1080/02699931.2014.885410  0.12
2014 Payne RP, Branch S, Kløverpris H, Matthews PC, Koofhethile CK, Strong T, Adland E, Leitman E, Frater J, Ndung'u T, Hunter E, Haubrich R, Mothe B, Edwards A, Riddell L, ... ... Carlson JM, et al. Differential escape patterns within the dominant HLA-B*57:03-restricted HIV Gag epitope reflect distinct clade-specific functional constraints. Journal of Virology. 88: 4668-78. PMID 24501417 DOI: 10.1128/Jvi.03303-13  0.01
2014 Sunshine J, Kim M, Carlson JM, Heckerman D, Czartoski J, Migueles SA, Maenza J, McElrath MJ, Mullins JI, Frahm N. Increased sequence coverage through combined targeting of variant and conserved epitopes correlates with control of HIV replication. Journal of Virology. 88: 1354-65. PMID 24227851 DOI: 10.1128/Jvi.02361-13  0.01
2014 Carlson JM, Cha J, Harmon-Jones E, Mujica-Parodi LR, Hajcak G. Influence of the BDNF genotype on amygdalo-prefrontal white matter microstructure is linked to nonconscious attention bias to threat. Cerebral Cortex (New York, N.Y. : 1991). 24: 2249-57. PMID 23585520 DOI: 10.1093/Cercor/Bht089  0.12
2014 Carlson JM, Alderson DL, Stromberg SP, Bassett DS, Craparo EM, Guiterrez-Villarreal F, Otani T. The distributions of evacuations as a function of . Plos One. DOI: 10.1371/Journal.Pone.0087380.G007  1
2014 Carlson JM, Alderson DL, Stromberg SP, Bassett DS, Craparo EM, Guiterrez-Villarreal F, Otani T. Participants spent the majority of their time on the Disaster Tab. Plos One. DOI: 10.1371/Journal.Pone.0087380.G005  1
2014 Tofail SAM, Butler J, Gandhi AA, Carlson JM, Lavelle S, Carr S, Tiernan P, Warren G, Kennedy K, Biffi CA, Bassani P, Tuissi A. X-ray visibility and metallurgical features of NiTi shape memory alloy with erbium Materials Letters. 137: 450-454. DOI: 10.1016/j.matlet.2014.09.071  0.01
2014 Gildea JJ, Carlson JM, Schoeffel CD, Carey RM, Felder RA. Corrigendum to "Urinary exosome miRNome analysis and its applications to salt sensitivity of blood pressure" [Clin Biochem 46 (2013) 1131-1134] Clinical Biochemistry. 47: 501. DOI: 10.1016/J.Clinbiochem.2014.01.018  0.04
2014 Elbanna AE, Carlson JM. A two-scale model for sheared fault gouge: Competition between macroscopic disorder and local viscoplasticity Journal of Geophysical Research: Solid Earth. 119: 4841-4859. DOI: 10.1002/2014Jb011001  1
2014 Carlson JM, Carlson KL, Kuykendall BR. A review of the practical capacities and user perception of the sixthsense device Proceedings of the International Conferences On Interfaces and Human Computer Interaction 2014, Game and Entertainment Technologies 2014 and Computer Graphics, Visualization, Computer Vision and Image Processing 2014 - Part of the Multi Conference On Computer Science and Information Systems, McCsis 2014. 61-68.  0.01
2013 Bartha I, Carlson JM, Brumme CJ, McLaren PJ, Brumme ZL, John M, Haas DW, Martinez-Picado J, Dalmau J, López-Galíndez C, Casado C, Rauch A, Günthard HF, Bernasconi E, Vernazza P, et al. A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control. Elife. 2: e01123. PMID 24171102 DOI: 10.7554/Elife.01123  0.01
2013 Adland E, Carlson JM, Paioni P, Kløverpris H, Shapiro R, Ogwu A, Riddell L, Luzzi G, Chen F, Balachandran T, Heckerman D, Stryhn A, Edwards A, Ndung'u T, Walker BD, et al. Nef-specific CD8+ T cell responses contribute to HIV-1 immune control. Plos One. 8: e73117. PMID 24023819 DOI: 10.1371/journal.pone.0073117  0.01
2013 Carlson JM, Cha J, Mujica-Parodi LR. Functional and structural amygdala - anterior cingulate connectivity correlates with attentional bias to masked fearful faces. Cortex; a Journal Devoted to the Study of the Nervous System and Behavior. 49: 2595-600. PMID 23954317 DOI: 10.1016/J.Cortex.2013.07.008  0.12
2013 Lieou CK, Elbanna AE, Carlson JM. Sacrificial bonds and hidden length in biomaterials: a kinetic constitutive description of strength and toughness in bone. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 012703. PMID 23944488 DOI: 10.1103/Physreve.88.012703  1
2013 Brown KS, Kasper R, Giesbrecht B, Carlson JM, Grafton ST. Reproducible paired sources from concurrent EEG-fMRI data using BICAR. Journal of Neuroscience Methods. 219: 205-19. PMID 23933055 DOI: 10.1016/J.Jneumeth.2013.07.012  1
2013 Gildea JJ, Carlson JM, Schoeffel CD, Carey RM, Felder RA. Urinary exosome miRNome analysis and its applications to salt sensitivity of blood pressure. Clinical Biochemistry. 46: 1131-4. PMID 23726803 DOI: 10.1016/J.Clinbiochem.2013.05.052  0.04
2013 Elbanna AE, Carlson JM. Dynamics of polymer molecules with sacrificial bond and hidden length systems: towards a physically-based mesoscopic constitutive law. Plos One. 8: e56118. PMID 23565135 DOI: 10.1371/Journal.Pone.0056118  1
2013 Apps R, Qi Y, Carlson JM, Chen H, Gao X, Thomas R, Yuki Y, Del Prete GQ, Goulder P, Brumme ZL, Brumme CJ, John M, Mallal S, Nelson G, Bosch R, et al. Influence of HLA-C expression level on HIV control. Science (New York, N.Y.). 340: 87-91. PMID 23559252 DOI: 10.1126/Science.1232685  0.01
2013 Bassett DS, Porter MA, Wymbs NF, Grafton ST, Carlson JM, Mucha PJ. Robust detection of dynamic community structure in networks. Chaos (Woodbury, N.Y.). 23: 013142. PMID 23556979 DOI: 10.1063/1.4790830  1
