Christoph Borchers - Publications

Biochemistry and Biophysics University of North Carolina, Chapel Hill, Chapel Hill, NC 

235 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Li FKK, Gale RT, Petrotchenko EV, Borchers CH, Brown ED, Strynadka NCJ. Crystallographic analysis of TarI and TarJ, a cytidylyltransferase and reductase pair for CDP-ribitol synthesis in Staphylococcus aureus wall teichoic acid biogenesis. Journal of Structural Biology. 107733. PMID 33819634 DOI: 10.1016/j.jsb.2021.107733  0.76
2020 Makepeace KAT, Mohammed Y, Rudashevskaya EL, Petrotchenko EV, Vögtle FN, Meisinger C, Sickmann A, Borchers CH. Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker. Molecular & Cellular Proteomics : McP. 19: 624-639. PMID 33451698 DOI: 10.1074/mcp.RA119.001839  0.76
2020 Nikolaev EN, Indeykina MI, Brzhozovskiy AG, Bugrova AE, Kononikhin AS, Starodubtseva NL, Petrotchenko EV, Kovalev GI, Borchers CH, Sukhikh GT. Mass Spectrometric detection of SARS-CoV-2 virus in scrapings of the epithelium of the nasopharynx of infected patients via Nucleocapsid N protein. Journal of Proteome Research. PMID 32786682 DOI: 10.1021/acs.jproteome.0c00412  0.76
2020 Makepeace KAT, Mohammed Y, Rudashevskaya EL, Petrotchenko EV, Voegtle FN, Meisinger C, Sickmann A, Borchers CH. Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinker. Molecular & Cellular Proteomics : McP. PMID 32051233 DOI: 10.1074/mcp.RA119.001839  0.76
2019 Makepeace KAT, Brodie NI, Popov KI, Gudavicius G, Nelson CJ, Petrotchenko EV, Dokholyan NV, Borchers CH. Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations. Journal of Proteomics. 103544. PMID 31683063 DOI: 10.1016/j.jprot.2019.103544  0.76
2019 Popov KI, Makepeace KAT, Petrotchenko EV, Dokholyan NV, Borchers CH. Insight into the Structure of the "Unstructured" Tau Protein. Structure (London, England : 1993). PMID 31628033 DOI: 10.1016/j.str.2019.09.003  0.76
2019 Martínez de Paz A, Khajavi L, Martin H, Claveria-Gimeno R, Tom Dieck S, Cheema MS, Sanchez-Mut JV, Moksa MM, Carles A, Brodie NI, Sheikh TI, Freeman ME, Petrotchenko EV, Borchers CH, Schuman EM, et al. MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2. Epigenetics & Chromatin. 12: 63. PMID 31601272 DOI: 10.1186/S13072-019-0298-1  0.76
2019 Parker CE, Warren Hines MRE, Mocanu V, Greer SF, Borchers CH. Mass Spectrometric Determination of Protein Ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 1934: 191-221. PMID 31256381 DOI: 10.1007/978-1-4939-9055-9_13  0.36
2019 Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658  0.76
2019 Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH. Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations. Plos Computational Biology. 15: e1006859. PMID 30917118 DOI: 10.1371/journal.pcbi.1006859  0.76
2018 Zahedi RP, Parker CE, Borchers CH. Immuno-MALDI-TOF-MS in the Clinic. Clinical Chemistry. PMID 30018057 DOI: 10.1373/clinchem.2018.292136  0.36
2018 Parker CE, Borchers CH. The Special Issue: Clinical Proteomics for Precision Medicine. Proteomics. Clinical Applications. 12. PMID 29521035 DOI: 10.1002/prca.201600144  0.36
2018 Brodie NI, Huguet R, Zhang T, Viner R, Zabrouskov V, Pan J, Petrotchenko EV, Borchers CH. Top-down hydrogen-deuterium exchange analysis of protein structures using ultraviolet photodissociation (UVPD). Analytical Chemistry. PMID 29336549 DOI: 10.1021/acs.analchem.7b03655  0.76
2017 Dilworth D, Upadhyay SK, Bonnafous P, Edoo AB, Bourbigot S, Pesek-Jardim F, Gudavicius G, Serpa JJ, Petrotchenko EV, Borchers CH, Nelson CJ, Mackereth CD. The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module. Nucleic Acids Research. PMID 29036638 DOI: 10.1093/Nar/Gkx852  0.76
2017 Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando A, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, et al. Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma. Journal of Lipid Research. PMID 28986437 DOI: 10.1194/Jlr.M079012  0.36
2017 Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH. Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations. Science Advances. 3: e1700479. PMID 28695211 DOI: 10.1126/sciadv.1700479  0.76
2017 Li H, Han J, Pan J, Liu T, Parker CE, Borchers CH. Current Trends in Quantitative Proteomics -- an update. Journal of Mass Spectrometry : Jms. PMID 28418607 DOI: 10.1002/jms.3932  0.36
2016 Ellard K, Serpa JJ, Petrotchenko EV, Borchers CH, Ausió J. Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones. Biochemistry and Biophysics Reports. 6: 165-171. PMID 28955874 DOI: 10.1016/J.Bbrep.2016.04.002  0.76
2016 Baker TC, Han J, Borchers CH. Recent advancements in matrix-assisted laser desorption/ionization mass spectrometry imaging. Current Opinion in Biotechnology. 43: 62-69. PMID 27690313 DOI: 10.1016/j.copbio.2016.09.003  0.96
2016 Pan J, Zhang S, Borchers CH. Comparative higher-order structure analysis of antibody biosimilars using combined bottom-up and top-down hydrogen-deuterium exchange mass spectrometry. Biochimica Et Biophysica Acta. PMID 27569733 DOI: 10.1016/j.bbapap.2016.08.013  0.96
2016 Sobsey CA, Han J, Lin K, Swardfager W, Levitt A, Borchers CH. Development and evaluation of a liquid chromatography-mass spectrometry method for rapid, accurate quantitation of malondialdehyde in human plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1029: 205-212. PMID 27437618 DOI: 10.1016/j.jchromb.2016.07.013  0.96
2016 Han J, Lin K, Sequria C, Yang J, Borchers CH. Quantitation of low molecular weight sugars by chemical derivatization-liquid chromatography/multiple-reaction monitoring/mass spectrometry. Electrophoresis. PMID 27120558 DOI: 10.1002/elps.201600150  0.96
2016 Brodie NI, Petrotchenko EV, Borchers CH. The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures. Journal of Proteomics. PMID 26931439 DOI: 10.1016/j.jprot.2016.02.024  0.96
2016 Groitl B, Horowitz S, Makepeace KA, Petrotchenko EV, Borchers CH, Reichmann D, Bardwell JC, Jakob U. Protein unfolding as a switch from self-recognition to high-affinity client binding. Nature Communications. 7: 10357. PMID 26787517 DOI: 10.1038/Ncomms10357  0.76
2016 Wang X, Han J, Hardie DB, Yang J, Borchers CH. The use of matrix coating assisted by an electric field (MCAEF) to enhance mass spectrometric imaging of human prostate cancer biomarkers. Journal of Mass Spectrometry : Jms. 51: 86-95. PMID 26757076 DOI: 10.1002/jms.3728  0.96
2016 Pan J, Zhang S, Chou A, Borchers CH. Higher-order structural interrogation of antibodies using middle-down hydrogen/deuterium exchange mass spectrometry Chemical Science. 7: 1480-1486. DOI: 10.1039/c5sc03420e  0.96
2016 Ellard K, Serpa JJ, Petrotchenko EV, Borchers CH, Ausió J. Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones Biochemistry and Biophysics Reports. 6: 165-171. DOI: 10.1016/j.bbrep.2016.04.002  0.76
2015 Szabat M, Page MM, Panzhinskiy E, Skovsø S, Mojibian M, Fernandez-Tajes J, Bruin JE, Bround MJ, Lee JT, Xu EE, Taghizadeh F, O'Dwyer S, van de Bunt M, Moon KM, Sinha S, ... ... Borchers CH, et al. Reduced Insulin Production Relieves Endoplasmic Reticulum Stress and Induces β Cell Proliferation. Cell Metabolism. PMID 26626461 DOI: 10.1016/J.Cmet.2015.10.016  0.96
2015 Parker CE, Borchers CH. Editorial. Methods (San Diego, Calif.). 89: 1-3. PMID 26552894 DOI: 10.1016/j.ymeth.2015.10.010  0.96
2015 Penn AM, Lu L, Chambers AG, Balshaw RF, Morrison JL, Votova K, Wood E, Smith DS, Lesperance M, Del Zoppo GJ, Borchers CH. Exploring phlebotomy technique as a pre-analytical factor in proteomic analyses by mass spectrometry. Genome / National Research Council Canada = Genome / Conseil National De Recherches Canada. 1-8. PMID 26484650 DOI: 10.1139/gen-2015-0036  0.96
