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Christoph Borchers - Publications

Affiliations: 
Biochemistry and Biophysics University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Biochemistry
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Year Citation  Score
2020 Makepeace KAT, Mohammed Y, Rudashevskaya EL, Petrotchenko EV, Vögtle FN, Meisinger C, Sickmann A, Borchers CH. Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker. Molecular & Cellular Proteomics : McP. 19: 624-639. PMID 33451698 DOI: 10.1074/mcp.RA119.001839  0.344
2020 Makepeace KAT, Mohammed Y, Rudashevskaya EL, Petrotchenko EV, Voegtle FN, Meisinger C, Sickmann A, Borchers CH. Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinker. Molecular & Cellular Proteomics : McP. PMID 32051233 DOI: 10.1074/mcp.RA119.001839  0.344
2019 Silva F, Guirgis A, von Aderkas P, Borchers CH, Thornburg R. LC-MS/MS based comparative proteomics of floral nectars reveal different mechanisms involved in floral defense of Nicotiana spp., Petunia hybrida and Datura stramonium. Journal of Proteomics. 103618. PMID 31846763 DOI: 10.1016/J.Jprot.2019.103618  0.305
2019 Masson GR, Burke JE, Ahn NG, Anand GS, Borchers C, Brier S, Bou-Assaf GM, Engen JR, Englander SW, Faber J, Garlish R, Griffin PR, Gross ML, Guttman M, Hamuro Y, et al. Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments. Nature Methods. 16: 595-602. PMID 31249422 DOI: 10.1038/S41592-019-0459-Y  0.34
2019 Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658  0.396
2018 Popp R, Basik M, Spatz A, Batist G, Zahedi RP, Borchers CH. How iMALDI can improve clinical diagnostics. The Analyst. PMID 29713694 DOI: 10.1039/C8An00094H  0.316
2016 Percy AJ, Yang J, Chambers AG, Mohammed Y, Miliotis T, Borchers CH. Protocol for Standardizing High-to-Moderate Abundance Protein Biomarker Assessments Through an MRM-with-Standard-Peptides Quantitative Approach. Advances in Experimental Medicine and Biology. 919: 515-530. PMID 27975233 DOI: 10.1007/978-3-319-41448-5_24  0.3
2016 Percy AJ, Yang J, Chambers AG, Borchers CH. Increased Depth and Breadth of Plasma Protein Quantitation via Two-Dimensional Liquid Chromatography/Multiple Reaction Monitoring-Mass Spectrometry with Labeled Peptide Standards. Methods in Molecular Biology (Clifton, N.J.). 1410: 1-21. PMID 26867735 DOI: 10.1007/978-1-4939-3524-6_1  0.311
2015 von Aderkas P, Prior N, Gagnon S, Little S, Cross T, Hardie D, Borchers C, Thornburg R, Hou C, Lunny A. Degradome and Secretome of Pollination Drops of Ephedra Botanical Review. 81: 1-27. DOI: 10.1007/S12229-014-9147-X  0.371
2014 Percy AJ, Simon R, Chambers AG, Borchers CH. Enhanced sensitivity and multiplexing with 2D LC/MRM-MS and labeled standards for deeper and more comprehensive protein quantitation. Journal of Proteomics. 106: 113-24. PMID 24769237 DOI: 10.1016/j.jprot.2014.04.024  0.317
2014 Parker CE, Borchers CH. Mass spectrometry based biomarker discovery, verification, and validation--quality assurance and control of protein biomarker assays. Molecular Oncology. 8: 840-58. PMID 24713096 DOI: 10.1016/j.molonc.2014.03.006  0.333
2014 Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, et al. Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Molecular & Cellular Proteomics : McP. 13: 907-17. PMID 24443746 DOI: 10.1074/Mcp.M113.036095  0.362
2013 Prior N, Little SA, Pirone C, Gill JE, Smith D, Han J, Hardie D, O'Leary SJ, Wagner RE, Cross T, Coulter A, Borchers C, Olafson RW, von Aderkas P. Application of proteomics to the study of pollination drops. Applications in Plant Sciences. 1. PMID 25202539 DOI: 10.3732/Apps.1300008  0.386
2013 Eisen D, Planatscher H, Hardie DB, Kraushaar U, Pynn CJ, Stoll D, Borchers C, Joos TO, Poetz O. G protein-coupled receptor quantification using peptide group-specific enrichment combined with internal peptide standard reporter calibration. Journal of Proteomics. 90: 85-95. PMID 23500134 DOI: 10.1016/J.Jprot.2013.02.017  0.313
2012 Orchard S, Binz PA, Borchers C, Gilson MK, Jones AR, Nicola G, Vizcaino JA, Deutsch EW, Hermjakob H. Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA. Proteomics. 12: 2767-72. PMID 22969026 DOI: 10.1002/Pmic.201270126  0.307
2011 Shah B, Kozlowski RL, Han J, Borchers CH. Emerging mass spectrometry-based technologies for analyses of Chromatin changes: Analysis of histones and histone modifications Methods in Molecular Biology. 773: 259-303. PMID 21898261 DOI: 10.1007/978-1-61779-231-1_16  0.327
2010 Hem S, Gherardini PF, Osorio y Fortéa J, Hourdel V, Morales MA, Watanabe R, Pescher P, Kuzyk MA, Smith D, Borchers CH, Zilberstein D, Helmer-Citterich M, Namane A, Späth GF. Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses. Proteomics. 10: 3868-83. PMID 20960452 DOI: 10.1002/Pmic.201000305  0.322
2010 Han J, Borchers CH. Top-down analysis of recombinant histone H3 and its methylated analogs by ESI/FT-ICR mass spectrometry Proteomics. 10: 3621-3630. PMID 20486121 DOI: 10.1002/pmic.201000157  0.309
2010 Helbing CC, Maher SK, Han J, Gunderson MP, Borchers C. Peering into molecular mechanisms of action with frogSCOPE General and Comparative Endocrinology. 168: 190-198. PMID 20074577 DOI: 10.1016/J.Ygcen.2010.01.012  0.3
2009 Elliott MH, Smith DS, Parker CE, Borchers C. Current trends in quantitative proteomics. Journal of Mass Spectrometry : Jms. 44: 1637-60. PMID 19957301 DOI: 10.1002/Jms.1692  0.343