2013 Hermundstad AM, Bassett DS, Brown KS, Aminoff EM, Clewett D, Freeman S, Frithsen A, Johnson A, Tipper CM, Miller MB, Grafton ST, Carlson JM. Structural foundations of resting-state and task-based functional connectivity in the human brain. Proceedings of the National Academy of Sciences of the United States of America. 110: 6169-74. PMID 23530246 DOI: 10.1073/Pnas.1219562110  1
2013 Kløverpris HN, Stryhn A, Harndahl M, Carlson JM, Leslie AJ, Chen F, Riddell L, Mulenga J, Walker BD, Ndung'u T, Buus S, Goulder P. HLA-A*68:02-restricted Gag-specific cytotoxic T lymphocyte responses can drive selection pressure on HIV but are subdominant and ineffective. Aids (London, England). 27: 1717-23. PMID 23525031 DOI: 10.1097/QAD.0b013e32836146cd  0.01
2013 Gildea JJ, Tran HT, Van Sciver RE, Bigler Wang D, Carlson JM, Felder RA. A novel role for c-Myc in G protein-coupled receptor kinase 4 (GRK4) transcriptional regulation in human kidney proximal tubule cells. Hypertension. 61: 1021-7. PMID 23509080 DOI: 10.1161/Hypertensionaha.111.00321  0.04
2013 Stromberg SP, Carlson JM. Diversity of T-cell responses. Physical Biology. 10: 025002. PMID 23492792 DOI: 10.1088/1478-3975/10/2/025002  1
2013 Boutwell CL, Carlson JM, Lin TH, Seese A, Power KA, Peng J, Tang Y, Brumme ZL, Heckerman D, Schneidewind A, Allen TM. Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins. Journal of Virology. 87: 3952-65. PMID 23365420 DOI: 10.1128/Jvi.03233-12  0.01
2013 Bronke C, Almeida CA, McKinnon E, Roberts SG, Keane NM, Chopra A, Carlson JM, Heckerman D, Mallal S, John M. HIV escape mutations occur preferentially at HLA-binding sites of CD8 T-cell epitopes. Aids (London, England). 27: 899-905. PMID 23276808 DOI: 10.1097/QAD.0b013e32835e1616  0.01
2013 Yagita Y, Kuse N, Kuroki K, Gatanaga H, Carlson JM, Chikata T, Brumme ZL, Murakoshi H, Akahoshi T, Pfeifer N, Mallal S, John M, Ose T, Matsubara H, Kanda R, et al. Distinct HIV-1 escape patterns selected by cytotoxic T cells with identical epitope specificity. Journal of Virology. 87: 2253-63. PMID 23236061 DOI: 10.1128/JVI.02572-12  0.01
2013 Nomura S, Hosoya N, Brumme ZL, Brockman MA, Kikuchi T, Koga M, Nakamura H, Koibuchi T, Fujii T, Carlson JM, Heckerman D, Kawana-Tachikawa A, Iwamoto A, Miura T. Significant reductions in Gag-protease-mediated HIV-1 replication capacity during the course of the epidemic in Japan. Journal of Virology. 87: 1465-76. PMID 23152532 DOI: 10.1128/Jvi.02122-12  0.01
2013 Augustus Diggs H, Froeliger B, Carlson JM, Gilbert DG. Smoker-nonsmoker differences in neural response to smoking-related and affective cues: an fMRI investigation. Psychiatry Research. 211: 85-7. PMID 23146252 DOI: 10.1016/J.Pscychresns.2012.06.009  0.01
2013 Greenberg T, Carlson JM, Cha J, Hajcak G, Mujica-Parodi LR. Ventromedial prefrontal cortex reactivity is altered in generalized anxiety disorder during fear generalization. Depression and Anxiety. 30: 242-50. PMID 23139148 DOI: 10.1002/Da.22016  0.12
2013 Greenberg T, Carlson JM, Cha J, Hajcak G, Mujica-Parodi LR. Neural reactivity tracks fear generalization gradients. Biological Psychology. 92: 2-8. PMID 22200657 DOI: 10.1016/J.Biopsycho.2011.12.007  0.12
2012 Brown KS, Grafton ST, Carlson JM. BICAR: a new algorithm for multiresolution spatiotemporal data fusion. Plos One. 7: e50268. PMID 23209693 DOI: 10.1371/Journal.Pone.0050268  1
2012 Prince JL, Claiborne DT, Carlson JM, Schaefer M, Yu T, Lahki S, Prentice HA, Yue L, Vishwanathan SA, Kilembe W, Goepfert P, Price MA, Gilmour J, Mulenga J, Farmer P, et al. Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis. Plos Pathogens. 8: e1003041. PMID 23209412 DOI: 10.1371/Journal.Ppat.1003041  0.01
2012 Matthews PC, Listgarten J, Carlson JM, Payne R, Huang KH, Frater J, Goedhals D, Steyn D, van Vuuren C, Paioni P, Jooste P, Ogwu A, Shapiro R, Mncube Z, Ndung'u T, et al. Co-operative additive effects between HLA alleles in control of HIV-1. Plos One. 7: e47799. PMID 23094091 DOI: 10.1371/journal.pone.0047799  0.01
2012 Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, Le AQ, Chui CK, Cotton LA, Knapp DJ, Riddler SA, Haubrich R, Nelson G, Pfeifer N, Deziel CE, Heckerman D, et al. Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1. Journal of Virology. 86: 13202-16. PMID 23055555 DOI: 10.1128/Jvi.01998-12  0.01
2012 Bassett DS, Alderson DL, Carlson JM. Collective decision dynamics in the presence of external drivers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 036105. PMID 23030978 DOI: 10.1103/Physreve.86.036105  1
2012 Chopera DR, Cotton LA, Zawaira A, Mann JK, Ngandu NK, Ntale R, Carlson JM, Mlisana K, Woodman Z, de Assis Rosa D, Martin E, Miura T, Pereyra F, Walker BD, Gray CM, et al. Intersubtype differences in the effect of a rare p24 gag mutation on HIV-1 replicative fitness. Journal of Virology. 86: 13423-33. PMID 23015721 DOI: 10.1128/Jvi.02171-12  0.01