2015 Chambers AG, Percy AJ, Yang J, Borchers CH. Multiple Reaction Monitoring Enables Precise Quantification of 97 Proteins in Dried Blood Spots. Molecular & Cellular Proteomics : McP. 14: 3094-104. PMID 26342038 DOI: 10.1074/mcp.O115.049957  0.96
2015 Mohammed Y, Borchers CH. An extensive library of surrogate peptides for all human proteins. Journal of Proteomics. 129: 93-7. PMID 26232110 DOI: 10.1016/j.jprot.2015.07.025  0.96
2015 Petrotchenko EV, Borchers CH. HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments. Journal of the American Society For Mass Spectrometry. 26: 1895-8. PMID 26162650 DOI: 10.1007/s13361-015-1213-z  0.96
2015 Horvatovich P, Lundberg EK, Chen YJ, Sung TY, He F, Nice EC, Goode RJ, Yu S, Ranganathan S, Baker MS, Domont GB, Velasquez E, Li D, Liu S, Wang Q, ... ... Borchers CH, et al. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project. Journal of Proteome Research. PMID 26076068 DOI: 10.1021/Pr5013009  0.96
2015 Pan J, Zhang S, Chou A, Hardie DB, Borchers CH. Fast Comparative Structural Characterization of Intact Therapeutic Antibodies Using Hydrogen-Deuterium Exchange and Electron Transfer Dissociation. Analytical Chemistry. 87: 5884-90. PMID 25927482 DOI: 10.1021/ac504809r  0.96
2015 Percy AJ, Yang J, Hardie DB, Chambers AG, Tamura-Wells J, Borchers CH. Precise quantitation of 136 urinary proteins by LC/MRM-MS using stable isotope labeled peptides as internal standards for biomarker discovery and/or verification studies. Methods (San Diego, Calif.). 81: 24-33. PMID 25858257 DOI: 10.1016/j.ymeth.2015.04.001  0.96
2015 Jamnik J, García-Bailo B, Borchers CH, El-Sohemy A. Gluten Intake Is Positively Associated with Plasma α2-Macroglobulin in Young Adults. The Journal of Nutrition. 145: 1256-62. PMID 25855121 DOI: 10.3945/Jn.115.212829  0.96
2015 Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, et al. Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis. Journal of Proteome Research. 14: 2278-86. PMID 25807371 DOI: 10.1021/acs.jproteome.5b00053  0.96
2015 Tremlett H, Dai DL, Hollander Z, Kapanen A, Aziz T, Wilson-McManus JE, Tebbutt SJ, Borchers CH, Oger J, Cohen Freue GV. Serum proteomics in multiple sclerosis disease progression. Journal of Proteomics. 118: 2-11. PMID 25753122 DOI: 10.1016/j.jprot.2015.02.018  0.96
2015 Makepeace KA, Serpa JJ, Petrotchenko EV, Borchers CH. Comprehensive identification of disulfide bonds using non-specific proteinase K digestion and CID-cleavable crosslinking analysis methodology for Orbitrap LC/ESI-MS/MS data. Methods (San Diego, Calif.). 89: 74-8. PMID 25752848 DOI: 10.1016/j.ymeth.2015.02.021  0.96
2015 Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Ghosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, ... ... Borchers CH, et al. Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma. Molecular & Cellular Proteomics : McP. PMID 25693799 DOI: 10.1074/Mcp.M114.047050  0.96
2015 Solomonson M, Setiaputra D, Makepeace KA, Lameignere E, Petrotchenko EV, Conrady DG, Bergeron JR, Vuckovic M, DiMaio F, Borchers CH, Yip CK, Strynadka NC. Structure of EspB from the ESX-1 type VII secretion system and insights into its export mechanism. Structure (London, England : 1993). 23: 571-83. PMID 25684576 DOI: 10.1016/J.Str.2015.01.002  0.96
2015 Geisler C, Gaisa NT, Pfister D, Fuessel S, Kristiansen G, Braunschweig T, Gostek S, Beine B, Diehl HC, Jackson AM, Borchers CH, Heidenreich A, Meyer HE, Knüchel R, Henkel C. Identification and validation of potential new biomarkers for prostate cancer diagnosis and prognosis using 2D-DIGE and MS. Biomed Research International. 2015: 454256. PMID 25667921 DOI: 10.1155/2015/454256  0.96
2015 Plaschka C, Larivière L, Wenzeck L, Seizl M, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P. Architecture of the RNA polymerase II-Mediator core initiation complex. Nature. 518: 376-80. PMID 25652824 DOI: 10.1038/Nature14229  0.96
2015 Mohammed Y, Percy AJ, Chambers AG, Borchers CH. Qualis-SIS: automated standard curve generation and quality assessment for multiplexed targeted quantitative proteomic experiments with labeled standards. Journal of Proteome Research. 14: 1137-46. PMID 25546269 DOI: 10.1021/pr5010955  0.96
2015 Han J, Liu Y, Wang R, Yang J, Ling V, Borchers CH. Metabolic profiling of bile acids in human and mouse blood by LC-MS/MS in combination with phospholipid-depletion solid-phase extraction. Analytical Chemistry. 87: 1127-36. PMID 25496250 DOI: 10.1021/Ac503816U  0.96
2015 Han J, Lin K, Sequeira C, Borchers CH. An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography-tandem mass spectrometry. Analytica Chimica Acta. 854: 86-94. PMID 25479871 DOI: 10.1016/j.aca.2014.11.015  0.96
2015 Popp R, Malmström D, Chambers AG, Lin D, Camenzind AG, van der Gugten JG, Holmes DT, Pugia M, Jaremek M, Cornett S, Suckau D, Borchers CH. An automated assay for the clinical measurement of plasma renin activity by immuno-MALDI (iMALDI). Biochimica Et Biophysica Acta. 1854: 547-58. PMID 25461795 DOI: 10.1016/j.bbapap.2014.10.008  0.96
2015 Brodie NI, Makepeace KA, Petrotchenko EV, Borchers CH. Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure. Journal of Proteomics. 118: 12-20. PMID 25192908 DOI: 10.1016/j.jprot.2014.08.012  0.96
2015 Han J, Borchers CH. Chemical derivatization to enhance metabolomic analysis by LC/ESI-MS Advanced Lc-Ms Applications in Metabolomics. 6-21. DOI: 10.4155/9781910419441.fseb2013.13.80  0.96
2015 Han J, Parker CE, Borchers CH. Foreword Advanced Lc-Ms Applications in Metabolomics. 2-4. DOI: 10.4155/9781910419441.14.234  0.36
2015 Han J, Parker CE, Borchers CH. Advanced LC-MS applications in metabolomics Advanced Lc-Ms Applications in Metabolomics. 1-109. DOI: 10.4155/9781910419441  0.36
2015 Wang X, Han J, Yang J, Pan J, Borchers CH. Matrix coating assisted by an electric field (MCAEF) for enhanced tissue imaging by MALDI-MS Chemical Science. 6: 729-738. DOI: 10.1039/c4sc01850h  0.96
2015 Brown EM, Wlodarska M, Willing BP, Vonaesch P, Han J, Reynolds LA, Arrieta MC, Uhrig M, Scholz R, Partida O, Borchers CH, Sansonetti PJ, Finlay BB. Diet and specific microbial exposure trigger features of environmental enteropathy in a novel murine model Nature Communications. 6. DOI: 10.1038/ncomms8806  0.96
2015 Percy AJ, Tamura-Wells J, Albar JP, Aloria K, Amirkhani A, Araujo GDT, Arizmendi JM, Blanco FJ, Canals F, Cho JY, Colomé-Calls N, Corrales FJ, Domont G, Espadas G, Fernandez-Puente P, ... ... Borchers CH, et al. Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment Eupa Open Proteomics. 8: 6-15. DOI: 10.1016/j.euprot.2015.06.001  0.96
2014 Petrotchenko EV, Makepeace KA, Borchers CH. DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 8.18.1-19. PMID 25501944 DOI: 10.1002/0471250953.bi0818s48  0.76
2014 Yi Y, Gibson J, Birks J, Han J, Borchers CH. Comment on "Profiling oil sands mixtures from industrial developments and natural groundwaters for source identification". Environmental Science & Technology. 48: 11013-4. PMID 25184536 DOI: 10.1021/es503498p  0.96
2014 Pan J, Zhang S, Parker CE, Borchers CH. Subzero temperature chromatography and top-down mass spectrometry for protein higher-order structure characterization: method validation and application to therapeutic antibodies. Journal of the American Chemical Society. 136: 13065-71. PMID 25152011 DOI: 10.1021/ja507880w  0.96
2014 Petrotchenko EV, Borchers CH. Modern mass spectrometry-based structural proteomics. Advances in Protein Chemistry and Structural Biology. 95: 193-213. PMID 24985773 DOI: 10.1016/B978-0-12-800453-1.00006-3  0.96