2009 Pan J, Han J, Borchers CH, Konermann L. Hydrogen/deuterium exchange mass spectrometry with top-down electron capture dissociation for characterizing structural transitions of a 17 kDa protein Journal of the American Chemical Society. 131: 12801-12808. PMID 19670873 DOI: 10.1021/Ja904379W  0.323
2009 Sneekes EJ, Han J, Elliot M, Ausio J, Swart R, Heck AJ, Borchers C. Accurate molecular weight analysis of histones using FFE and RP-HPLC on monolithic capillary columns. Journal of Separation Science. 32: 2691-8. PMID 19569095 DOI: 10.1002/Jssc.200800627  0.328
2009 Ouvry-Patat SA, Torres MP, Gelfand CA, Quek HH, Easterling M, Speir JP, Borchers CH. Top-down proteomics on a high-field Fourier transform ion cyclotron resonance mass spectrometer. Methods in Molecular Biology (Clifton, N.J.). 492: 215-31. PMID 19241035 DOI: 10.1007/978-1-59745-493-3_12  0.637
2009 Anderson NL, Jackson A, Smith D, Hardie D, Borchers C, Pearson TW. SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device. Molecular & Cellular Proteomics : McP. 8: 995-1005. PMID 19196707 DOI: 10.1074/Mcp.M800446-Mcp200  0.312
2008 Danell RM, Ouvry-Patat SA, Scarlett CO, Speir JP, Borchers CH. Data Self-Recalibration and Mixture Mass Fingerprint Searching (DASER-MMF) to enhance protein identification within complex mixtures. Journal of the American Society For Mass Spectrometry. 19: 1914-25. PMID 18708289 DOI: 10.1016/J.Jasms.2008.07.017  0.326
2008 Ouvry-Patat SA, Torres MP, Quek HH, Gelfand CA, O'Mullan P, Nissum M, Schroeder GK, Han J, Elliott M, Dryhurst D, Ausio J, Wolfenden R, Borchers CH. Free-flow electrophoresis for top-down proteomics by Fourier transform ion cyclotron resonance mass spectrometry. Proteomics. 8: 2798-808. PMID 18655049 DOI: 10.1002/Pmic.200800079  0.642
2007 Jiang J, Parker CE, Hoadley KA, Perou CM, Boysen G, Borchers CH. Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis. Proteomics. Clinical Applications. 1: 1651-9. PMID 21136662 DOI: 10.1002/Prca.200700009  0.422
2007 Jiang J, Parker CE, Fuller JR, Kawula TH, Borchers CH. An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis. Analytica Chimica Acta. 605: 70-9. PMID 18022413 DOI: 10.1016/J.Aca.2007.10.025  0.39
2007 Torres MP, Borchers CH. Mitotic phosphorylation of the anaphase-promoting complex inhibitory subunit Mnd2 is necessary for efficient progression through meiosis i. The Journal of Biological Chemistry. 282: 17351-62. PMID 17459880 DOI: 10.1074/Jbc.M610841200  0.595
2007 Hao N, Behar M, Parnell SC, Torres MP, Borchers CH, Elston TC, Dohlman HG. A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway. Current Biology : Cb. 17: 659-67. PMID 17363249 DOI: 10.1016/J.Cub.2007.02.044  0.686
2007 Dial JM, Petrotchenko EV, Borchers CH. Inhibition of APCCdh1 activity by Cdh1/Acm1/Bmh1 ternary complex formation. The Journal of Biological Chemistry. 282: 5237-48. PMID 17178718 DOI: 10.1074/jbc.M606589200  0.735
2006 Borchers CH, Thapar R, Petrotchenko EV, Torres MP, Speir JP, Easterling M, Dominski Z, Marzluff WF. Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding. Proceedings of the National Academy of Sciences of the United States of America. 103: 3094-9. PMID 16492733 DOI: 10.1073/Pnas.0511289103  0.642
2005 Warren EN, Jiang J, Parker CE, Borchers CH. Absolute quantitation of cancer-related proteins using an MS-based peptide chip. Biotechniques. 7-11. PMID 16528910 DOI: 10.2144/05386Su01  0.44
2005 Torres MP, Thapar R, Marzluff WF, Borchers CH. Phosphatase-directed phosphorylation-site determination: a synthesis of methods for the detection and identification of phosphopeptides. Journal of Proteome Research. 4: 1628-35. PMID 16212415 DOI: 10.1021/Pr050129D  0.626
2005 Dai Q, Qian SB, Li HH, McDonough H, Borchers C, Huang D, Takayama S, Younger JM, Ren HY, Cyr DM, Patterson C. Regulation of the cytoplasmic quality control protein degradation pathway by BAG2. The Journal of Biological Chemistry. 280: 38673-81. PMID 16169850 DOI: 10.1074/Jbc.M507986200  0.385
2005 Parnell SC, Marotti LA, Kiang L, Torres MP, Borchers CH, Dohlman HG. Phosphorylation of the RGS protein Sst2 by the MAP kinase Fus3 and use of Sst2 as a model to analyze determinants of substrate sequence specificity. Biochemistry. 44: 8159-66. PMID 15924435 DOI: 10.1021/Bi0503091  0.703
2005 Parker CE, Warren MR, Loiselle DR, Dicheva NN, Scarlett CO, Borchers CH. Identification of components of protein complexes Methods in Molecular Biology (Clifton, N.J.). 301: 117-151. PMID 15917630 DOI: 10.1385/1-59259-895-1:117  0.303
2004 Howell M, Borchers C, Milgram SL. Heterogeneous nuclear ribonuclear protein U associates with YAP and regulates its co-activation of Bax transcription. The Journal of Biological Chemistry. 279: 26300-6. PMID 15096513 DOI: 10.1074/Jbc.M401070200  0.372
2003 Furukawa M, He YJ, Borchers C, Xiong Y. Targeting of protein ubiquitination by BTB-Cullin 3-Roc1 ubiquitin ligases. Nature Cell Biology. 5: 1001-7. PMID 14528312 DOI: 10.1038/Ncb1056  0.372
2003 Kast J, Parker CE, van der Drift K, Dial JM, Milgram SL, Wilm M, Howell M, Borchers CH. Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification. Rapid Communications in Mass Spectrometry : Rcm. 17: 1825-34. PMID 12876682 DOI: 10.1002/Rcm.1114  0.728
2003 Huang C, Rajfur Z, Borchers C, Schaller MD, Jacobson K. JNK phosphorylates paxillin and regulates cell migration. Nature. 424: 219-23. PMID 12853963 DOI: 10.1038/Nature01745  0.319