2012 Rolland M, Edlefsen PT, Larsen BB, Tovanabutra S, Sanders-Buell E, Hertz T, deCamp AC, Carrico C, Menis S, Magaret CA, Ahmed H, Juraska M, Chen L, Konopa P, Nariya S, ... ... Carlson JM, et al. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature. 490: 417-20. PMID 22960785 DOI: 10.1038/Nature11519  0.01
2012 Kløverpris HN, Harndahl M, Leslie AJ, Carlson JM, Ismail N, van der Stok M, Huang KH, Chen F, Riddell L, Steyn D, Goedhals D, van Vuuren C, Frater J, Walker BD, Carrington M, et al. HIV control through a single nucleotide on the HLA-B locus. Journal of Virology. 86: 11493-500. PMID 22896606 DOI: 10.1128/JVI.01020-12  0.01
2012 Zhang SC, Martin E, Shimada M, Godfrey SB, Fricke J, Locastro S, Lai NY, Liebesny P, Carlson JM, Brumme CJ, Ogbechie OA, Chen H, Walker BD, Brumme ZL, Kavanagh DG, et al. Aminopeptidase substrate preference affects HIV epitope presentation and predicts immune escape patterns in HIV-infected individuals. Journal of Immunology (Baltimore, Md. : 1950). 188: 5924-34. PMID 22586036 DOI: 10.4049/Jimmunol.1200219  0.01
2012 Petrovic N, Alderson DL, Carlson JM. Dynamic resource allocation in disaster response: tradeoffs in wildfire suppression. Plos One. 7: e33285. PMID 22514605 DOI: 10.1371/Journal.Pone.0033285  1
2012 Hasan Z, Carlson JM, Gatanaga H, Le AQ, Brumme CJ, Oka S, Brumme ZL, Ueno T. Minor contribution of HLA class I-associated selective pressure to the variability of HIV-1 accessory protein Vpu. Biochemical and Biophysical Research Communications. 421: 291-5. PMID 22503975 DOI: 10.1016/j.bbrc.2012.04.002  0.01
2012 Brockman MA, Chopera DR, Olvera A, Brumme CJ, Sela J, Markle TJ, Martin E, Carlson JM, Le AQ, McGovern R, Cheung PK, Kelleher AD, Jessen H, Markowitz M, Rosenberg E, et al. Uncommon pathways of immune escape attenuate HIV-1 integrase replication capacity. Journal of Virology. 86: 6913-23. PMID 22496233 DOI: 10.1128/Jvi.07133-11  0.01
2012 Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, Ndung'u T, Shapiro R, Frater J, Brumme ZL, Goulder PJ, Heckerman D. Widespread impact of HLA restriction on immune control and escape pathways of HIV-1. Journal of Virology. 86: 5230-43. PMID 22379086 DOI: 10.1128/JVI.06728-11  0.01
2012 Wright JK, Brumme ZL, Julg B, van der Stok M, Mncube Z, Gao X, Carlson JM, Goulder PJ, Walker BD, Brockman MA, Ndung'u T. Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individuals. Journal of Virology. 86: 1273-6. PMID 22090116 DOI: 10.1128/Jvi.06533-11  0.01
2012 Carlson JM, Beacher F, Reinke KS, Habib R, Harmon-Jones E, Mujica-Parodi LR, Hajcak G. Nonconscious attention bias to threat is correlated with anterior cingulate cortex gray matter volume: a voxel-based morphometry result and replication. Neuroimage. 59: 1713-8. PMID 21970990 DOI: 10.1016/J.Neuroimage.2011.09.040  0.12
2012 Carlson JM, Mujica-Parodi LR, Harmon-Jones E, Hajcak G. The orienting of spatial attention to backward masked fearful faces is associated with variation in the serotonin transporter gene. Emotion (Washington, D.C.). 12: 203-7. PMID 21875187 DOI: 10.1037/A0025170  0.12
2012 Keane NM, Roberts SG, Almeida CA, Krishnan T, Chopra A, Demaine E, Laird R, Tschochner M, Carlson JM, Mallal S, Heckerman D, James I, John M. High-avidity, high-IFNγ-producing CD8 T-cell responses following immune selection during HIV-1 infection. Immunology and Cell Biology. 90: 224-34. PMID 21577229 DOI: 10.1038/icb.2011.34  0.01
2012 Petrovic N, Carlson JM. A decision-making framework for wildfire suppression International Journal of Wildland Fire. 21: 927-937. DOI: 10.1071/Wf11140  1
2012 Carlson JM, Dikecligil GN, Greenberg T, Mujica-Parodi LR. Trait reappraisal is associated with resilience to acute psychological stress Journal of Research in Personality. 46: 609-613. DOI: 10.1016/J.Jrp.2012.05.003  0.12
2011 DeDora DJ, Carlson JM, Mujica-Parodi LR. Acute stress eliminates female advantage in detection of ambiguous negative affect. Evolutionary Psychology : An International Journal of Evolutionary Approaches to Psychology and Behavior. 9: 532-42. PMID 22947993 DOI: 10.1177/147470491100900406  0.12
2011 Fekete T, Rubin D, Carlson JM, Mujica-Parodi LR. The NIRS Analysis Package: noise reduction and statistical inference. Plos One. 6: e24322. PMID 21912687 DOI: 10.1371/Journal.Pone.0024322  0.12
2011 Alter G, Heckerman D, Schneidewind A, Fadda L, Kadie CM, Carlson JM, Oniangue-Ndza C, Martin M, Li B, Khakoo SI, Carrington M, Allen TM, Altfeld M. HIV-1 adaptation to NK-cell-mediated immune pressure. Nature. 476: 96-100. PMID 21814282 DOI: 10.1038/Nature10237  0.01
2011 Hermundstad AM, Brown KS, Bassett DS, Carlson JM. Learning, memory, and the role of neural network architecture. Plos Computational Biology. 7: e1002063. PMID 21738455 DOI: 10.1371/Journal.Pcbi.1002063  1
2011 Carlson JM, Foti D, Mujica-Parodi LR, Harmon-Jones E, Hajcak G. Ventral striatal and medial prefrontal BOLD activation is correlated with reward-related electrocortical activity: a combined ERP and fMRI study. Neuroimage. 57: 1608-16. PMID 21624476 DOI: 10.1016/J.Neuroimage.2011.05.037  0.12