2014 Petrotchenko EV, Serpa JJ, Makepeace KA, Brodie NI, Borchers CH. (14)N(15)N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using (15)N metabolically labeled proteins. Journal of Proteomics. 109: 104-10. PMID 24972318 DOI: 10.1016/j.jprot.2014.06.014  0.96
2014 Percy AJ, Yang J, Chambers AG, Simon R, Hardie DB, Borchers CH. Multiplexed MRM with Internal Standards for Cerebrospinal Fluid Candidate Protein Biomarker Quantitation. Journal of Proteome Research. PMID 24911472 DOI: 10.1021/pr500317d  0.96
2014 Petrotchenko EV, Borchers CH. Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data. Proteomics. 14: 1987-9. PMID 24895266 DOI: 10.1002/pmic.201300486  0.96
2014 Gudavicius G, Dilworth D, Serpa JJ, Sessler N, Petrotchenko EV, Borchers CH, Nelson CJ. The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit. Rna (New York, N.Y.). 20: 1014-22. PMID 24840943 DOI: 10.1261/rna.042648.113  0.96
2014 Petrotchenko EV, Makepeace KA, Serpa JJ, Borchers CH. Analysis of protein structure by cross-linking combined with mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1156: 447-63. PMID 24792007 DOI: 10.1007/978-1-4939-0685-7_30  0.96
2014 Percy AJ, Simon R, Chambers AG, Borchers CH. Enhanced sensitivity and multiplexing with 2D LC/MRM-MS and labeled standards for deeper and more comprehensive protein quantitation. Journal of Proteomics. 106: 113-24. PMID 24769237 DOI: 10.1016/j.jprot.2014.04.024  0.96
2014 Mohammed Y, DomaÅ„ski D, Jackson AM, Smith DS, Deelder AM, Palmblad M, Borchers CH. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics. 106: 151-61. PMID 24769191 DOI: 10.1016/j.jprot.2014.04.018  0.96
2014 El Magraoui F, Eisenacher M, Schrötter A, Kuhlmann K, Heinsen H, Andrén P, Nilsson P, Häggmark A, Schmitz G, Verhaert P, Borchers C, Yoo JS, Lee BH, Meyer HE, Grinberg LT. Developing new methods to answer old and new questions in neurodegenerative diseases: 21(st) Workshop of the HUPO Brain Proteome Project (HBPP) 23-24 January 2014, Honolulu, Hawaii. Proteomics. 14: 1308-10. PMID 24753468 DOI: 10.1002/Pmic.201470083  0.96
2014 Parker CE, Borchers CH. Mass spectrometry based biomarker discovery, verification, and validation--quality assurance and control of protein biomarker assays. Molecular Oncology. 8: 840-58. PMID 24713096 DOI: 10.1016/j.molonc.2014.03.006  0.96
2014 Dang X, Scotcher J, Wu S, Chu RK, Tolić N, Ntai I, Thomas PM, Fellers RT, Early BP, Zheng Y, Durbin KR, Leduc RD, Wolff JJ, Thompson CJ, Pan J, ... ... Borchers CH, et al. The first pilot project of the consortium for top-down proteomics: a status report. Proteomics. 14: 1130-40. PMID 24644084 DOI: 10.1002/Pmic.201300438  0.96
2014 Pan J, Borchers CH. Top-down mass spectrometry and hydrogen/deuterium exchange for comprehensive structural characterization of interferons: implications for biosimilars. Proteomics. 14: 1249-58. PMID 24574185 DOI: 10.1002/pmic.201300341  0.96
2014 Quan S, Wang L, Petrotchenko EV, Makepeace KA, Horowitz S, Yang J, Zhang Y, Borchers CH, Bardwell JC. Super Spy variants implicate flexibility in chaperone action. Elife. 3: e01584. PMID 24497545 DOI: 10.7554/Elife.01584  0.96
2014 Ichu TA, Han J, Borchers CH, Lesperance M, Helbing CC. Metabolomic insights into system-wide coordination of vertebrate metamorphosis. Bmc Developmental Biology. 14: 5. PMID 24495308 DOI: 10.1186/1471-213X-14-5  0.96
2014 Chambers AG, Percy AJ, Simon R, Borchers CH. MRM for the verification of cancer biomarker proteins: recent applications to human plasma and serum. Expert Review of Proteomics. 11: 137-48. PMID 24476379 DOI: 10.1586/14789450.2014.877346  0.96
2014 Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Molecular & Cellular Proteomics : McP. 13: 907-17. PMID 24443746 DOI: 10.1074/Mcp.M113.036095  0.96
2014 Yassine HN, Jackson AM, Borges CR, Billheimer D, Koh H, Smith D, Reaven P, Lau SS, Borchers CH. The application of multiple reaction monitoring and multi-analyte profiling to HDL proteins. Lipids in Health and Disease. 13: 8. PMID 24397693 DOI: 10.1186/1476-511X-13-8  0.96
2014 Petrotchenko EV, Serpa JJ, Cabecinha AN, Lesperance M, Borchers CH. "Out-gel" tryptic digestion procedure for chemical cross-linking studies with mass spectrometric detection. Journal of Proteome Research. 13: 527-35. PMID 24354799 DOI: 10.1021/Pr400710Q  0.96
2014 Wang X, Han J, Pan J, Borchers CH. Comprehensive imaging of porcine adrenal gland lipids by MALDI-FTMS using quercetin as a matrix. Analytical Chemistry. 86: 638-46. PMID 24341451 DOI: 10.1021/ac404044k  0.96
2014 Serpa JJ, Makepeace KA, Borchers TH, Wishart DS, Petrotchenko EV, Borchers CH. Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates. Journal of Proteomics. 100: 160-6. PMID 24316355 DOI: 10.1016/j.jprot.2013.11.020  0.96
2014 Houston S, Russell S, Hof R, Roberts AK, Cullen P, Irvine K, Smith DS, Borchers CH, Tonkin ML, Boulanger MJ, Cameron CE. The multifunctional role of the pallilysin-associated Treponema pallidum protein, Tp0750, in promoting fibrinolysis and extracellular matrix component degradation. Molecular Microbiology. 91: 618-34. PMID 24303899 DOI: 10.1111/Mmi.12482  0.96
2014 Borchers CH, Kast J, Foster LJ, Siu KW, Overall CM, Binkowski TA, Hildebrand WH, Scherer A, Mansoor M, Keown PA. The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies. Journal of Proteomics. 100: 60-7. PMID 23933161 DOI: 10.1016/J.Jprot.2013.08.001  0.96
2014 Percy AJ, Chambers AG, Yang J, Hardie DB, Borchers CH. Advances in multiplexed MRM-based protein biomarker quantitation toward clinical utility. Biochimica Et Biophysica Acta. 1844: 917-26. PMID 23806606 DOI: 10.1016/j.bbapap.2013.06.008  0.96
2014 Parker CE, Domanski D, Percy AJ, Chambers AG, Camenzind AG, Smith DS, Borchers CH. Mass spectrometry in high-throughput clinical biomarker assays: multiple reaction monitoring. Topics in Current Chemistry. 336: 117-37. PMID 22886709 DOI: 10.1007/128_2012_353  0.96
2013 Le CH, Han J, Borchers CH. Dithranol as a matrix for matrix assisted laser desorption/ionization imaging on a fourier transform ion cyclotron resonance mass spectrometer. Journal of Visualized Experiments : Jove. e50733. PMID 24300588 DOI: 10.3791/50733  0.96
2013 Percy AJ, Parker CE, Borchers CH. Pre-analytical and analytical variability in absolute quantitative MRM-based plasma proteomic studies. Bioanalysis. 5: 2837-56. PMID 24256362 DOI: 10.4155/bio.13.245  0.96
2013 Percy AJ, Byrns S, Chambers AG, Borchers CH. Targeted quantitation of CVD-linked plasma proteins for biomarker verification and validation. Expert Review of Proteomics. 10: 567-78. PMID 24206229 DOI: 10.1586/14789450.2013.856763  0.96
2013 Eckle T, Brodsky K, Bonney M, Packard T, Han J, Borchers CH, Mariani TJ, Kominsky DJ, Mittelbronn M, Eltzschig HK. HIF1A reduces acute lung injury by optimizing carbohydrate metabolism in the alveolar epithelium. Plos Biology. 11: e1001665. PMID 24086109 DOI: 10.1371/journal.pbio.1001665  0.96
2013 Larivière L, Plaschka C, Seizl M, Petrotchenko EV, Wenzeck L, Borchers CH, Cramer P. Model of the Mediator middle module based on protein cross-linking. Nucleic Acids Research. 41: 9266-73. PMID 23939621 DOI: 10.1093/nar/gkt704  0.76
2013 Percy AJ, Chambers AG, Yang J, Jackson AM, Domanski D, Burkhart J, Sickmann A, Borchers CH. Method and platform standardization in MRM-based quantitative plasma proteomics. Journal of Proteomics. 95: 66-76. PMID 23933160 DOI: 10.1016/j.jprot.2013.07.026  0.96
2013 Chambers AG, Percy AJ, Hardie DB, Borchers CH. Comparison of proteins in whole blood and dried blood spot samples by LC/MS/MS. Journal of the American Society For Mass Spectrometry. 24: 1338-45. PMID 23821375 DOI: 10.1007/s13361-013-0678-x  0.96