2003 Hall MC, Shcherbakova PV, Fortune JM, Borchers CH, Dial JM, Tomer KB, Kunkel TA. DNA binding by yeast Mlh1 and Pms1: implications for DNA mismatch repair. Nucleic Acids Research. 31: 2025-34. PMID 12682353 DOI: 10.1093/Nar/Gkg324  0.699
2003 Hall MC, Torres MP, Schroeder GK, Borchers CH. Mnd2 and Swm1 are core subunits of the Saccharomyces cerevisiae anaphase-promoting complex. The Journal of Biological Chemistry. 278: 16698-705. PMID 12609981 DOI: 10.1074/Jbc.M213109200  0.585
2002 Han J, Pope M, Borchers C, M Graves L. Mapping of protein phosphorylation by dual enzyme digestion and matrix-assisted laser desorption ionization-quadrupole orthogonal time-of-flight mass spectrometry. Analytical Biochemistry. 310: 215-8. PMID 12423641 DOI: 10.1016/S0003-2697(02)00376-7  0.464
2002 Bruno ME, Borchers CH, Dial JM, Walker NJ, Hartis JE, Wetmore BA, Carl Barrett JC, Tomer KB, Merrick BA. Effects of TCDD upon IkappaB and IKK subunits localized in microsomes by proteomics. Archives of Biochemistry and Biophysics. 406: 153-64. PMID 12361703 DOI: 10.1016/S0003-9861(02)00452-6  0.742
2002 Raska CS, Parker CE, Dominski Z, Marzluff WF, Glish GL, Pope RM, Borchers CH. Direct MALDI-MS/MS of phosphopeptides affinity-bound to immobilized metal ion affinity chromatography beads. Analytical Chemistry. 74: 3429-33. PMID 12139050 DOI: 10.1021/Ac0111199  0.312
2002 Wine RN, Dial JM, Tomer KB, Borchers CH. Identification of components of protein complexes using a fluorescent photo-cross-linker and mass spectrometry. Analytical Chemistry. 74: 1939-45. PMID 12033289 DOI: 10.1021/Ac011041W  0.736
2002 Han J, Pope M, Borchers C, Graves LM. Mapping of protein phosphorylation by dual enzyme digestion and MALDI/quadrupole orthogonal TOF mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 559-560.  0.34
2000 Zhu X, Borchers C, Bienstock RJ, Tomer KB. Mass spectrometric characterization of the glycosylation pattern of HIV-gp120 expressed in CHO cells Biochemistry. 39: 11194-11204. PMID 10985765 DOI: 10.1021/Bi000432M  0.354
2000 Borchers C, Peter JF, Hall MC, Kunkel TA, Tomer KB. Identification of in-gel digested proteins by complementary peptide mass fingerprinting and tandem mass spectrometry data obtained on an electrospray ionization quadrupole time-of-flight mass spectrometer Analytical Chemistry. 72: 1163-1168. PMID 10740854 DOI: 10.1021/ac990937m  0.321
1998 Fiedler W, Borchers C, Macht M, Deininger SO, Przybylski M. Molecular characterization of a conformational epitope of hen egg white lysozyme by differential chemical modification of immune complexes and mass spectrometric peptide mapping Bioconjugate Chemistry. 9: 236-241. PMID 9548539 DOI: 10.1021/Bc970148G  0.336
1994 Glocker MO, Borchers C, Fiedler W, Suckau D, Przybylski M. Molecular characterization of surface topology in protein tertiary structures by amino-acylation and mass spectrometric peptide mapping Bioconjugate Chemistry. 5: 583-590. PMID 7873661 DOI: 10.1021/Bc00030A014  0.385
Low-probability matches (unlikely to be authored by this person)
2014 Pan J, Borchers CH. Top-down mass spectrometry and hydrogen/deuterium exchange for comprehensive structural characterization of interferons: implications for biosimilars. Proteomics. 14: 1249-58. PMID 24574185 DOI: 10.1002/pmic.201300341  0.3
2023 Gaither C, Popp R, Richard VR, Zahedi RP, Borchers CH. Offline Peptide Fractionation and Parallel Reaction Monitoring MS for the Quantitation of Low-Abundance Plasma Proteins. Methods in Molecular Biology (Clifton, N.J.). 2628: 353-364. PMID 36781797 DOI: 10.1007/978-1-0716-2978-9_23  0.3
2020 Ibrahim S, Froehlich B, Aguilar-Mahecha A, Aloyz R, Poetz O, Basik M, Batist G, Zahedi RP, Borchers CH. Using two peptide isotopologues as internal standards for the streamlined quantification of low-abundance proteins by immuno-MRM and immuno-MALDI. Analytical Chemistry. PMID 32786432 DOI: 10.1021/Acs.Analchem.0C02157  0.299
2011 Lahav T, Sivam D, Volpin H, Ronen M, Tsigankov P, Green A, Holland N, Kuzyk M, Borchers C, Zilberstein D, Myler PJ. Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania Faseb Journal. 25: 515-525. PMID 20952481 DOI: 10.1096/Fj.10-157529  0.297
2005 Loiselle DR, Thelin WR, Parker CE, Dicheva NN, Kesner BA, Mocanu V, Wang F, Milgram SL, Warren MR, Borchers CH. Improved protein identification through the use of unstained gels. Journal of Proteome Research. 4: 992-7. PMID 15952747 DOI: 10.1021/Pr049785O  0.294
2022 Brzhozovskiy A, Kononikhin A, Bugrova AE, Kovalev GI, Schmit PO, Kruppa G, Nikolaev EN, Borchers CH. The Parallel Reaction Monitoring-Parallel Accumulation-Serial Fragmentation (prm-PASEF) Approach for Multiplexed Absolute Quantitation of Proteins in Human Plasma. Analytical Chemistry. 94: 2016-2022. PMID 35040635 DOI: 10.1021/acs.analchem.1c03782  0.293
2006 Petrotchenko EV, Pasek D, Elms P, Dokholyan NV, Meissner G, Borchers CH. Combining fluorescence detection and mass spectrometric analysis for comprehensive and quantitative analysis of redox-sensitive cysteines in native membrane proteins. Analytical Chemistry. 78: 7959-66. PMID 17134128 DOI: 10.1021/Ac060238R  0.291
2013 Percy AJ, Chambers AG, Parker CE, Borchers CH. Absolute quantitation of proteins in human blood by multiplexed multiple reaction monitoring mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1000: 167-89. PMID 23585092 DOI: 10.1007/978-1-62703-405-0_13  0.29