2011 Huang KH, Goedhals D, Carlson JM, Brockman MA, Mishra S, Brumme ZL, Hickling S, Tang CS, Miura T, Seebregts C, Heckerman D, Ndung'u T, Walker B, Klenerman P, Steyn D, et al. Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. Plos One. 6: e19018. PMID 21544209 DOI: 10.1371/Journal.Pone.0019018  0.01
2011 Bassett DS, Wymbs NF, Porter MA, Mucha PJ, Carlson JM, Grafton ST. Dynamic reconfiguration of human brain networks during learning. Proceedings of the National Academy of Sciences of the United States of America. 108: 7641-6. PMID 21502525 DOI: 10.1073/Pnas.1018985108  1
2011 Matthews PC, Adland E, Listgarten J, Leslie A, Mkhwanazi N, Carlson JM, Harndahl M, Stryhn A, Payne RP, Ogwu A, Huang KH, Frater J, Paioni P, Kloverpris H, Jooste P, et al. HLA-A*7401-mediated control of HIV viremia is independent of its linkage disequilibrium with HLA-B*5703. Journal of Immunology (Baltimore, Md. : 1950). 186: 5675-86. PMID 21498667 DOI: 10.4049/jimmunol.1003711  0.01
2011 Smallwood J, Brown KS, Tipper C, Giesbrecht B, Franklin MS, Mrazek MD, Carlson JM, Schooler JW. Pupillometric evidence for the decoupling of attention from perceptual input during offline thought. Plos One. 6: e18298. PMID 21464969 DOI: 10.1371/Journal.Pone.0018298  1
2011 Fekete T, Rubin D, Carlson JM, Mujica-Parodi LR. A stand-alone method for anatomical localization of NIRS measurements. Neuroimage. 56: 2080-8. PMID 21459146 DOI: 10.1016/J.Neuroimage.2011.03.068  0.12
2011 Wright JK, Novitsky V, Brockman MA, Brumme ZL, Brumme CJ, Carlson JM, Heckerman D, Wang B, Losina E, Leshwedi M, van der Stok M, Maphumulo L, Mkhwanazi N, Chonco F, Goulder PJ, et al. Influence of Gag-protease-mediated replication capacity on disease progression in individuals recently infected with HIV-1 subtype C. Journal of Virology. 85: 3996-4006. PMID 21289112 DOI: 10.1128/Jvi.02520-10  0.01
2011 Crawford H, Matthews PC, Schaefer M, Carlson JM, Leslie A, Kilembe W, Allen S, Ndung'u T, Heckerman D, Hunter E, Goulder PJ. The hypervariable HIV-1 capsid protein residues comprise HLA-driven CD8+ T-cell escape mutations and covarying HLA-independent polymorphisms. Journal of Virology. 85: 1384-90. PMID 21106744 DOI: 10.1128/Jvi.01879-10  0.01
2011 Bassett DS, Brown JA, Deshpande V, Carlson JM, Grafton ST. Conserved and variable architecture of human white matter connectivity. Neuroimage. 54: 1262-79. PMID 20850551 DOI: 10.1016/J.Neuroimage.2010.09.006  1
2011 Carlson JM, Reinke KS, LaMontagne PJ, Habib R. Backward masked fearful faces enhance contralateral occipital cortical activity for visual targets within the spotlight of attention. Social Cognitive and Affective Neuroscience. 6: 639-45. PMID 20702500 DOI: 10.1093/Scan/Nsq076  0.12
2011 Werch CE, Bian H, Carlson JM, Moore MJ, Diclemente CC, Huang IC, Ames SC, Thombs D, Weiler RM, Pokorny SB. Brief integrative multiple behavior intervention effects and mediators for adolescents. Journal of Behavioral Medicine. 34: 3-12. PMID 20661637 DOI: 10.1007/S10865-010-9281-9  0.01
2011 Carlson JM, Greenberg T, Rubin D, Mujica-Parodi LR. Feeling anxious: anticipatory amygdalo-insular response predicts the feeling of anxious anticipation. Social Cognitive and Affective Neuroscience. 6: 74-81. PMID 20207692 DOI: 10.1093/Scan/Nsq017  0.12
2011 Hermundstad A, Brown K, Bassett D, Carlson J. Structural drivers of function in information processing networks Conference Record - Asilomar Conference On Signals, Systems and Computers. 837-841. DOI: 10.1109/ACSSC.2011.6190125  1
2011 Peterson SH, Moritz MA, Morais ME, Dennison PE, Carlson JM. Modelling long-term fire regimes of southern California shrublands International Journal of Wildland Fire. 20: 1-16. DOI: 10.1071/Wf09102  1
2010 Elam KK, Carlson JM, Dilalla LF, Reinke KS. Emotional faces capture spatial attention in 5-year-old children. Evolutionary Psychology : An International Journal of Evolutionary Approaches to Psychology and Behavior. 8: 754-67. PMID 22947832 DOI: 10.1177/147470491000800415  0.12
2010 Pereyra F, Jia X, McLaren PJ, Telenti A, de Bakker PI, Walker BD, Ripke S, Brumme CJ, Pulit SL, Carrington M, Kadie CM, Carlson JM, Heckerman D, Graham RR, et al. The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science (New York, N.Y.). 330: 1551-7. PMID 21051598 DOI: 10.1126/Science.1195271  0.24
2010 Carlson JM, Mujica-Parodi LR. A disposition to reappraise decreases anterior insula reactivity during anxious anticipation. Biological Psychology. 85: 383-5. PMID 20832448 DOI: 10.1016/J.Biopsycho.2010.08.010  0.12
2010 Rolland M, Carlson JM, Manocheewa S, Swain JV, Lanxon-Cookson E, Deng W, Rousseau CM, Raugi DN, Learn GH, Maust BS, Coovadia H, Ndung'u T, Goulder PJ, Walker BD, Brander C, et al. Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics. Plos One. 5. PMID 20824187 DOI: 10.1371/Journal.Pone.0012463  0.01
2010 Brockman MA, Brumme ZL, Brumme CJ, Miura T, Sela J, Rosato PC, Kadie CM, Carlson JM, Markle TJ, Streeck H, Kelleher AD, Markowitz M, Jessen H, Rosenberg E, Altfeld M, et al. Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. Journal of Virology. 84: 11937-49. PMID 20810731 DOI: 10.1128/Jvi.01086-10  0.01