2013 Shah B, Reid JD, Kuzyk MA, Parker CE, Borchers CH. Developing an iMALDI method. Methods in Molecular Biology (Clifton, N.J.). 1023: 97-120. PMID 23765621 DOI: 10.1007/978-1-4614-7209-4_6  0.96
2013 Kuzyk MA, Parker CE, Domanski D, Borchers CH. Development of MRM-based assays for the absolute quantitation of plasma proteins. Methods in Molecular Biology (Clifton, N.J.). 1023: 53-82. PMID 23765619 DOI: 10.1007/978-1-4614-7209-4_4  0.96
2013 Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, ... ... Borchers CH, et al. Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Molecular & Cellular Proteomics : McP. 12: 2623-39. PMID 23689285 DOI: 10.1074/Mcp.M112.027078  0.96
2013 Han J, Tschernutter V, Yang J, Eckle T, Borchers CH. Analysis of selected sugars and sugar phosphates in mouse heart tissue by reductive amination and liquid chromatography-electrospray ionization mass spectrometry. Analytical Chemistry. 85: 5965-73. PMID 23682691 DOI: 10.1021/ac400769g  0.96
2013 Headley JV, Peru KM, Mohamed MH, Frank RA, Martin JW, Hazewinkel RR, Humphries D, Gurprasad NP, Hewitt LM, Muir DC, Lindeman D, Strub R, Young RF, Grewer DM, Whittal RM, ... ... Borchers CH, et al. Chemical fingerprinting of naphthenic acids and oil sands process waters-A review of analytical methods for environmental samples. Journal of Environmental Science and Health. Part a, Toxic/Hazardous Substances & Environmental Engineering. 48: 1145-63. PMID 23647107 DOI: 10.1080/10934529.2013.776332  0.96
2013 Cohen Freue GV, Meredith A, Smith D, Bergman A, Sasaki M, Lam KK, Hollander Z, Opushneva N, Takhar M, Lin D, Wilson-McManus J, Balshaw R, Keown PA, Borchers CH, McManus B, et al. Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation. Plos Computational Biology. 9: e1002963. PMID 23592955 DOI: 10.1371/journal.pcbi.1002963  0.96
2013 Percy AJ, Chambers AG, Yang J, Borchers CH. Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma. Proteomics. 13: 2202-15. PMID 23592487 DOI: 10.1002/pmic.201200316  0.96
2013 Percy AJ, Chambers AG, Parker CE, Borchers CH. Absolute quantitation of proteins in human blood by multiplexed multiple reaction monitoring mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1000: 167-89. PMID 23585092 DOI: 10.1007/978-1-62703-405-0_13  0.96
2013 Han J, Gagnon S, Eckle T, Borchers CH. Metabolomic analysis of key central carbon metabolism carboxylic acids as their 3-nitrophenylhydrazones by UPLC/ESI-MS. Electrophoresis. 34: 2891-900. PMID 23580203 DOI: 10.1002/elps.201200601  0.96
2013 Nyakas A, Han J, Peru KM, Headley JV, Borchers CH. Comprehensive analysis of oil sands processed water by direct-infusion Fourier-transform ion cyclotron resonance mass spectrometry with and without offline UHPLC sample prefractionation. Environmental Science & Technology. 47: 4471-9. PMID 23566025 DOI: 10.1021/es400813s  0.96
2013 Eisen D, Planatscher H, Hardie DB, Kraushaar U, Pynn CJ, Stoll D, Borchers C, Joos TO, Poetz O. G protein-coupled receptor quantification using peptide group-specific enrichment combined with internal peptide standard reporter calibration. Journal of Proteomics. 90: 85-95. PMID 23500134 DOI: 10.1016/J.Jprot.2013.02.017  0.96
2013 García-Bailo B, Jamnik J, Da Costa LA, Borchers CH, Badawi A, El-Sohemy A. Plasma 25-hydroxyvitamin D, hormonal contraceptive use, and the plasma proteome in Caucasian, East Asian, and South Asian young adults. Journal of Proteome Research. 12: 1797-807. PMID 23427916 DOI: 10.1021/Pr4001042  0.96
2013 Pan J, Borchers CH. Top-down structural analysis of posttranslationally modified proteins by Fourier transform ion cyclotron resonance-MS with hydrogen/deuterium exchange and electron capture dissociation. Proteomics. 13: 974-81. PMID 23319428 DOI: 10.1002/pmic.201200246  0.96
2013 Percy AJ, Chambers AG, Smith DS, Borchers CH. Standardized protocols for quality control of MRM-based plasma proteomic workflows. Journal of Proteome Research. 12: 222-33. PMID 23245390 DOI: 10.1021/pr300893w  0.96
2013 Chambers AG, Percy AJ, Yang J, Camenzind AG, Borchers CH. Multiplexed quantitation of endogenous proteins in dried blood spots by multiple reaction monitoring-mass spectrometry. Molecular & Cellular Proteomics : McP. 12: 781-91. PMID 23221968 DOI: 10.1074/mcp.M112.022442  0.96
2013 Da Costa LA, García-Bailo B, Borchers CH, Badawi A, El-Sohemy A. Association between the plasma proteome and plasma α-tocopherol concentrations in humans. The Journal of Nutritional Biochemistry. 24: 396-400. PMID 23199695 DOI: 10.1016/J.Jnutbio.2012.08.012  0.96
2013 Serpa JJ, Patterson AP, Pan J, Han J, Wishart DS, Petrotchenko EV, Borchers CH. Using multiple structural proteomics approaches for the characterization of prion proteins. Journal of Proteomics. 81: 31-42. PMID 23085224 DOI: 10.1016/j.jprot.2012.10.008  0.76
2013 Da Costa LA, García-Bailo B, Borchers CH, Badawi A, El-Sohemy A. Association between the plasma proteome and serum ascorbic acid concentrations in humans. The Journal of Nutritional Biochemistry. 24: 842-7. PMID 22841398 DOI: 10.1016/J.Jnutbio.2012.05.002  0.96
2012 Fischer K, Da Costa LA, García-Bailo B, Borchers CH, El-Sohemy A. Glutathione S-transferase (GST) M1, but not GSTT1, genotype influences plasma proteomic profiles in Caucasian and East Asian young adults. Journal of Proteome Research. 11: 5022-33. PMID 22946785 DOI: 10.1021/Pr3005887  0.96
2012 Le CH, Han J, Borchers CH. Dithranol as a MALDI matrix for tissue imaging of lipids by Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 84: 8391-8. PMID 22931516 DOI: 10.1021/ac301901s  0.96
2012 Singh A, Cohen Freue GV, Oosthuizen JL, Kam SH, Ruan J, Takhar MK, Gauvreau GM, O'Byrne PM, Fitzgerald JM, Boulet LP, Borchers CH, Tebbutt SJ. Plasma proteomics can discriminate isolated early from dual responses in asthmatic individuals undergoing an allergen inhalation challenge. Proteomics. Clinical Applications. 6: 476-85. PMID 22930592 DOI: 10.1002/prca.201200013  0.96
2012 Cohen Freue GV, Borchers CH. Multiple reaction monitoring (MRM): principles and application to coronary artery disease. Circulation. Cardiovascular Genetics. 5: 378. PMID 22715283 DOI: 10.1161/CIRCGENETICS.111.959528  0.96
2012 Aguilar-Mahecha A, Kuzyk MA, Domanski D, Borchers CH, Basik M. The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines. Plos One. 7: e38290. PMID 22701622 DOI: 10.1371/journal.pone.0038290  0.96
2012 Caswell CC, Gaines JM, Ciborowski P, Smith D, Borchers CH, Roux CM, Sayood K, Dunman PM, Roop Ii RM. Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Molecular Microbiology. 85: 345-60. PMID 22690807 DOI: 10.1111/J.1365-2958.2012.08117.X  0.96
2012 Serpa JJ, Parker CE, Petrotchenko EV, Han J, Pan J, Borchers CH. Mass spectrometry-based structural proteomics. European Journal of Mass Spectrometry (Chichester, England). 18: 251-67. PMID 22641729 DOI: 10.1255/ejms.1178  0.96
2012 Domanski D, Percy AJ, Yang J, Chambers AG, Hill JS, Freue GV, Borchers CH. MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma. Proteomics. 12: 1222-43. PMID 22577024 DOI: 10.1002/pmic.201100568  0.96
2012 Percy AJ, Chambers AG, Yang J, Domanski D, Borchers CH. Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins. Analytical and Bioanalytical Chemistry. 404: 1089-101. PMID 22547352 DOI: 10.1007/s00216-012-6010-y  0.96
2012 Clarke KJ, Adams AE, Manzke LH, Pearson TW, Borchers CH, Porter RK. A role for ubiquitinylation and the cytosolic proteasome in turnover of mitochondrial uncoupling protein 1 (UCP1). Biochimica Et Biophysica Acta. 1817: 1759-67. PMID 22531154 DOI: 10.1016/J.Bbabio.2012.03.035  0.96