2004 Warren EN, Elms PJ, Parker CE, Borchers CH. Development of a protein chip: a MS-based method for quantitation of protein expression and modification levels using an immunoaffinity approach. Analytical Chemistry. 76: 4082-92. PMID 15253646 DOI: 10.1021/Ac049880G  0.289
2014 Pan J, Zhang S, Parker CE, Borchers CH. Subzero temperature chromatography and top-down mass spectrometry for protein higher-order structure characterization: method validation and application to therapeutic antibodies. Journal of the American Chemical Society. 136: 13065-71. PMID 25152011 DOI: 10.1021/ja507880w  0.288
2014 Percy AJ, Chambers AG, Yang J, Hardie DB, Borchers CH. Advances in multiplexed MRM-based protein biomarker quantitation toward clinical utility. Biochimica Et Biophysica Acta. 1844: 917-26. PMID 23806606 DOI: 10.1016/j.bbapap.2013.06.008  0.287
2015 Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Ghosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, ... ... Borchers CH, et al. Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma. Molecular & Cellular Proteomics : McP. PMID 25693799 DOI: 10.1074/Mcp.M114.047050  0.285
2001 Chapin RE, Wine RN, Harris MW, Borchers CH, Haseman JK. Structure and control of a cell-cell adhesion complex associated with spermiation in rat seminiferous epithelium Journal of Andrology. 22: 1030-1052. PMID 11700851  0.284
2010 Garcia-Bailo B, Brenner D, Nielsen D, Lee H, Borchers C, Badawi A, Karmali M, El-Sohemy A. Quantitation of 55 Common Human Plasma Proteins in Healthy Young Adults and Correlation with Body Mass Index and Dietary Patterns Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5322.1  0.284
2001 Merrick BA, Zhou W, Martin KJ, Jeyarajah S, Parker CE, Selkirk JK, Tomer KB, Borchers CH. Site-specific phosphorylation of human p53 protein determined by mass spectrometry. Biochemistry. 40: 4053-66. PMID 11300786 DOI: 10.1021/bi002045i  0.284
2016 Mohammed Y, Bhowmick P, Smith DS, Domanski D, Jackson AM, Michaud SA, Malchow S, Percy AJ, Chambers AG, Palmer A, Zhang S, Sickmann A, Borchers CH. PeptideTracker: A knowledgebase for collecting and storing information on protein concentrations in biological tissues. Proteomics. PMID 27683069 DOI: 10.1002/pmic.201600210  0.283
2008 Parker CE, Warren MRE, Mocanu V, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination Methods in Molecular Biology. 446: 109-130. DOI: 10.1007/978-1-60327-84-7_8  0.283
1999 Borchers C, Parker CE, Deterding LJ, Tomer KB. Preliminary comparison of precursor scans and liquid chromatography-tandem mass spectrometry on a hybrid quadrupole time-of-flight mass spectrometer Journal of Chromatography A. 854: 119-130. PMID 10497933 DOI: 10.1016/S0021-9673(99)00479-3  0.282
2018 Jardim A, Hardie DB, Boitz J, Borchers CH. Proteomic Profiling of Leishmania donovani Promastigote Subcellular Organelles. Journal of Proteome Research. PMID 29332401 DOI: 10.1021/acs.jproteome.7b00817  0.281
2017 M Larina I, Percy AJ, Yang J, Borchers CH, M Nosovsky A, I Grigoriev A, N Nikolaev E. Protein expression changes caused by spaceflight as measured for 18 Russian cosmonauts. Scientific Reports. 7: 8142. PMID 28811532 DOI: 10.1038/s41598-017-08432-w  0.281
2014 Petrotchenko EV, Makepeace KA, Serpa JJ, Borchers CH. Analysis of protein structure by cross-linking combined with mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1156: 447-63. PMID 24792007 DOI: 10.1007/978-1-4939-0685-7_30  0.281
2013 Chambers AG, Percy AJ, Hardie DB, Borchers CH. Comparison of proteins in whole blood and dried blood spot samples by LC/MS/MS. Journal of the American Society For Mass Spectrometry. 24: 1338-45. PMID 23821375 DOI: 10.1007/s13361-013-0678-x  0.28
2015 Tremlett H, Dai DL, Hollander Z, Kapanen A, Aziz T, Wilson-McManus JE, Tebbutt SJ, Borchers CH, Oger J, Cohen Freue GV. Serum proteomics in multiple sclerosis disease progression. Journal of Proteomics. 118: 2-11. PMID 25753122 DOI: 10.1016/j.jprot.2015.02.018  0.28
2006 Robinette D, Neamati N, Tomer KB, Borchers CH. Photoaffinity labeling combined with mass spectrometric approaches as a tool for structural proteomics. Expert Review of Proteomics. 3: 399-408. PMID 16901199 DOI: 10.1586/14789450.3.4.399  0.279
2017 Li H, Popp R, Frohlich B, Chen MX, Borchers CH. Peptide and Protein Quantification Using Automated Immuno-MALDI (iMALDI). Journal of Visualized Experiments : Jove. PMID 28872133 DOI: 10.3791/55933  0.279
2008 Borchers C. The 8th International Conference of the Canadian Proteomics Initiative Expert Review of Proteomics. 5: 549-550. DOI: 10.1586/14789450.5.4.549  0.277
2015 Percy AJ, Yang J, Hardie DB, Chambers AG, Tamura-Wells J, Borchers CH. Precise quantitation of 136 urinary proteins by LC/MRM-MS using stable isotope labeled peptides as internal standards for biomarker discovery and/or verification studies. Methods (San Diego, Calif.). 81: 24-33. PMID 25858257 DOI: 10.1016/j.ymeth.2015.04.001  0.277
2010 Domanski D, Murphy LC, Borchers CH. Assay development for the determination of phosphorylation stoichiometry using multiple reaction monitoring methods with and without phosphatase treatment: Application to breast cancer signaling pathways Analytical Chemistry. 82: 5610-5620. PMID 20524616 DOI: 10.1021/ac1005553  0.275