2010 Wright JK, Brumme ZL, Carlson JM, Heckerman D, Kadie CM, Brumme CJ, Wang B, Losina E, Miura T, Chonco F, van der Stok M, Mncube Z, Bishop K, Goulder PJ, Walker BD, et al. Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters. Journal of Virology. 84: 10820-31. PMID 20702636 DOI: 10.1128/Jvi.01084-10  0.01
2010 Leslie A, Matthews PC, Listgarten J, Carlson JM, Kadie C, Ndung'u T, Brander C, Coovadia H, Walker BD, Heckerman D, Goulder PJ. Additive contribution of HLA class I alleles in the immune control of HIV-1 infection. Journal of Virology. 84: 9879-88. PMID 20660184 DOI: 10.1128/JVI.00320-10  0.01
2010 Carlson JM, Greenberg T, Mujica-Parodi LR. Blind rage? Heightened anger is associated with altered amygdala responses to masked and unmasked fearful faces. Psychiatry Research. 182: 281-3. PMID 20483568 DOI: 10.1016/J.Pscychresns.2010.02.001  0.12
2010 Ames SC, Stevens SR, Werch CE, Carlson JM, Schroeder DR, Kiros GE, Kershaw J, Patten CA, Ebbert JO, Offord KP. The association of alcohol consumption with tobacco use in Black and White college students. Substance Use & Misuse. 45: 1230-44. PMID 20441460 DOI: 10.3109/10826080903554192  0.01
2010 Stromberg SP, Carlson JM. The suppression of immune system disorders by passive attrition. Plos One. 5: e9648. PMID 20300517 DOI: 10.1371/Journal.Pone.0009648  1
2010 John M, Heckerman D, James I, Park LP, Carlson JM, Chopra A, Gaudieri S, Nolan D, Haas DW, Riddler SA, Haubrich R, Mallal S. Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs. Journal of Immunology (Baltimore, Md. : 1950). 184: 4368-77. PMID 20231689 DOI: 10.4049/jimmunol.0903745  0.01
2010 Carlson JM, Reinke KS. Spatial attention-related modulation of the N170 by backward masked fearful faces. Brain and Cognition. 73: 20-7. PMID 20207467 DOI: 10.1016/J.Bandc.2010.01.007  0.12
2010 Berger CT, Carlson JM, Brumme CJ, Hartman KL, Brumme ZL, Henry LM, Rosato PC, Piechocka-Trocha A, Brockman MA, Harrigan PR, Heckerman D, Kaufmann DE, Brander C. Viral adaptation to immune selection pressure by HLA class I-restricted CTL responses targeting epitopes in HIV frameshift sequences. The Journal of Experimental Medicine. 207: 61-75. PMID 20065065 DOI: 10.1084/Jem.20091808  0.01
2010 Brown KS, Ortigue S, Grafton ST, Carlson JM. Improving human brain mapping via joint inversion of brain electrodynamics and the BOLD signal. Neuroimage. 49: 2401-15. PMID 19833215 DOI: 10.1016/J.Neuroimage.2009.10.011  1
2010 Daub EG, Carlson JM. Friction, fracture, and earthquakes Annual Review of Condensed Matter Physics. 1: 397-418. DOI: 10.1146/Annurev-Conmatphys-070909-104025  1
2010 Hermundstad AM, Daub EG, Carlson JM. Energetics of strain localization in a model of seismic slip Journal of Geophysical Research: Solid Earth. 115. DOI: 10.1029/2009Jb006960  1
2010 Daub EG, Carlson JM, Manning ML. Pulse-like, crack-like, and supershear earthquake ruptures with shear strain localization Journal of Geophysical Research: Solid Earth. 115. DOI: 10.1029/2009Jb006388  1
2009 Daub EG, Carlson JM. Stick-slip instabilities and shear strain localization in amorphous materials. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 066113. PMID 20365237 DOI: 10.1103/Physreve.80.066113  1
2009 Brumme ZL, John M, Carlson JM, Brumme CJ, Chan D, Brockman MA, Swenson LC, Tao I, Szeto S, Rosato P, Sela J, Kadie CM, Frahm N, Brander C, Haas DW, et al. HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. Plos One. 4: e6687. PMID 19690614 DOI: 10.1371/Journal.Pone.0006687  0.01
2009 Avila-Rios S, Ormsby CE, Carlson JM, Valenzuela-Ponce H, Blanco-Heredia J, Garrido-Rodriguez D, Garcia-Morales C, Heckerman D, Brumme ZL, Mallal S, John M, Espinosa E, Reyes-Teran G. Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study. Retrovirology. 6: 72. PMID 19664284 DOI: 10.1186/1742-4690-6-72  0.01
2009 Lee B, Nachmanson L, Robertson G, Carlson JM, Heckerman D. PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees. Bioinformatics (Oxford, England). 25: 2611-2. PMID 19633096 DOI: 10.1093/Bioinformatics/Btp454  0.01
2009 Carlson JM, Gilbert DG, Riise H, Rabinovich NE, Sugai C, Froeliger B. Serotonin transporter genotype and depressive symptoms moderate effects of nicotine on spatial working memory. Experimental and Clinical Psychopharmacology. 17: 173-80. PMID 19586232 DOI: 10.1037/A0016384  0.12
2009 Carlson JM, Reinke KS, Habib R. A left amygdala mediated network for rapid orienting to masked fearful faces. Neuropsychologia. 47: 1386-9. PMID 19428403 DOI: 10.1016/J.Neuropsychologia.2009.01.026  0.12
2009 Bowman DM, Balch JK, Artaxo P, Bond WJ, Carlson JM, Cochrane MA, D'Antonio CM, Defries RS, Doyle JC, Harrison SP, Johnston FH, Keeley JE, Krawchuk MA, Kull CA, Marston JB, et al. Fire in the Earth system. Science (New York, N.Y.). 324: 481-4. PMID 19390038 DOI: 10.1126/Science.1163886  1
2009 Manning ML, Daub EG, Langer JS, Carlson JM. Rate-dependent shear bands in a shear-transformation-zone model of amorphous solids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 016110. PMID 19257110 DOI: 10.1103/Physreve.79.016110  1