2012 Eckle T, Hartmann K, Bonney S, Reithel S, Mittelbronn M, Walker LA, Lowes BD, Han J, Borchers CH, Buttrick PM, Kominsky DJ, Colgan SP, Eltzschig HK. Adora2b-elicited Per2 stabilization promotes a HIF-dependent metabolic switch crucial for myocardial adaptation to ischemia. Nature Medicine. 18: 774-82. PMID 22504483 DOI: 10.1038/nm.2728  0.96
2012 Pan J, Han J, Borchers CH, Konermann L. Structure and dynamics of small soluble Aβ(1-40) oligomers studied by top-down hydrogen exchange mass spectrometry. Biochemistry. 51: 3694-703. PMID 22486153 DOI: 10.1021/Bi3002049  0.96
2012 Petrotchenko EV, Serpa JJ, Hardie DB, Berjanskii M, Suriyamongkol BP, Wishart DS, Borchers CH. Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins. Molecular & Cellular Proteomics : McP. 11: M111.013524. PMID 22438564 DOI: 10.1074/Mcp.M111.013524  0.76
2012 Mason DR, Reid JD, Camenzind AG, Holmes DT, Borchers CH. Duplexed iMALDI for the detection of angiotensin I and angiotensin II. Methods (San Diego, Calif.). 56: 213-22. PMID 22387391 DOI: 10.1016/j.ymeth.2012.02.006  0.96
2012 Antunes LC, Wang M, Andersen SK, Ferreira RB, Kappelhoff R, Han J, Borchers CH, Finlay BB. Repression of Salmonella enterica phoP expression by small molecules from physiological bile. Journal of Bacteriology. 194: 2286-96. PMID 22366421 DOI: 10.1128/JB.00104-12  0.96
2012 Clemis EJ, Smith DS, Camenzind AG, Danell RM, Parker CE, Borchers CH. Quantitation of spatially-localized proteins in tissue samples using MALDI-MRM imaging. Analytical Chemistry. 84: 3514-22. PMID 22356211 DOI: 10.1021/Ac202875D  0.96
2012 Chen YT, Chen HW, Domanski D, Smith DS, Liang KH, Wu CC, Chen CL, Chung T, Chen MC, Chang YS, Parker CE, Borchers CH, Yu JS. Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. Journal of Proteomics. 75: 3529-45. PMID 22236518 DOI: 10.1016/j.jprot.2011.12.031  0.96
2012 García-Bailo B, Brenner DR, Nielsen D, Lee HJ, Domanski D, Kuzyk M, Borchers CH, Badawi A, Karmali MA, El-Sohemy A. Dietary patterns and ethnicity are associated with distinct plasma proteomic groups. The American Journal of Clinical Nutrition. 95: 352-61. PMID 22205312 DOI: 10.3945/Ajcn.111.022657  0.96
2012 Domanski D, Cohen Freue GV, Sojo L, Kuzyk MA, Ratkay L, Parker CE, Goldberg YP, Borchers CH. The use of multiplexed MRM for the discovery of biomarkers to differentiate iron-deficiency anemia from anemia of inflammation. Journal of Proteomics. 75: 3514-28. PMID 22146476 DOI: 10.1016/j.jprot.2011.11.022  0.96
2012 Thambirajah AA, Ng MK, Frehlick LJ, Li A, Serpa JJ, Petrotchenko EV, Silva-Moreno B, Missiaen KK, Borchers CH, Adam Hall J, Mackie R, Lutz F, Gowen BE, Hendzel M, Georgel PT, et al. MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain. Nucleic Acids Research. 40: 2884-97. PMID 22144686 DOI: 10.1093/nar/gkr1066  0.76
2012 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. 12: 11-20. PMID 22069307 DOI: 10.1002/Pmic.201100562  0.96
2012 Pan J, Han J, Borchers CH. Top-down hydrogen/deuterium exchange and ECD-stitched FTICR-MS for probing structural dynamics of a 29-kDa enzyme International Journal of Mass Spectrometry. 325: 130-138. DOI: 10.1016/j.ijms.2012.06.021  0.96
2011 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. Clinical Applications. 5: 580-9. PMID 22213554 DOI: 10.1002/prca.201100097  0.96
2011 Leung C, Utokaparch S, Sharma A, Yu C, Abraham T, Borchers C, Bernatchez P. Proteomic identification of dysferlin-interacting protein complexes in human vascular endothelium. Biochemical and Biophysical Research Communications. 415: 263-9. PMID 22037454 DOI: 10.1016/j.bbrc.2011.10.031  0.96
2011 Shah B, Kozlowski RL, Han J, Borchers CH. Emerging mass spectrometry-based technologies for analyses of Chromatin changes: Analysis of histones and histone modifications Methods in Molecular Biology. 773: 259-303. PMID 21898261 DOI: 10.1007/978-1-61779-231-1_16  0.96
2011 Arena ET, Auweter SD, Antunes LC, Vogl AW, Han J, Guttman JA, Croxen MA, Menendez A, Covey SD, Borchers CH, Finlay BB. The deubiquitinase activity of the Salmonella pathogenicity island 2 effector, SseL, prevents accumulation of cellular lipid droplets. Infection and Immunity. 79: 4392-400. PMID 21875964 DOI: 10.1128/Iai.05478-11  0.96
2011 Antunes LC, Andersen SK, Menendez A, Arena ET, Han J, Ferreira RB, Borchers CH, Finlay BB. Metabolomics reveals phospholipids as important nutrient sources during Salmonella growth in bile in vitro and in vivo. Journal of Bacteriology. 193: 4719-25. PMID 21764918 DOI: 10.1128/JB.05132-11  0.96
2011 Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers CH, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, et al. The human proteome project: current state and future direction. Molecular & Cellular Proteomics : McP. 10: M111.009993. PMID 21742803 DOI: 10.1074/Mcp.M111.009993  0.96
2011 Pan J, Han J, Borchers CH, Konermann L. Conformer-specific hydrogen exchange analysis of Aβ(1-42) oligomers by top-down electron capture dissociation mass spectrometry Analytical Chemistry. 83: 5386-5393. PMID 21635007 DOI: 10.1021/Ac200906V  0.96
2011 Petrotchenko EV, Yamaguchi N, Pasek DA, Borchers CH, Meissner G. Mass spectrometric analysis and mutagenesis predict involvement of multiple cysteines in redox regulation of the skeletal muscle ryanodine receptor ion channel complex. Research and Reports in Biology. 2011: 13-21. PMID 21603587 DOI: 10.2147/RRB.S15776  0.76
2011 Hall DE, Robert JA, Keeling CI, Domanski D, Quesada AL, Jancsik S, Kuzyk MA, Hamberger B, Borchers CH, Bohlmann J. An integrated genomic, proteomic and biochemical analysis of (+)-3-carene biosynthesis in Sitka spruce (Picea sitchensis) genotypes that are resistant or susceptible to white pine weevil. The Plant Journal : For Cell and Molecular Biology. 65: 936-48. PMID 21323772 DOI: 10.1111/J.1365-313X.2010.04478.X  0.96
2011 Borchers CH. Technology development: An overview Molecular and Cellular Proteomics. 10. PMID 21193538 DOI: 10.1074/mcp.E110.007468-1  0.96
2011 Lahav T, Sivam D, Volpin H, Ronen M, Tsigankov P, Green A, Holland N, Kuzyk M, Borchers C, Zilberstein D, Myler PJ. Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania Faseb Journal. 25: 515-525. PMID 20952481 DOI: 10.1096/Fj.10-157529  0.96
2011 Petrotchenko EV, Serpa JJ, Borchers CH. An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics Molecular and Cellular Proteomics. 10. PMID 20622150 DOI: 10.1074/mcp.M110.001420  0.96
2010 Borchers CH, Parker CE. Improving the biomarker pipeline Clinical Chemistry. 56: 1786-1788. PMID 20940327 DOI: 10.1373/clinchem.2010.155705  0.96
2010 Pan J, Han J, Borchers CH, Konermann L. Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry Analytical Chemistry. 82: 8591-8597. PMID 20849085 DOI: 10.1021/Ac101679J  0.96
2010 Petrotchenko EV, Borchers CH. Crosslinking combined with mass spectrometry for structural proteomics Mass Spectrometry Reviews. 29: 862-876. PMID 20730915 DOI: 10.1002/mas.20293  0.96
2010 Proc JL, Kuzyk MA, Hardie DB, Yang J, Smith DS, Jackson AM, Parker CE, Borchers CH. A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. Journal of Proteome Research. 9: 5422-37. PMID 20722421 DOI: 10.1021/pr100656u  0.96
2010 Domanski D, Murphy LC, Borchers CH. Assay development for the determination of phosphorylation stoichiometry using multiple reaction monitoring methods with and without phosphatase treatment: Application to breast cancer signaling pathways Analytical Chemistry. 82: 5610-5620. PMID 20524616 DOI: 10.1021/ac1005553  0.96
