| Year |
Citation |
Score |
| 2023 |
Chakraborty M, Lara AG, Dang A, McCulloch KJ, Rainbow D, Carter D, Ngo LT, Solares E, Said I, Corbett-Detig RB, Gilbert LE, Emerson JJ, Briscoe AD. Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision in butterflies. Proceedings of the National Academy of Sciences of the United States of America. 120: e2301411120. PMID 37552755 DOI: 10.1073/pnas.2301411120 |
0.305 |
|
| 2022 |
Liao Y, Wang J, Zhu Z, Liu Y, Chen J, Zhou Y, Liu F, Lei J, Gaut BS, Cao B, Emerson JJ, Chen C. The 3D architecture of the pepper genome and its relationship to function and evolution. Nature Communications. 13: 3479. PMID 35710823 DOI: 10.1038/s41467-022-31112-x |
0.418 |
|
| 2022 |
Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. Bmc Biology. 20: 96. PMID 35501892 DOI: 10.1186/s12915-022-01314-2 |
0.357 |
|
| 2021 |
Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. Bmc Biology. 19: 28. PMID 33568145 DOI: 10.1186/s12915-021-00963-z |
0.353 |
|
| 2021 |
Liao Y, Zhang X, Chakraborty M, Emerson JJ. Topologically associating domains and their role in the evolution of genome structure and function in . Genome Research. PMID 33563719 DOI: 10.1101/gr.266130.120 |
0.427 |
|
| 2021 |
Chakraborty M, Chang CH, Khost DE, Vedanayagam J, Adrion JR, Liao Y, Montooth KL, Meiklejohn CD, Larracuente AM, Emerson JJ. Evolution of genome structure in the species complex. Genome Research. PMID 33563718 DOI: 10.1101/gr.263442.120 |
0.422 |
|
| 2020 |
Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS, Zhou Y. Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication. Molecular Biology and Evolution. PMID 32681796 DOI: 10.1093/Molbev/Msaa185 |
0.487 |
|
| 2020 |
Heras J, Chakraborty M, Emerson JJ, German DP. Genomic and biochemical evidence of dietary adaptation in a marine herbivorous fish. Proceedings. Biological Sciences. 287: 20192327. PMID 32070255 DOI: 10.1098/Rspb.2019.2327 |
0.417 |
|
| 2019 |
Chakraborty M, Emerson JJ, Macdonald SJ, Long AD. Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits. Nature Communications. 10: 4872. PMID 31653862 DOI: 10.1038/S41467-019-12884-1 |
0.495 |
|
| 2019 |
Emerson JJ. Evolution: A Paradigm Shift in Snake Sex Chromosome Genetics. Current Biology : Cb. 27: R800-R803. PMID 28829965 DOI: 10.1016/J.Cub.2017.06.079 |
0.482 |
|
| 2018 |
Zhang X, Emerson JJ. Inferring Compensatory Evolution of cis- and trans-Regulatory Variation. Trends in Genetics : Tig. PMID 30503570 DOI: 10.1016/J.Tig.2018.11.003 |
0.31 |
|
| 2018 |
Solares EA, Chakraborty M, Miller DE, Kalsow S, Hall K, Perera AG, Emerson JJ, Hawley RS. Rapid Low-Cost Assembly of the Reference Genome Using Low-Coverage, Long-Read Sequencing. G3 (Bethesda, Md.). PMID 30018084 DOI: 10.1534/G3.118.200162 |
0.454 |
|
| 2017 |
Chakraborty M, VanKuren NW, Zhao R, Zhang X, Kalsow S, Emerson JJ. Hidden genetic variation shapes the structure of functional elements in Drosophila. Nature Genetics. PMID 29255259 DOI: 10.1038/S41588-017-0010-Y |
0.712 |
|
| 2017 |
Long M, Emerson JJ. Meiotic Sex Chromosome Inactivation: Compensation by Gene Traffic. Current Biology : Cb. 27: R659-R661. PMID 28697367 DOI: 10.1016/J.Cub.2017.05.077 |
0.635 |
|
| 2016 |
Chakraborty M, Baldwin-Brown JG, Long AD, Emerson JJ. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage. Nucleic Acids Research. PMID 27458204 DOI: 10.1093/Nar/Gkw654 |
0.406 |
|
| 2014 |