2009 Wang YE, Li B, Carlson JM, Streeck H, Gladden AD, Goodman R, Schneidewind A, Power KA, Toth I, Frahm N, Alter G, Brander C, Carrington M, Walker BD, Altfeld M, et al. Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1. Journal of Virology. 83: 1845-55. PMID 19036810 DOI: 10.1128/Jvi.01061-08  0.01
2009 Brookings T, Ortigue S, Grafton S, Carlson J. Using ICA and realistic BOLD models to obtain joint EEG/fMRI solutions to the problem of source localization. Neuroimage. 44: 411-20. PMID 18845263 DOI: 10.1016/J.Neuroimage.2008.08.043  1
2009 Hillers G, Carlson JM, Archuleta RJ. Seismicity in a model governed by competing frictional weakening and healing mechanisms Geophysical Journal International. 178: 1363-1383. DOI: 10.1111/J.1365-246X.2009.04217.X  1
2009 Manning ML, Daub EG, Langer JS, Carlson JM. Rate-dependent shear bands in a shear-transformation-zone model of amorphous solids Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 79. DOI: 10.1103/PhysRevE.79.016110  1
2009 Page MT, Custódio S, Archuleta RJ, Carlson JM. Constraining earthquake source inversions with GPS data: 1. Resolution-based removal of artifacts Journal of Geophysical Research: Solid Earth. 114. DOI: 10.1029/2007Jb005449  1
2009 Carlson JM, Fee AL, Reinke KS. Backward masked snakes and guns modulate spatial attention Evolutionary Psychology. 7: 534-544.  0.12
2008 Carlson JM, Brumme ZL, Rousseau CM, Brumme CJ, Matthews P, Kadie C, Mullins JI, Walker BD, Harrigan PR, Goulder PJ, Heckerman D. Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. Plos Computational Biology. 4: e1000225. PMID 19023406 DOI: 10.1371/Journal.Pcbi.1000225  0.01
2008 Gilbert DG, Carlson JM, Riise H, Rabinovich NE, Sugai C, Froeliger B. Effects of nicotine and depressive traits on affective priming of lateralized emotional word identification. Experimental and Clinical Psychopharmacology. 16: 293-300. PMID 18729683 DOI: 10.1037/A0012871  0.12
2008 Carlson JM, Reinke KS. Masked fearful faces modulate the orienting of covert spatial attention. Emotion (Washington, D.C.). 8: 522-9. PMID 18729582 DOI: 10.1037/A0012653  0.12
2008 Miura T, Brockman MA, Brumme CJ, Brumme ZL, Carlson JM, Pereyra F, Trocha A, Addo MM, Block BL, Rothchild AC, Baker BM, Flynn T, Schneidewind A, Li B, Wang YE, et al. Genetic characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes. Journal of Virology. 82: 8422-30. PMID 18562530 DOI: 10.1128/Jvi.00535-08  0.01
2008 Carlson JM, Smith E. MRI study of three novel palladium based alloys Medical Device Materials Iv: Proceedings of the Materials and Processes For Medical Devices Conference 2007. 136-141. DOI: 10.1361/cp2007mpmd136  0.01
2008 Daub EG, Manning ML, Carlson JM. Shear strain localization in elastodynamic rupture simulations Geophysical Research Letters. 35. DOI: 10.1029/2008Gl033835  1
2008 Daub EG, Carlson JM. A constitutive model for fault gouge deformation in dynamic rupture simulations Journal of Geophysical Research: Solid Earth. 113. DOI: 10.1029/2007Jb005377  1
2008 Lois G, Lemaître A, Carlson JM. Momentum transport in granular flows Computers and Mathematics With Applications. 55: 175-183. DOI: 10.1016/J.Camwa.2007.04.004  1
2007 Manning ML, Langer JS, Carlson JM. Strain localization in a shear transformation zone model for amorphous solids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 056106. PMID 18233717 DOI: 10.1103/Physreve.76.056106  1
2007 Lois G, Lemaître A, Carlson JM. Spatial force correlations in granular shear flow. II. Theoretical implications. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 021303. PMID 17930029 DOI: 10.1103/Physreve.76.021303  1
2007 Lois G, Lemaître A, Carlson JM. Spatial force correlations in granular shear flow. I. Numerical evidence. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 021302. PMID 17930028 DOI: 10.1103/Physreve.76.021302  1
2007 Lois G, Carlson JM. Force networks and the dynamic approach to jamming in sheared granular media Epl. 80. DOI: 10.1209/0295-5075/80/58001  1
2007 Manning ML, Langer JS, Carlson JM. Strain localization in a shear transformation zone model for amorphous solids Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 76. DOI: 10.1103/PhysRevE.76.056106  1
2006 Stromberg SP, Carlson J. Robustness and fragility in immunosenescence. Plos Computational Biology. 2: e160. PMID 17121459 DOI: 10.1371/Journal.Pcbi.0020160  1
2006 Page MT, Carlson JM. Methodologies for earthquake hazard assessment: Model uncertainty and the WGCEP-2002 forecast Bulletin of the Seismological Society of America. 96: 1624-1633. DOI: 10.1785/0120050195  1
2006 Lois G, Lemaître A, Carlson JM. Emergence of multi-contact interactions in contact dynamics simulations of granular shear flows Europhysics Letters. 76: 318-324. DOI: 10.1209/Epl/I2005-10605-1  1
2005 Brookings T, Carlson JM, Doyle J. Three mechanisms for power laws on the Cayley tree. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 056120. PMID 16383701 DOI: 10.1103/Physreve.72.056120  1
2005 Lois G, Lemaître A, Carlson JM. Numerical tests of constitutive laws for dense granular flows. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 051303. PMID 16383599 DOI: 10.1103/Physreve.72.051303  1