2010 Parker CE, Pearson TW, Anderson NL, Borchers CH. Mass-spectrometry-based clinical proteomics--a review and prospective. The Analyst. 135: 1830-8. PMID 20520858 DOI: 10.1039/C0An00105H  0.96
2010 Freue GV, Sasaki M, Meredith A, Günther OP, Bergman A, Takhar M, Mui A, Balshaw RF, Ng RT, Opushneva N, Hollander Z, Li G, Borchers CH, Wilson-McManus J, McManus BM, et al. Proteomic signatures in plasma during early acute renal allograft rejection. Molecular & Cellular Proteomics : McP. 9: 1954-67. PMID 20501940 DOI: 10.1074/mcp.M110.000554  0.96
2010 Han J, Borchers CH. Top-down analysis of recombinant histone H3 and its methylated analogs by ESI/FT-ICR mass spectrometry Proteomics. 10: 3621-3630. PMID 20486121 DOI: 10.1002/pmic.201000157  0.96
2010 Reid JD, Holmes DT, Mason DR, Shah B, Borchers CH. Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension. Journal of the American Society For Mass Spectrometry. 21: 1680-6. PMID 20199871 DOI: 10.1016/j.jasms.2010.01.024  0.96
2010 Han J, Antunes LCM, Finlay BB, Borchers CH. Metabolomics: Towards understanding host-microbe interactions Future Microbiology. 5: 153-161. PMID 20143941 DOI: 10.2217/fmb.09.132  0.96
2010 Petrotchenko EV, Borchers CH. ICC-CLASS: Isotopically-coded cleavable crosslinking analysis software suite Bmc Bioinformatics. 11. PMID 20109223 DOI: 10.1186/1471-2105-11-64  0.96
2010 Helbing CC, Maher SK, Han J, Gunderson MP, Borchers C. Peering into molecular mechanisms of action with frogSCOPE General and Comparative Endocrinology. 168: 190-198. PMID 20074577 DOI: 10.1016/J.Ygcen.2010.01.012  0.96
2010 Petrotchenko EV, Serpa JJ, Borchers CH. Use of a combination of lsotopically coded cross-linkers and lsotopically coded N-terminal modification reagents for selective identification of inter-peptide crosslinks Analytical Chemistry. 82: 817-823. PMID 20050626 DOI: 10.1021/ac901637v  0.96
2009 Han J, Datla R, Chan S, Borchers CH. Mass spectrometry-based technologies for high-throughput metabolomics. Bioanalysis. 1: 1665-84. PMID 21083110 DOI: 10.4155/bio.09.158  0.96
2009 Elliott MH, Smith DS, Parker CE, Borchers C. Current trends in quantitative proteomics. Journal of Mass Spectrometry : Jms. 44: 1637-60. PMID 19957301 DOI: 10.1002/Jms.1692  0.96
2009 Zulak KG, Lippert DN, Kuzyk MA, Domanski D, Chou T, Borchers CH, Bohlmann J. Targeted proteomics using selected reaction monitoring reveals the induction of specific terpene synthases in a multi-level study of methyl jasmonate-treated Norway spruce (Picea abies). The Plant Journal : For Cell and Molecular Biology. 60: 1015-30. PMID 19754519 DOI: 10.1111/j.1365-313X.2009.04020.x  0.96
2009 Pan J, Han J, Borchers CH, Konermann L. Hydrogen/deuterium exchange mass spectrometry with top-down electron capture dissociation for characterizing structural transitions of a 17 kDa protein Journal of the American Chemical Society. 131: 12801-12808. PMID 19670873 DOI: 10.1021/Ja904379W  0.96
2009 Bordeerat NK, Georgieva NI, Klapper DG, Collins LB, Cross TJ, Borchers CH, Swenberg JA, Boysen G. Accurate quantitation of standard peptides used for quantitative proteomics. Proteomics. 9: 3939-44. PMID 19637239 DOI: 10.1002/Pmic.200900043  0.96
2009 Sneekes EJ, Han J, Elliot M, Ausio J, Swart R, Heck AJ, Borchers C. Accurate molecular weight analysis of histones using FFE and RP-HPLC on monolithic capillary columns. Journal of Separation Science. 32: 2691-8. PMID 19569095 DOI: 10.1002/Jssc.200800627  0.96
2009 Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature Biotechnology. 27: 633-41. PMID 19561596 DOI: 10.1038/Nbt.1546  0.96
2009 Kuzyk MA, Ohlund LB, Elliott MH, Smith D, Qian H, Delaney A, Hunter CL, Borchers CH. A comparison of MS/MS-based, stable-isotope-labeled, quantitation performance on ESI-quadrupole TOF and MALDI-TOF/TOF mass spectrometers. Proteomics. 9: 3328-40. PMID 19504495 DOI: 10.1002/pmic.200800412  0.96
2009 Kuzyk MA, Smith D, Yang J, Cross TJ, Jackson AM, Hardie DB, Anderson NL, Borchers CH. Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Molecular & Cellular Proteomics : McP. 8: 1860-77. PMID 19411661 DOI: 10.1074/mcp.M800540-MCP200  0.96
2009 Rodriguez H, Snyder M, Uhlén M, Andrews P, Beavis R, Borchers C, Chalkley RJ, Cho SY, Cottingham K, Dunn M, Dylag T, Edgar R, Hare P, Heck AJ, Hirsch RF, et al. Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles. Journal of Proteome Research. 8: 3689-92. PMID 19344107 DOI: 10.1021/Pr900023Z  0.96
2009 Ouvry-Patat SA, Torres MP, Gelfand CA, Quek HH, Easterling M, Speir JP, Borchers CH. Top-down proteomics on a high-field Fourier transform ion cyclotron resonance mass spectrometer. Methods in Molecular Biology (Clifton, N.J.). 492: 215-31. PMID 19241035 DOI: 10.1007/978-1-59745-493-3_12  0.96
2009 Anderson NL, Jackson A, Smith D, Hardie D, Borchers C, Pearson TW. SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device. Molecular & Cellular Proteomics : McP. 8: 995-1005. PMID 19196707 DOI: 10.1074/Mcp.M800446-Mcp200  0.96
2009 Anderson NL, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA. A human proteome detection and quantitation project. Molecular & Cellular Proteomics : McP. 8: 883-6. PMID 19131327 DOI: 10.1074/Mcp.R800015-Mcp200  0.96
2009 Lippert DN, Ralph SG, Phillips M, White R, Smith D, Hardie D, Gershenzon J, Ritland K, Borchers CH, Bohlmann J. Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response. Proteomics. 9: 350-67. PMID 19105170 DOI: 10.1002/pmic.200800252  0.96
2009 Petrotchenko EV, Xiao K, Cable J, Chen Y, Dokholyan NV, Borchers CH. BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics. Molecular & Cellular Proteomics : McP. 8: 273-86. PMID 18838738 DOI: 10.1074/Mcp.M800265-Mcp200  0.96
2009 Parker CE, Smith D, Suckau D, Borchers CH. Mass spectrometry-based tissue imaging Advanced Imaging in Biology and Medicine: Technology, Software Environments, Applications. 131-146. DOI: 10.1007/978-3-540-68993-5_6  0.96
2008 Han J, Danell RM, Patel JR, Gumerov DR, Scarlett CO, Speir JP, Parker CE, Rusyn I, Zeisel S, Borchers CH. Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry. Metabolomics : Official Journal of the Metabolomic Society. 4: 128-140. PMID 19081807 DOI: 10.1007/S11306-008-0104-8  0.96
2008 Danell RM, Ouvry-Patat SA, Scarlett CO, Speir JP, Borchers CH. Data Self-Recalibration and Mixture Mass Fingerprint Searching (DASER-MMF) to enhance protein identification within complex mixtures. Journal of the American Society For Mass Spectrometry. 19: 1914-25. PMID 18708289 DOI: 10.1016/J.Jasms.2008.07.017  0.96
2008 Pan J, Han J, Borchers CH, Konermann L. Electron capture dissociation of electrosprayed protein ions for spatially resolved hydrogen exchange measurements Journal of the American Chemical Society. 130: 11574-11575. PMID 18686958 DOI: 10.1021/Ja802871C  0.96
2008 Ouvry-Patat SA, Torres MP, Quek HH, Gelfand CA, O'Mullan P, Nissum M, Schroeder GK, Han J, Elliott M, Dryhurst D, Ausio J, Wolfenden R, Borchers CH. Free-flow electrophoresis for top-down proteomics by Fourier transform ion cyclotron resonance mass spectrometry. Proteomics. 8: 2798-808. PMID 18655049 DOI: 10.1002/Pmic.200800079  0.96
2008 Parker CE, Warren MR, Mocanu V, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 446: 109-30. PMID 18373253 DOI: 10.1007/978-1-60327-084-7_8  0.96
2008 Borchers C. The 8th International Conference of the Canadian Proteomics Initiative Expert Review of Proteomics. 5: 549-550. DOI: 10.1586/14789450.5.4.549  0.96
2008 Parker CE, Warren MRE, Mocanu V, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination Methods in Molecular Biology. 446: 109-130. DOI: 10.1007/978-1-60327-84-7_8  0.96