2017 Popp R, Li H, LeBlanc A, Mohammed Y, Aguilar-Mahecha A, Chambers AG, Lan C, Poetz O, Basik M, Batist G, Borchers CH. Immuno-MALDI (iMALDI) for quantifying AKT1 and AKT2 in breast and colorectal cancer cell lines and tumors. Analytical Chemistry. PMID 28853539 DOI: 10.1021/Acs.Analchem.7B02934  0.274
2009 Kuzyk MA, Smith D, Yang J, Cross TJ, Jackson AM, Hardie DB, Anderson NL, Borchers CH. Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Molecular & Cellular Proteomics : McP. 8: 1860-77. PMID 19411661 DOI: 10.1074/mcp.M800540-MCP200  0.274
2003 Raska CS, Parker CE, Sunnarborg SW, Pope RM, Lee DC, Glish GL, Borchers CH. Rapid and sensitive identification of epitope-containing peptides by direct matrix-assisted laser desorption/ionization tandem mass spectrometry of peptides affinity-bound to antibody beads. Journal of the American Society For Mass Spectrometry. 14: 1076-85. PMID 14530088 DOI: 10.1016/S1044-0305(03)00405-7  0.271
2006 Al-Mawsawi LQ, Fikkert V, Dayam R, Witvrouw M, Burke TR, Borchers CH, Neamati N. Discovery of a small-molecule HIV-1 integrase inhibitor-binding site. Proceedings of the National Academy of Sciences of the United States of America. 103: 10080-5. PMID 16785440 DOI: 10.1073/Pnas.0511254103  0.271
2002 Borchers C, Boer R, Klemm K, Figala V, Denzinger T, Ulrich WR, Haas S, Ise W, Gekeler V, Przybylski M. Characterization of the dexniguldipine binding site in the multidrug resistance-related transport protein P-glycoprotein by photoaffinity labeling and mass spectrometry. Molecular Pharmacology. 61: 1366-76. PMID 12021398 DOI: 10.1124/mol.61.6.1366  0.271
2007 Boysen G, Scarlett CO, Temple B, Combs TP, Brooks NL, Borchers CH, Swenberg JA. Identification of covalent modifications in P450 2E1 by 1,2-epoxy-3-butene in vitro. Chemico-Biological Interactions. 166: 170-5. PMID 17298833 DOI: 10.1016/J.Cbi.2007.01.007  0.269
2009 Kuzyk MA, Ohlund LB, Elliott MH, Smith D, Qian H, Delaney A, Hunter CL, Borchers CH. A comparison of MS/MS-based, stable-isotope-labeled, quantitation performance on ESI-quadrupole TOF and MALDI-TOF/TOF mass spectrometers. Proteomics. 9: 3328-40. PMID 19504495 DOI: 10.1002/pmic.200800412  0.269
2017 Eshghi A, Borchers CH. Multiple Reaction Monitoring Using Double Isotopologue Peptide Standards for Protein Quantification. Methods in Molecular Biology (Clifton, N.J.). PMID 29256172 DOI: 10.1007/7651_2017_112  0.268
2010 Proc JL, Kuzyk MA, Hardie DB, Yang J, Smith DS, Jackson AM, Parker CE, Borchers CH. A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. Journal of Proteome Research. 9: 5422-37. PMID 20722421 DOI: 10.1021/pr100656u  0.267
2014 Petrotchenko EV, Serpa JJ, Makepeace KA, Brodie NI, Borchers CH. (14)N(15)N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using (15)N metabolically labeled proteins. Journal of Proteomics. 109: 104-10. PMID 24972318 DOI: 10.1016/j.jprot.2014.06.014  0.267
2013 Chambers AG, Percy AJ, Yang J, Camenzind AG, Borchers CH. Multiplexed quantitation of endogenous proteins in dried blood spots by multiple reaction monitoring-mass spectrometry. Molecular & Cellular Proteomics : McP. 12: 781-91. PMID 23221968 DOI: 10.1074/mcp.M112.022442  0.265
2021 Petrotchenko EV, Borchers CH. Protein Chemistry Combined with Mass Spectrometry for Protein Structure Determination. Chemical Reviews. PMID 34968047 DOI: 10.1021/acs.chemrev.1c00302  0.265
2019 Parker CE, Warren Hines MRE, Mocanu V, Greer SF, Borchers CH. Mass Spectrometric Determination of Protein Ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 1934: 191-221. PMID 31256381 DOI: 10.1007/978-1-4939-9055-9_13  0.264
2013 Han J, Tschernutter V, Yang J, Eckle T, Borchers CH. Analysis of selected sugars and sugar phosphates in mouse heart tissue by reductive amination and liquid chromatography-electrospray ionization mass spectrometry. Analytical Chemistry. 85: 5965-73. PMID 23682691 DOI: 10.1021/ac400769g  0.264
2002 Elms PJ, Van der Drift K, Borchers CH. Absolute protein quantification for proteomics Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 305-306.  0.263
2017 Pedde RD, Li H, Borchers CH, Akbari M. Microfluidic-Mass Spectrometry Interfaces for Translational Proteomics. Trends in Biotechnology. PMID 28755975 DOI: 10.1016/J.Tibtech.2017.06.006  0.262
2020 Leitner A, Bonvin AMJJ, Borchers CH, Chalkley RJ, Chamot-Rooke J, Combe CW, Cox J, Dong MQ, Fischer L, Götze M, Gozzo FC, Heck AJR, Hoopmann MR, Huang L, Ishihama Y, et al. Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. Structure (London, England : 1993). PMID 33065067 DOI: 10.1016/j.str.2020.09.011  0.262
2021 Bhowmick P, Roome S, Borchers CH, Goodlett DR, Mohammed Y. An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community. Journal of Proteome Research. PMID 33683131 DOI: 10.1021/acs.jproteome.0c00961  0.262
2010 Pan J, Han J, Borchers CH, Konermann L. Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry Analytical Chemistry. 82: 8591-8597. PMID 20849085 DOI: 10.1021/Ac101679J  0.261
2007 Myers-Morales T, Cowan C, Gray ME, Wulff CR, Parker CE, Borchers CH, Straley SC. A surface-focused biotinylation procedure identifies the Yersinia pestis catalase KatY as a membrane-associated but non-surface-located protein. Applied and Environmental Microbiology. 73: 5750-9. PMID 17644638 DOI: 10.1128/Aem.02968-06  0.261
2010 Petrotchenko EV, Borchers CH. Crosslinking combined with mass spectrometry for structural proteomics Mass Spectrometry Reviews. 29: 862-876. PMID 20730915 DOI: 10.1002/mas.20293  0.259