2005 Moritz MA, Morais ME, Summerell LA, Carlson JM, Doyle J. Wildfires, complexity, and highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America. 102: 17912-17917. PMID 16332964 DOI: 10.1073/Pnas.0508985102  1
2005 Manning M, Carlson JM, Doyle J. Highly optimized tolerance and power laws in dense and sparse resource regimes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 016108. PMID 16090037 DOI: 10.1103/Physreve.72.016108  0.72
2005 Zhou T, Carlson JM, Doyle J. Evolutionary dynamics and highly optimized tolerance Journal of Theoretical Biology. 236: 438-447. PMID 15904934 DOI: 10.1016/J.Jtbi.2005.03.023  1
2005 Manning M, Carlson JM, Doyle J. Highly optimized tolerance and power laws in dense and sparse resource regimes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72. DOI: 10.1103/PhysRevE.72.016108  1
2005 Page MT, Dunham EM, Carlson JM. Distinguishing barriers and asperities in near-source ground motion Journal of Geophysical Research: Solid Earth. 110: 1-10. DOI: 10.1029/2005Jb003736  1
2004 Lemaître A, Carlson J. Boundary lubrication with a glassy interface. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 061611. PMID 15244589 DOI: 10.1103/Physreve.69.061611  0.84
2004 Lemaître A, Carlson J. Boundary lubrication with a glassy interface Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 69: 061611-1-061611-18. DOI: 10.1103/PhysRevE.69.061611  1
2003 Dunham EM, Favreau P, Carlson JM. A supershear transition mechanism for cracks. Science (New York, N.Y.). 299: 1557-9. PMID 12624262 DOI: 10.1126/Science.1080650  1
2002 Reynolds D, Carlson JM, Doyle J. Design degrees of freedom and mechanisms for complexity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 016108. PMID 12241427 DOI: 10.1103/Physreve.66.016108  0.72
2002 Carlson JM, Doyle J. Complexity and robustness Proceedings of the National Academy of Sciences of the United States of America. 99: 2538-2545. PMID 11875207 DOI: 10.1073/Pnas.012582499  1
2002 Zhou T, Carlson JM, Doyle J. Mutation, specialization, and hypersensitivity in highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America. 99: 2049-2054. PMID 11842230 DOI: 10.1073/Pnas.261714399  1
2002 Reynolds D, Carlson JM, Doyle J. Design degrees of freedom and mechanisms for complexity Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 66: 016108/1-016108/18. DOI: 10.1103/PhysRevE.66.016108  1
2001 Robert C, Carlson JM, Doyle J. Highly optimized tolerance in epidemic models incorporating local optimization and regrowth Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 63: 561221-5612213. DOI: 10.1103/Physreve.63.056122  1
2001 Carlson J, Grotzinger JP. Submarine fan environment inferred from turbidite thickness distributions Sedimentology. 48: 1331-1351. DOI: 10.1046/J.1365-3091.2001.00426.X  1
2000 Nielsen SB, Carlson JM. Rupture pulse characterization: Self-healing, self-similar, expanding solutions in a continuum model of fault dynamics Bulletin of the Seismological Society of America. 90: 1480-1497. DOI: 10.1785/0120000021  1
2000 Doyle J, Carlson JM. Power laws, highly optimized tolerance, and generalized source coding Physical Review Letters. 84: 5656-5659. DOI: 10.1103/Physrevlett.84.5656  1
2000 Zhou T, Carlson JM. Dynamics and changing environments in highly optimized tolerance Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 3197-3204. DOI: 10.1103/Physreve.62.3197  1
2000 Nielsen SB, Carlson JM, Olsen KB. Influence of friction and fault geometry on earthquake rupture Journal of Geophysical Research: Solid Earth. 105: 6069-6088. DOI: 10.1029/1999Jb900350  1
2000 Carlson JM, Doyle J. Highly Optimized Tolerance: Robustness and Design in Complex Systems Physical Review Letters. 84: 2529-2532.  1
1999 Carlson JM, Doyle J. Highly optimized tolerance: A mechanism for power laws in designed systems Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: 1412-1427. DOI: 10.1103/Physreve.60.1412  1
1998 Montakhab A, Carlson JM. Avalanches, transport, and local equilibrium in self-organized criticality Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 58: 5608-5619. DOI: 10.1103/Physreve.58.5608  1
1998 Batista AA, Carlson JM. Bifurcations from steady sliding to stick slip in boundary lubrication Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 57: 4986-4996. DOI: 10.1103/Physreve.57.4986  1
1996 Langer JS, Carlson JM, Myers CR, Shaw BE. Slip complexity in dynamic models of earthquake faults Proceedings of the National Academy of Sciences of the United States of America. 93: 3825-3829. PMID 11607671 DOI: 10.1073/Pnas.93.9.3825  1
1996 Carlson JM, Batista AA. Constitutive relation for the friction between lubricated surfaces. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 53: 4153-4165. PMID 9964729 DOI: 10.1103/Physreve.53.4153  1
1995 Sammis I, Carlson JM. Predicting sandpile avalanches Physical Review Letters. 74: 4357. DOI: 10.1103/PhysRevLett.74.4357  1
1995 Carlson JM, Swindle GH. Self-organized criticality: Sandpiles, singularities, and scaling Proceedings of the National Academy of Sciences of the United States of America. 92: 6712-6719. DOI: 10.1073/Pnas.92.15.6712  1