2007 Jiang J, Parker CE, Hoadley KA, Perou CM, Boysen G, Borchers CH. Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis. Proteomics. Clinical Applications. 1: 1651-9. PMID 21136662 DOI: 10.1002/Prca.200700009  0.96
2007 Jiang J, Parker CE, Fuller JR, Kawula TH, Borchers CH. An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis. Analytica Chimica Acta. 605: 70-9. PMID 18022413 DOI: 10.1016/J.Aca.2007.10.025  0.96
2007 McMorran BJ, Patat SAO, Carlin JB, Grimwood K, Jones A, Armstrong DS, Galati JC, Cooper PJ, Byrnes CA, Francis PW, Robertson CF, Hume DA, Borchers CH, Wainwright CE, Wainwright BJ. Novel neutrophil-derived proteins in bronchoalveolar lavage fluid indicate an exaggerated inflammatory response in pediatric cystic fibrosis patients Clinical Chemistry. 53: 1782-1791. PMID 17702859 DOI: 10.1373/Clinchem.2007.087650  0.96
2007 Myers-Morales T, Cowan C, Gray ME, Wulff CR, Parker CE, Borchers CH, Straley SC. A surface-focused biotinylation procedure identifies the Yersinia pestis catalase KatY as a membrane-associated but non-surface-located protein. Applied and Environmental Microbiology. 73: 5750-9. PMID 17644638 DOI: 10.1128/Aem.02968-06  0.96
2007 Reid JD, Parker CE, Borchers CH. Protein arrays for biomarker discovery Current Opinion in Molecular Therapeutics. 9: 216-221. PMID 17608019  0.96
2007 Torres MP, Borchers CH. Mitotic phosphorylation of the anaphase-promoting complex inhibitory subunit Mnd2 is necessary for efficient progression through meiosis i. The Journal of Biological Chemistry. 282: 17351-62. PMID 17459880 DOI: 10.1074/Jbc.M610841200  0.96
2007 Hao N, Behar M, Parnell SC, Torres MP, Borchers CH, Elston TC, Dohlman HG. A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway. Current Biology : Cb. 17: 659-67. PMID 17363249 DOI: 10.1016/J.Cub.2007.02.044  0.96
2007 Boysen G, Scarlett CO, Temple B, Combs TP, Brooks NL, Borchers CH, Swenberg JA. Identification of covalent modifications in P450 2E1 by 1,2-epoxy-3-butene in vitro. Chemico-Biological Interactions. 166: 170-5. PMID 17298833 DOI: 10.1016/J.Cbi.2007.01.007  0.96
2007 Thelin WR, Chen Y, Gentzsch M, Kreda SM, Sallee JL, Scarlett CO, Borchers CH, Jacobson K, Stutts MJ, Milgram SL. Direct interaction with filamins modulates the stability and plasma membrane expression of CFTR. The Journal of Clinical Investigation. 117: 364-74. PMID 17235394 DOI: 10.1172/Jci30376  0.96
2007 Dial JM, Petrotchenko EV, Borchers CH. Inhibition of APCCdh1 activity by Cdh1/Acm1/Bmh1 ternary complex formation. The Journal of Biological Chemistry. 282: 5237-48. PMID 17178718 DOI: 10.1074/jbc.M606589200  0.96
2006 Petrotchenko EV, Pasek D, Elms P, Dokholyan NV, Meissner G, Borchers CH. Combining fluorescence detection and mass spectrometric analysis for comprehensive and quantitative analysis of redox-sensitive cysteines in native membrane proteins. Analytical Chemistry. 78: 7959-66. PMID 17134128 DOI: 10.1021/Ac060238R  0.96
2006 Robinette D, Neamati N, Tomer KB, Borchers CH. Photoaffinity labeling combined with mass spectrometric approaches as a tool for structural proteomics. Expert Review of Proteomics. 3: 399-408. PMID 16901199 DOI: 10.1586/14789450.3.4.399  0.96
2006 Inoue K, Borchers CH, Negishi M. Cohesin protein SMC1 represses the nuclear receptor CAR-mediated synergistic activation of a human P450 gene by xenobiotics. The Biochemical Journal. 398: 125-33. PMID 16623664 DOI: 10.1042/BJ20060109  0.96
2006 Borchers CH, Thapar R, Petrotchenko EV, Torres MP, Speir JP, Easterling M, Dominski Z, Marzluff WF. Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding. Proceedings of the National Academy of Sciences of the United States of America. 103: 3094-9. PMID 16492733 DOI: 10.1073/Pnas.0511289103  0.96
2005 Warren EN, Jiang J, Parker CE, Borchers CH. Absolute quantitation of cancer-related proteins using an MS-based peptide chip. Biotechniques. 7-11. PMID 16528910 DOI: 10.2144/05386Su01  0.96
2005 Torres MP, Thapar R, Marzluff WF, Borchers CH. Phosphatase-directed phosphorylation-site determination: a synthesis of methods for the detection and identification of phosphopeptides. Journal of Proteome Research. 4: 1628-35. PMID 16212415 DOI: 10.1021/Pr050129D  0.96
2005 Loiselle DR, Thelin WR, Parker CE, Dicheva NN, Kesner BA, Mocanu V, Wang F, Milgram SL, Warren MR, Borchers CH. Improved protein identification through the use of unstained gels. Journal of Proteome Research. 4: 992-7. PMID 15952747 DOI: 10.1021/Pr049785O  0.96
2005 Parnell SC, Marotti LA, Kiang L, Torres MP, Borchers CH, Dohlman HG. Phosphorylation of the RGS protein Sst2 by the MAP kinase Fus3 and use of Sst2 as a model to analyze determinants of substrate sequence specificity. Biochemistry. 44: 8159-66. PMID 15924435 DOI: 10.1021/Bi0503091  0.96
2005 Parker CE, Mocanu V, Warren MR, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 301: 153-73. PMID 15917631 DOI: 10.1385/1-59259-895-1:153  0.96
2005 Parker CE, Warren MR, Loiselle DR, Dicheva NN, Scarlett CO, Borchers CH. Identification of components of protein complexes Methods in Molecular Biology (Clifton, N.J.). 301: 117-151. PMID 15917630 DOI: 10.1385/1-59259-895-1:117  0.96
2005 Petrotchenko EV, Olkhovik VK, Borchers CH. Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes Molecular and Cellular Proteomics. 4: 1167-1179. PMID 15901824 DOI: 10.1074/mcp.T400016-MCP200  0.96
2005 Esteban Warren MR, Parker CE, Mocanu V, Klapper D, Borchers CH. Electrospray ionization tandem mass spectrometry of model peptides reveals diagnostic fragment ions for protein ubiquitination Rapid Communications in Mass Spectrometry. 19: 429-437. PMID 15655800 DOI: 10.1002/rcm.1798  0.96
2004 Borchers CH, Marquez VE, Schroeder GK, Short SA, Snider MJ, Speir JP, Wolfenden R. Fourier transform ion cyclotron resonance MS reveals the presence of a water molecule in an enzyme transition-state analogue complex. Proceedings of the National Academy of Sciences of the United States of America. 101: 15341-5. PMID 15494437 DOI: 10.1073/Pnas.0406781101  0.96
2004 Hall MC, Warren EN, Borchers CH. Multi-kinase phosphorylation of the APC/C activator Cdh1 revealed by mass spectrometry Cell Cycle. 3: 1278-1284. PMID 15467459  0.96
2004 Warren EN, Elms PJ, Parker CE, Borchers CH. Development of a protein chip: a MS-based method for quantitation of protein expression and modification levels using an immunoaffinity approach. Analytical Chemistry. 76: 4082-92. PMID 15253646 DOI: 10.1021/Ac049880G  0.96
2004 Howell M, Borchers C, Milgram SL. Heterogeneous nuclear ribonuclear protein U associates with YAP and regulates its co-activation of Bax transcription. The Journal of Biological Chemistry. 279: 26300-6. PMID 15096513 DOI: 10.1074/Jbc.M401070200  0.96
2004 Huang C, Borchers CH, Schaller MD, Jacobson K. Phosphorylation of paxillin by p38MAPK is involved in the neurite extension of PC-12 cells. The Journal of Cell Biology. 164: 593-602. PMID 14970194 DOI: 10.1083/Jcb.200307081  0.96
2003 Raska CS, Parker CE, Sunnarborg SW, Pope RM, Lee DC, Glish GL, Borchers CH. Rapid and sensitive identification of epitope-containing peptides by direct matrix-assisted laser desorption/ionization tandem mass spectrometry of peptides affinity-bound to antibody beads. Journal of the American Society For Mass Spectrometry. 14: 1076-85. PMID 14530088 DOI: 10.1016/S1044-0305(03)00405-7  0.96
2003 Furukawa M, He YJ, Borchers C, Xiong Y. Targeting of protein ubiquitination by BTB-Cullin 3-Roc1 ubiquitin ligases. Nature Cell Biology. 5: 1001-7. PMID 14528312 DOI: 10.1038/Ncb1056  0.96