2013 Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, ... ... Borchers CH, et al. Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Molecular & Cellular Proteomics : McP. 12: 2623-39. PMID 23689285 DOI: 10.1074/Mcp.M112.027078  0.259
2008 Pan J, Han J, Borchers CH, Konermann L. Electron capture dissociation of electrosprayed protein ions for spatially resolved hydrogen exchange measurements Journal of the American Chemical Society. 130: 11574-11575. PMID 18686958 DOI: 10.1021/Ja802871C  0.259
2009 Petrotchenko EV, Xiao K, Cable J, Chen Y, Dokholyan NV, Borchers CH. BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics. Molecular & Cellular Proteomics : McP. 8: 273-86. PMID 18838738 DOI: 10.1074/Mcp.M800265-Mcp200  0.259
2024 Michaud SA, Pětrošová H, Sinclair NJ, Kinnear AL, Jackson AM, McGuire JC, Hardie DB, Bhowmick P, Ganguly M, Flenniken AM, Nutter LMJ, McKerlie C, Smith D, Mohammed Y, Schibli D, ... ... Borchers CH, et al. Multiple reaction monitoring assays for large-scale quantitation of proteins from 20 mouse organs and tissues. Communications Biology. 7: 6. PMID 38168632 DOI: 10.1038/s42003-023-05687-0  0.259
2017 Minkley M, Sweeters N, Kasravi S, Ferguson J, Higa A, Jackson A, Smith D, Borchers C, Nashmi R, Macleod P, Neumayr LD, Vichinsky E, Walter PB. Systemic Biomarkers Show Elevated Oxidative Stress and Chronic Inflammation in Two Disorders of Neurodegeneration with Brain Iron Accumulation (NBIA) Blood. 130: 943-943. DOI: 10.1182/Blood.V130.Suppl_1.943.943  0.258
2014 Gudavicius G, Dilworth D, Serpa JJ, Sessler N, Petrotchenko EV, Borchers CH, Nelson CJ. The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit. Rna (New York, N.Y.). 20: 1014-22. PMID 24840943 DOI: 10.1261/rna.042648.113  0.258
2018 Popp R, Li H, Borchers CH. Immuno-MALDI (iMALDI) mass spectrometry for the analysis of proteins in signalling pathways. Expert Review of Proteomics. PMID 30169113 DOI: 10.1080/14789450.2018.1516147  0.257
2016 Percy AJ, Michaud SA, Jardim A, Sinclair NJ, Zhang S, Mohammed Y, Palmer AL, Hardie DB, Yang J, LeBlanc AM, Borchers CH. Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue. Proteomics. PMID 27688154 DOI: 10.1002/pmic.201600097  0.257
2018 Penn AM, Saly V, Trivedi A, Lesperance ML, Votova K, Jackson AM, Croteau NS, Balshaw RF, Bibok MB, Smith DS, Lam KK, Morrison J, Lu L, Coutts SB, Borchers CH. Differential Proteomics for Distinguishing Ischemic Stroke from Controls: a Pilot Study of the SpecTRA Project. Translational Stroke Research. PMID 29368175 DOI: 10.1007/s12975-018-0609-z  0.256
2022 Sobsey CA, Froehlich B, Batist G, Borchers CH. Immuno-MALDI-MS for Accurate Quantitation of Targeted Peptides from Volume-Restricted Samples. Methods in Molecular Biology (Clifton, N.J.). 2515: 203-225. PMID 35776354 DOI: 10.1007/978-1-0716-2409-8_13  0.256
2015 Penn AM, Lu L, Chambers AG, Balshaw RF, Morrison JL, Votova K, Wood E, Smith DS, Lesperance M, Del Zoppo GJ, Borchers CH. Exploring phlebotomy technique as a pre-analytical factor in proteomic analyses by mass spectrometry. Genome / National Research Council Canada = Genome / Conseil National De Recherches Canada. 1-8. PMID 26484650 DOI: 10.1139/gen-2015-0036  0.256
2016 Leung JM, Chen V, Hollander Z, Dai D, Tebbutt SJ, Aaron SD, Vandemheen KL, Rennard SI, FitzGerald JM, Woodruff PG, Lazarus SC, Connett JE, Coxson HO, Miller B, Borchers C, et al. COPD Exacerbation Biomarkers Validated Using Multiple Reaction Monitoring Mass Spectrometry. Plos One. 11: e0161129. PMID 27525416 DOI: 10.1371/Journal.Pone.0161129  0.254
2005 Parker CE, Mocanu V, Warren MR, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 301: 153-73. PMID 15917631 DOI: 10.1385/1-59259-895-1:153  0.253
2004 Hall MC, Warren EN, Borchers CH. Multi-kinase phosphorylation of the APC/C activator Cdh1 revealed by mass spectrometry Cell Cycle. 3: 1278-1284. PMID 15467459  0.253
2009 Anderson NL, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA. A human proteome detection and quantitation project. Molecular & Cellular Proteomics : McP. 8: 883-6. PMID 19131327 DOI: 10.1074/Mcp.R800015-Mcp200  0.252
2014 Petrotchenko EV, Borchers CH. Modern mass spectrometry-based structural proteomics. Advances in Protein Chemistry and Structural Biology. 95: 193-213. PMID 24985773 DOI: 10.1016/B978-0-12-800453-1.00006-3  0.251
2015 Makepeace KA, Serpa JJ, Petrotchenko EV, Borchers CH. Comprehensive identification of disulfide bonds using non-specific proteinase K digestion and CID-cleavable crosslinking analysis methodology for Orbitrap LC/ESI-MS/MS data. Methods (San Diego, Calif.). 89: 74-8. PMID 25752848 DOI: 10.1016/j.ymeth.2015.02.021  0.251
2014 Percy AJ, Yang J, Chambers AG, Simon R, Hardie DB, Borchers CH. Multiplexed MRM with Internal Standards for Cerebrospinal Fluid Candidate Protein Biomarker Quantitation. Journal of Proteome Research. PMID 24911472 DOI: 10.1021/pr500317d  0.251
2011 Bohlmann J, Hall D, Robert J, Keeling C, Domanski D, Quesada AL, Jancsik S, Kuzyk M, Hamberger B, Borchers C. Biomarkers and gene copy number variation for terpenoid traits associated with insect resistance in Sitka spruce: An integrated genomic, proteomic, and biochemical analysis of (+)-3-carene biosynthesis Bmc Proceedings. 5. DOI: 10.1186/1753-6561-5-S7-O27  0.25
2012 Aguilar-Mahecha A, Kuzyk MA, Domanski D, Borchers CH, Basik M. The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines. Plos One. 7: e38290. PMID 22701622 DOI: 10.1371/journal.pone.0038290  0.25