Groot AT, Schöfl G, Inglis O, Donnerhacke S, Classen A, Schmalz A, Santangelo RG, Emerson J, Gould F, Schal C, Heckel DG. Within-population variability in a moth sex pheromone blend: genetic basis and behavioural consequences. Proceedings. Biological Sciences / the Royal Society. 281: 20133054. PMID 24500170 DOI: 10.1098/Rspb.2013.3054 |
0.364 |
|
| 2013 |
Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D. Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. Plos Biology. 11: e1001643. PMID 24015111 DOI: 10.1371/Journal.Pbio.1001643 |
0.685 |
|
| 2013 |
Schaefke B, Emerson JJ, Wang TY, Lu MY, Hsieh LC, Li WH. Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast. Molecular Biology and Evolution. 30: 2121-33. PMID 23793114 DOI: 10.1093/Molbev/Mst114 |
0.569 |
|
| 2013 |
Groot AT, Staudacher H, Barthel A, Inglis O, Schöfl G, Santangelo RG, Gebauer-Jung S, Vogel H, Emerson J, Schal C, Heckel DG, Gould F. One quantitative trait locus for intra- and interspecific variation in a sex pheromone. Molecular Ecology. 22: 1065-80. PMID 23294019 DOI: 10.1111/Mec.12171 |
0.336 |
|
| 2012 |
Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. Plos Genetics. 8: e1003080. PMID 23284287 DOI: 10.1371/Journal.Pgen.1003080 |
0.635 |
|
| 2011 |
Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. Plos Genetics. 7: e1002340. PMID 22072977 DOI: 10.1371/Journal.Pgen.1002340 |
0.676 |
|
| 2011 |
Nikaido M, Sasaki T, Emerson JJ, Aibara M, Mzighani SI, Budeba YL, Ngatunga BP, Iwata M, Abe Y, Li WH, Okada N. Genetically distinct coelacanth population off the northern Tanzanian coast. Proceedings of the National Academy of Sciences of the United States of America. 108: 18009-13. PMID 22025696 DOI: 10.1073/Pnas.1115675108 |
0.546 |
|
| 2010 |
Emerson JJ, Li WH. The genetic basis of evolutionary change in gene expression levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2581-90. PMID 20643748 DOI: 10.1098/Rstb.2010.0005 |
0.603 |
|
| 2010 |
Emerson JJ, Hsieh LC, Sung HM, Wang TY, Huang CJ, Lu HH, Lu MY, Wu SH, Li WH. Natural selection on cis and trans regulation in yeasts. Genome Research. 20: 826-36. PMID 20445163 DOI: 10.1101/Gr.101576.109 |
0.585 |
|
| 2008 |
Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science (New York, N.Y.). 320: 1629-31. PMID 18535209 DOI: 10.1126/Science.1158078 |
0.648 |
|
| 2005 |
Cowan AT, Bowman GR, Edwards KF, Emerson JJ, Turkewitz AP. Genetic, genomic, and functional analysis of the granule lattice proteins in Tetrahymena secretory granules. Molecular Biology of the Cell. 16: 4046-60. PMID 15958493 DOI: 10.1091/Mbc.E05-01-0028 |
0.343 |
|
| 2005 |
Chen Y, Emerson JJ, Martin TM. Evolutionary genomics: codon volatility does not detect selection. Nature. 433: E6-7; discussion E7-. PMID 15662371 DOI: 10.1038/Nature03223 |
0.485 |
|
| 2004 |
Betrán E, Emerson JJ, Kaessmann H, Long M. Sex chromosomes and male functions: where do new genes go? Cell Cycle (Georgetown, Tex.). 3: 873-5. PMID 15190200 DOI: 10.4161/Cc.3.7.960 |
0.728 |
|
| 2004 |
Wang W, Thornton K, Emerson JJ, Long M. Nucleotide variation and recombination along the fourth chromosome in Drosophila simulans. Genetics. 166: 1783-94. PMID 15126398 DOI: 10.1534/Genetics.166.4.1783 |
0.716 |
|
| 2004 |
Emerson JJ, Kaessmann H, Betrán E, Long M. Extensive gene traffic on the mammalian X chromosome. Science (New York, N.Y.). 303: 537-40. PMID 14739461 DOI: 10.1126/Science.1090042 |
0.734 |
|
| Show low-probability matches. |