2003 Kast J, Parker CE, van der Drift K, Dial JM, Milgram SL, Wilm M, Howell M, Borchers CH. Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification. Rapid Communications in Mass Spectrometry : Rcm. 17: 1825-34. PMID 12876682 DOI: 10.1002/Rcm.1114  0.96
2003 Huang C, Rajfur Z, Borchers C, Schaller MD, Jacobson K. JNK phosphorylates paxillin and regulates cell migration. Nature. 424: 219-23. PMID 12853963 DOI: 10.1038/Nature01745  0.96
2003 Hall MC, Shcherbakova PV, Fortune JM, Borchers CH, Dial JM, Tomer KB, Kunkel TA. DNA binding by yeast Mlh1 and Pms1: implications for DNA mismatch repair. Nucleic Acids Research. 31: 2025-34. PMID 12682353 DOI: 10.1093/nar/gkg324  0.96
2003 Hall MC, Torres MP, Schroeder GK, Borchers CH. Mnd2 and Swm1 are core subunits of the Saccharomyces cerevisiae anaphase-promoting complex. The Journal of Biological Chemistry. 278: 16698-705. PMID 12609981 DOI: 10.1074/Jbc.M213109200  0.96
2003 Zheng L, Dominski Z, Yang XC, Elms P, Raska CS, Borchers CH, Marzluff WF. Phosphorylation of stem-loop binding protein (SLBP) on two threonines triggers degradation of SLBP, the sole cell cycle-regulated factor required for regulation of histone mRNA processing, at the end of S phase Molecular and Cellular Biology. 23: 1590-1601. PMID 12588979 DOI: 10.1128/Mcb.23.5.1590-1601.2003  0.96
2002 Han J, Pope M, Borchers C, M Graves L. Mapping of protein phosphorylation by dual enzyme digestion and matrix-assisted laser desorption ionization-quadrupole orthogonal time-of-flight mass spectrometry. Analytical Biochemistry. 310: 215-8. PMID 12423641 DOI: 10.1016/S0003-2697(02)00376-7  0.96
2002 Bruno ME, Borchers CH, Dial JM, Walker NJ, Hartis JE, Wetmore BA, Carl Barrett JC, Tomer KB, Merrick BA. Effects of TCDD upon IkappaB and IKK subunits localized in microsomes by proteomics. Archives of Biochemistry and Biophysics. 406: 153-64. PMID 12361703 DOI: 10.1016/S0003-9861(02)00452-6  0.96
2002 Raska CS, Parker CE, Huang C, Han J, Glish GL, Pope M, Borchers CH. Pseudo-MS3 in a MALDI orthogonal quadrupole-time of flight mass spectrometer. Journal of the American Society For Mass Spectrometry. 13: 1034-41. PMID 12322951 DOI: 10.1016/S1044-0305(02)00433-6  0.96
2002 Dominski Z, Yang XC, Raska CS, Santiago C, Borchers CH, Duronio RJ, Marzluff WF. 3' end processing of Drosophila melanogaster histone pre-mRNAs: requirement for phosphorylated Drosophila stem-loop binding protein and coevolution of the histone pre-mRNA processing system. Molecular and Cellular Biology. 22: 6648-60. PMID 12192062 DOI: 10.1128/Mcb.22.18.6648-6660.2002  0.96
2002 Raska CS, Parker CE, Dominski Z, Marzluff WF, Glish GL, Pope RM, Borchers CH. Direct MALDI-MS/MS of phosphopeptides affinity-bound to immobilized metal ion affinity chromatography beads. Analytical Chemistry. 74: 3429-33. PMID 12139050 DOI: 10.1021/Ac0111199  0.96
2002 Wine RN, Dial JM, Tomer KB, Borchers CH. Identification of components of protein complexes using a fluorescent photo-cross-linker and mass spectrometry. Analytical Chemistry. 74: 1939-45. PMID 12033289 DOI: 10.1021/Ac011041W  0.96
2002 Han J, Pope M, Borchers C, Graves LM. Mapping of protein phosphorylation by dual enzyme digestion and MALDI/quadrupole orthogonal TOF mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 559-560.  0.96
2002 Borchers CH, Hochleitner EO, Tomer KB, Neamati N. Mass spectrometric approaches combined with photoaffinity labeling and molecular modeling for structural characterization of drug binding sites in HIV-integrase Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 351-352.  0.96
2002 Elms PJ, Van der Drift K, Borchers CH. Absolute protein quantification for proteomics Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 305-306.  0.96
2002 Van Der Drift K, Hall MC, Elms P, Borchers CH. Characterization of the proteome based on molecular weight determination of intact proteins combined with peptide mapping Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 181-182.  0.96
2001 Wang H, Cao R, Xia L, Erdjument-Bromage H, Borchers C, Tempst P, Zhang Y. Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase Molecular Cell. 8: 1207-1217. PMID 11779497 DOI: 10.1016/S1097-2765(01)00405-1  0.96
2001 Chapin RE, Wine RN, Harris MW, Borchers CH, Haseman JK. Structure and control of a cell-cell adhesion complex associated with spermiation in rat seminiferous epithelium Journal of Andrology. 22: 1030-1052. PMID 11700851  0.96
2001 Merrick BA, Zhou W, Martin KJ, Jeyarajah S, Parker CE, Selkirk JK, Tomer KB, Borchers CH. Site-specific phosphorylation of human p53 protein determined by mass spectrometry. Biochemistry. 40: 4053-66. PMID 11300786 DOI: 10.1021/bi002045i  0.96
2001 Petrotchenko EV, Pedersen LC, Borchers CH, Tomer KB, Negishi M. The dimerization motif of cytosolic sulfotransferases Febs Letters. 490: 39-43. PMID 11172807 DOI: 10.1016/S0014-5793(01)02129-9  0.96
2000 Zhu X, Borchers C, Bienstock RJ, Tomer KB. Mass spectrometric characterization of the glycosylation pattern of HIV-gp120 expressed in CHO cells Biochemistry. 39: 11194-11204. PMID 10985765 DOI: 10.1021/Bi000432M  0.96
2000 Hochleitner EO, Borchers C, Parker C, Bienstock RJ, Tomer KB. Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis Protein Science. 9: 487-496. PMID 10752610  0.96
2000 Borchers C, Peter JF, Hall MC, Kunkel TA, Tomer KB. Identification of in-gel digested proteins by complementary peptide mass fingerprinting and tandem mass spectrometry data obtained on an electrospray ionization quadrupole time-of-flight mass spectrometer Analytical Chemistry. 72: 1163-1168. PMID 10740854 DOI: 10.1021/ac990937m  0.96
1999 Borchers C, Tomer KB. Characterization of the noncovalent complex of human immunodeficiency virus glycoprotein 120 with its cellular receptor CD4 by matrix-assisted laser desorption/ionization mass spectrometry Biochemistry. 38: 11734-11740. PMID 10512629 DOI: 10.1021/bi990935w  0.96
1999 Borchers C, Parker CE, Deterding LJ, Tomer KB. Preliminary comparison of precursor scans and liquid chromatography-tandem mass spectrometry on a hybrid quadrupole time-of-flight mass spectrometer Journal of Chromatography A. 854: 119-130. PMID 10497933 DOI: 10.1016/S0021-9673(99)00479-3  0.96
1999 Sinclair C, Borchers C, Parker C, Tomer K, Charbonneau H, Rossie S. The tetratricopeptide repeat domain and a C-terminal region control the activity of Ser/Thr protein phosphatase 5 Journal of Biological Chemistry. 274: 23666-23672. PMID 10438550 DOI: 10.1074/jbc.274.33.23666  0.96
1998 Fiedler W, Borchers C, Macht M, Deininger SO, Przybylski M. Molecular characterization of a conformational epitope of hen egg white lysozyme by differential chemical modification of immune complexes and mass spectrometric peptide mapping Bioconjugate Chemistry. 9: 236-241. PMID 9548539 DOI: 10.1021/Bc970148G  0.96
1996 Boer R, Ulrich WR, Haas S, Borchers C, Gekeler V, Boss H, Przybylski M, Schödl A. Interaction of cytostatics and chemosensitizers with the dexniguldipine binding site on P-glycoprotein European Journal of Pharmacology. 295: 253-260. PMID 8720592 DOI: 10.1016/0014-2999(95)00649-4  0.96
1994 Glocker MO, Borchers C, Fiedler W, Suckau D, Przybylski M. Molecular characterization of surface topology in protein tertiary structures by amino-acylation and mass spectrometric peptide mapping Bioconjugate Chemistry. 5: 583-590. PMID 7873661 DOI: 10.1021/Bc00030A014  0.96
1992 Borchers C, Suckau D, Mak M, Przybylski M. 014 Molecular analysis of surface topology and microenvironment in protein tertiary structures by selective chemical modification and mass spectrometric peptide mapping Fresenius' Journal of Analytical Chemistry. 343: 64-65. DOI: 10.1007/BF00332008  0.96
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