2002 Raska CS, Parker CE, Huang C, Han J, Glish GL, Pope M, Borchers CH. Pseudo-MS3 in a MALDI orthogonal quadrupole-time of flight mass spectrometer. Journal of the American Society For Mass Spectrometry. 13: 1034-41. PMID 12322951 DOI: 10.1016/S1044-0305(02)00433-6  0.25
2020 Froehlich BC, Popp R, Sobsey CA, Ibrahim S, LeBlanc AM, Mohammed Y, Aguilar-Mahecha A, Poetz O, Chen MX, Spatz A, Basik M, Batist G, Zahedi RP, Borchers CH. Systematic Optimization of the iMALDI Workflow for the Robust and Straightforward Quantification of Signalling Proteins in Cancer Cells. Proteomics. Clinical Applications. e2000034. PMID 32643306 DOI: 10.1002/Prca.202000034  0.249
2012 Serpa JJ, Parker CE, Petrotchenko EV, Han J, Pan J, Borchers CH. Mass spectrometry-based structural proteomics. European Journal of Mass Spectrometry (Chichester, England). 18: 251-67. PMID 22641729 DOI: 10.1255/ejms.1178  0.249
2013 Pan J, Borchers CH. Top-down structural analysis of posttranslationally modified proteins by Fourier transform ion cyclotron resonance-MS with hydrogen/deuterium exchange and electron capture dissociation. Proteomics. 13: 974-81. PMID 23319428 DOI: 10.1002/pmic.201200246  0.249
2016 Wang X, Han J, Hardie DB, Yang J, Borchers CH. The use of matrix coating assisted by an electric field (MCAEF) to enhance mass spectrometric imaging of human prostate cancer biomarkers. Journal of Mass Spectrometry : Jms. 51: 86-95. PMID 26757076 DOI: 10.1002/jms.3728  0.249
2021 Percy AJ, Borchers CH. Detailed Method for Performing the ExSTA Approach in Quantitative Bottom-Up Plasma Proteomics. Methods in Molecular Biology (Clifton, N.J.). 2228: 353-384. PMID 33950503 DOI: 10.1007/978-1-0716-1024-4_25  0.247
2020 Eshghi A, Pistawka AJ, Liu J, Chen M, Sinclair NJT, Hardie DB, Elliott M, Chen L, Newman R, Mohammed Y, Borchers CH. Concentration Determination of >200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation. Molecular & Cellular Proteomics : McP. 19: 540-553. PMID 33451688 DOI: 10.1074/mcp.TIR119.001820  0.245
2020 Eshghi A, Pistawka AJ, Liu J, Chen M, Sinclair NJT, Hardie DB, Elliott M, Chen L, Newman R, Mohammed Y, Borchers CH. Concentration determination of >200 proteins in dried blood spots for biomarker discovery and validation. Molecular & Cellular Proteomics : McP. PMID 31896676 DOI: 10.1074/Mcp.Tir119.001820  0.245
2008 Parker CE, Warren MR, Mocanu V, Greer SF, Borchers CH. Mass spectrometric determination of protein ubiquitination. Methods in Molecular Biology (Clifton, N.J.). 446: 109-30. PMID 18373253 DOI: 10.1007/978-1-60327-084-7_8  0.245
2009 Bordeerat NK, Georgieva NI, Klapper DG, Collins LB, Cross TJ, Borchers CH, Swenberg JA, Boysen G. Accurate quantitation of standard peptides used for quantitative proteomics. Proteomics. 9: 3939-44. PMID 19637239 DOI: 10.1002/Pmic.200900043  0.245
2008 Han J, Danell RM, Patel JR, Gumerov DR, Scarlett CO, Speir JP, Parker CE, Rusyn I, Zeisel S, Borchers CH. Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry. Metabolomics : Official Journal of the Metabolomic Society. 4: 128-140. PMID 19081807 DOI: 10.1007/S11306-008-0104-8  0.244
2018 Dilworth D, Gudavicius G, Xu X, Boyce AKJ, O'Sullivan C, Serpa JJ, Bilenky M, Petrochenko EV, Borchers CH, Hirst M, Swayne LA, Howard P, Nelson CJ. The prolyl isomerase FKBP25 regulates microtubule polymerization impacting cell cycle progression and genomic stability. Nucleic Acids Research. PMID 29361176 DOI: 10.1093/Nar/Gky008  0.243
2010 Petrotchenko EV, Borchers CH. ICC-CLASS: Isotopically-coded cleavable crosslinking analysis software suite Bmc Bioinformatics. 11. PMID 20109223 DOI: 10.1186/1471-2105-11-64  0.243
2013 Percy AJ, Chambers AG, Yang J, Borchers CH. Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma. Proteomics. 13: 2202-15. PMID 23592487 DOI: 10.1002/pmic.201200316  0.242
2015 Pan J, Zhang S, Borchers CH. Protein species-specific characterization of conformational change induced by multisite phosphorylation. Journal of Proteomics. PMID 26675311 DOI: 10.1016/j.jprot.2015.12.002  0.241
2014 Yassine HN, Jackson AM, Borges CR, Billheimer D, Koh H, Smith D, Reaven P, Lau SS, Borchers CH. The application of multiple reaction monitoring and multi-analyte profiling to HDL proteins. Lipids in Health and Disease. 13: 8. PMID 24397693 DOI: 10.1186/1476-511X-13-8  0.241
2009 Han J, Datla R, Chan S, Borchers CH. Mass spectrometry-based technologies for high-throughput metabolomics. Bioanalysis. 1: 1665-84. PMID 21083110 DOI: 10.4155/bio.09.158  0.24
2021 Gaither C, Popp R, Borchers SP, Skarphedinsson K, Eiriksson FF, Thorsteinsdóttir M, Mohammed Y, Borchers CH. Performance Assessment of a 125 Human Plasma Peptide Mixture Stored at Room Temperature for Multiple Reaction Monitoring-Mass Spectrometry. Journal of Proteome Research. PMID 34270269 DOI: 10.1021/acs.jproteome.1c00249  0.24
2021 Froehlich BC, Popp R, Sobsey CA, Ibrahim S, LeBlanc A, Mohammed Y, Buchanan M, Aguilar-Mahecha A, Pötz O, Chen MX, Spatz A, Basik M, Batist G, Zahedi RP, Borchers CH. A multiplexed, automated immuno-matrix assisted laser desorption/ionization mass spectrometry assay for simultaneous and precise quantitation of PTEN and p110α in cell lines and tumor tissues. The Analyst. PMID 34585690 DOI: 10.1039/d1an00165e  0.239