1995 Kossobokov VG, Carlson JM. Active zone size versus activity: a study of different seismicity patterns in the context of the prediction algorithm M8 Journal of Geophysical Research. 100: 6431-6441. DOI: 10.1029/94JB02868  1
1994 Carlson JM, Langer JS, Shaw BE. Dynamics of earthquake faults Reviews of Modern Physics. 66: 657-670. DOI: 10.1103/Revmodphys.66.657  1
1994 Pepke SL, Carlson JM. Predictability of self-organizing systems Physical Review E. 50: 236-242. DOI: 10.1103/Physreve.50.236  1
1994 Montakhab A, Carlson JM, Levy J. Mode-locking hysteresis in the globally coupled model of charge-density waves Physical Review B. 50: 11227-11230. DOI: 10.1103/Physrevb.50.11227  1
1994 Pepke SL, Carlson JM, Shaw BE. Prediction of large events on a dynamical model of a fault Journal of Geophysical Research. 99: 6769-6788. DOI: 10.1029/93Jb03125  1
1993 Carlson JM, Grannan ER, Singh C, Swindle GH. Fluctuations in self-organizing systems Physical Review E. 48: 688-698. DOI: 10.1103/Physreve.48.688  1
1993 Carlson JM, Grannan ER, Swindle GH. Self-organizing systems at finite driving rates Physical Review E. 47: 93-105. DOI: 10.1103/PhysRevE.47.93  1
1993 Carlson JM, Grannan ER, Swindle GH. A limit theorem for tagged particles in a class of self-organizing particle systems Stochastic Processes and Their Applications. 47: 1-16. DOI: 10.1016/0304-4149(93)90091-H  1
1992 Shaw BE, Carlson JM, Langer JS. Patterns of seismic activity preceding large earthquakes Journal of Geophysical Research. 97: 479-488. DOI: 10.1029/91Jb01796  1
1991 Carlson JM, Langer JS, Shaw BE, Tang C. Intrinsic properties of a Burridge-Knopoff model of an earthquake fault. Physical Review. A. 44: 884-897. PMID 9906036 DOI: 10.1103/Physreva.44.884  1
1991 Carlson JM. Two-dimensional model of a fault Physical Review A. 44: 6226-6232. DOI: 10.1103/PhysRevA.44.6226  1
1991 Carlson JM. Time intervals between characteristic earthquakes and correlations with smaller events: an analysis based on a mechanical model of a fault Journal of Geophysical Research. 96: 4255-4267. DOI: 10.1016/0148-9062(91)91149-L  1
1991 Carlson JM, Bird JE. Thermal and strain rate softening in Al-Mg sheet during necking and shear band formation Metallurgical Transactions A. 18: 1154-1156. DOI: 10.1007/BF03325729  0.01
1990 Carlson JM, Chayes JT, Grannan ER, Swindle GH. Self-orgainzed criticality and singular diffusion Physical Review Letters. 65: 2547-2550. DOI: 10.1103/Physrevlett.65.2547  1
1990 Carlson JM, Chayes JT, Grannan ER, Swindle GH. Self-organized criticality in sandpiles: Nature of the critical phenomenon Physical Review A. 42: 2467-2470. DOI: 10.1103/PhysRevA.42.2467  1
1990 Carlson JM, Chayes JT, Sethna JP, Thouless DJ. Bethe lattice spin glass: The effects of a ferromagnetic bias and external fields. II. Magnetized spin-glass phase and the de Almeida-Thouless line Journal of Statistical Physics. 61: 1069-1084. DOI: 10.1007/BF01014365  1
1990 Carlson JM, Chayes JT, Chayes L, Sethna JP, Thouless DJ. Bethe lattice spin glass: The effects of a ferromagnetic bias and external fields. I. Bifurcation analysis Journal of Statistical Physics. 61: 987-1067. DOI: 10.1007/BF01014364  1
1989 Carlson JM, Langer JS. Properties of earthquakes generated by fault dynamics. Physical Review Letters. 62: 2632-2635. PMID 10040041 DOI: 10.1103/Physrevlett.62.2632  1
1989 Carlson JM, Langer JS. Mechanical model of an earthquake fault. Physical Review. A. 40: 6470-6484. PMID 9902044 DOI: 10.1103/Physreva.40.6470  1
1988 Carlson JM, Chayes JT, Chayes L, Sethna JP, Thouless DJ. Critical behavior of the bethe lattice spin glass Epl. 5: 355-360. DOI: 10.1209/0295-5075/6/5/017  1
1988 Carlson JM, Langer SA, Sethna JP. Frustration in modulated phases: Ripples and boojums Epl. 5: 327-331. DOI: 10.1209/0295-5075/5/4/008  1
1988 Carlson JM, Chayes JT, Chayes L, Sethna JP, Thouless DJ. Phase diagram for the Bethe lattice spin glass (abstract) Journal of Applied Physics. 63: 4001. DOI: 10.1063/1.340577  1
1988 Bird JE, Carlson JM. Progressive failure of surface microstructure during sample-scale shearing flow Acta Metallurgica. 36: 2307-2322. DOI: 10.1016/0001-6160(88)90330-6  0.01
1987 Carlson JM, Sethna JP. Theory of the ripple phase in hydrated phospholipid bilayers. Physical Review. A. 36: 3359-3374. PMID 9899255 DOI: 10.1103/PhysRevA.36.3359  1
1987 Bird JE, Newman KE, Narasimhan K, Carlson JM. Heterogeneous initiation and growth of sample-scale shear bands during necking of Al-Mg sheet Acta Metallurgica. 35: 2971-2982. DOI: 10.1016/0001-6160(87)90296-3  0.01
1987 Carlson JM, Bird JE. Development of sample-scale shear bands during necking of ferrite-austenite sheet Acta Metallurgica. 35: 1675-1701. DOI: 10.1016/0001-6160(87)90115-5  0.01
1987 Bird JE, Carlson JM. GEOMETRIC MODELS OF INTERNAL SHAPE CHANGE AS SHEAR BANDS FORM DURING PLANE STRAIN EXTENSION Metallurgical Transactions. a, Physical Metallurgy and Materials Science. 18: 563-579. DOI: 10.1007/BF02649473  0.01
1986 Bird JE, Carlson JM. Shear Band Formation During Sheet Forming Jom. 38: 47-54. DOI: 10.1007/BF03257624  0.01
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