2018 Mnatsakanyan R, Shema G, Basik M, Batist G, Borchers CH, Sickmann A, Zahedi RP. Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry. Expert Review of Proteomics. PMID 29893147 DOI: 10.1080/14789450.2018.1483340  0.238
2015 Chambers AG, Percy AJ, Yang J, Borchers CH. Multiple Reaction Monitoring Enables Precise Quantification of 97 Proteins in Dried Blood Spots. Molecular & Cellular Proteomics : McP. 14: 3094-104. PMID 26342038 DOI: 10.1074/mcp.O115.049957  0.237
2022 Gaither C, Popp R, Zahedi RP, Borchers CH. Multiple reaction monitoring-mass spectrometry enables robust quantitation of plasma proteins regardless of whole blood processing delays that may occur in the clinic. Molecular & Cellular Proteomics : McP. 100212. PMID 35182769 DOI: 10.1016/j.mcpro.2022.100212  0.236
2013 Percy AJ, Chambers AG, Yang J, Jackson AM, Domanski D, Burkhart J, Sickmann A, Borchers CH. Method and platform standardization in MRM-based quantitative plasma proteomics. Journal of Proteomics. 95: 66-76. PMID 23933160 DOI: 10.1016/j.jprot.2013.07.026  0.236
2020 Tilburg J, Michaud SA, Maracle CX, Versteeg HH, Borchers CH, van Vlijmen BJM, Mohammed Y. Plasma Protein Signatures of a Murine Venous Thrombosis Model and Slc44a2 Knockout Mice Using Quantitative-Targeted Proteomics. Thrombosis and Haemostasis. 120: 423-436. PMID 32135565 DOI: 10.1055/s-0040-1702229  0.235
2014 Petrotchenko EV, Serpa JJ, Cabecinha AN, Lesperance M, Borchers CH. "Out-gel" tryptic digestion procedure for chemical cross-linking studies with mass spectrometric detection. Journal of Proteome Research. 13: 527-35. PMID 24354799 DOI: 10.1021/Pr400710Q  0.235
2020 Gaither C, Popp R, Mohammed Y, Borchers CH. Determination of the concentration range for 267 proteins from 21 lots of commercial human plasma using highly multiplexed multiple reaction monitoring mass spectrometry. The Analyst. PMID 32255452 DOI: 10.1039/c9an01893j  0.234
2017 Mohammed Y, van Vlijmen BJ, Yang J, Percy AJ, Palmblad M, Borchers CH, Rosendaal FR. Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer. Blood Advances. 1: 1080-1087. PMID 29296750 DOI: 10.1182/Bloodadvances.2017007955  0.233
2012 Clemis EJ, Smith DS, Camenzind AG, Danell RM, Parker CE, Borchers CH. Quantitation of spatially-localized proteins in tissue samples using MALDI-MRM imaging. Analytical Chemistry. 84: 3514-22. PMID 22356211 DOI: 10.1021/Ac202875D  0.232
2019 Shultis D, Mitra P, Huang X, Johnson J, Khattak NA, Gray F, Piper C, Czajka J, Hansen L, Wan B, Chinnaswamy K, Liu L, Wang M, Pan J, Stuckey J, ... ... Borchers CH, et al. Changing the Apoptosis Pathway through Evolutionary Protein Design. Journal of Molecular Biology. PMID 30625288 DOI: 10.1016/J.Jmb.2018.12.016  0.232
2018 Brodie NI, Huguet R, Zhang T, Viner R, Zabrouskov V, Pan J, Petrotchenko EV, Borchers CH. Top-down hydrogen-deuterium exchange analysis of protein structures using ultraviolet photodissociation (UVPD). Analytical Chemistry. PMID 29336549 DOI: 10.1021/acs.analchem.7b03655  0.232
2009 Rodriguez H, Snyder M, Uhlén M, Andrews P, Beavis R, Borchers C, Chalkley RJ, Cho SY, Cottingham K, Dunn M, Dylag T, Edgar R, Hare P, Heck AJ, Hirsch RF, et al. Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles. Journal of Proteome Research. 8: 3689-92. PMID 19344107 DOI: 10.1021/Pr900023Z  0.231
2016 Brodie NI, Petrotchenko EV, Borchers CH. The novel isotopically coded short-range photo-reactive crosslinker 2,4,6-triazido-1,3,5-triazine (TATA) for studying protein structures. Journal of Proteomics. PMID 26931439 DOI: 10.1016/j.jprot.2016.02.024  0.229
2014 Houston S, Russell S, Hof R, Roberts AK, Cullen P, Irvine K, Smith DS, Borchers CH, Tonkin ML, Boulanger MJ, Cameron CE. The multifunctional role of the pallilysin-associated Treponema pallidum protein, Tp0750, in promoting fibrinolysis and extracellular matrix component degradation. Molecular Microbiology. 91: 618-34. PMID 24303899 DOI: 10.1111/Mmi.12482  0.227
2013 Percy AJ, Chambers AG, Smith DS, Borchers CH. Standardized protocols for quality control of MRM-based plasma proteomic workflows. Journal of Proteome Research. 12: 222-33. PMID 23245390 DOI: 10.1021/pr300893w  0.227
2014 Petrotchenko EV, Makepeace KA, Borchers CH. DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 8.18.1-19. PMID 25501944 DOI: 10.1002/0471250953.bi0818s48  0.227
2015 Han J, Borchers CH. Chemical derivatization to enhance metabolomic analysis by LC/ESI-MS Advanced Lc-Ms Applications in Metabolomics. 6-21. DOI: 10.4155/9781910419441.fseb2013.13.80  0.227
2023 Mohammed Y, Goodlett D, Borchers CH. Absolute Quantitative Targeted Proteomics Assays for Plasma Proteins. Methods in Molecular Biology (Clifton, N.J.). 2628: 439-473. PMID 36781801 DOI: 10.1007/978-1-0716-2978-9_27  0.227
2018 Boczonadi V, King MS, Smith AC, Olahova M, Bansagi B, Roos A, Eyassu F, Borchers C, Ramesh V, Lochmüller H, Polvikoski T, Whittaker RG, Pyle A, Griffin H, Taylor RW, et al. Mitochondrial oxodicarboxylate carrier deficiency is associated with mitochondrial DNA depletion and spinal muscular atrophy-like disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 29517768 DOI: 10.1038/Gim.2017.251  0.226
2017 Li H, Popp R, Chen M, MacNamara EM, Juncker D, Borchers CH. Bead-Extractor Assisted Ready-to-use reagent System (BEARS) for immunoprecipitation coupled to MALDI-MS. Analytical Chemistry. PMID 28257572 DOI: 10.1021/acs.analchem.6b04169  0.226
2013 Han J, Gagnon S, Eckle T, Borchers CH. Metabolomic analysis of key central carbon metabolism carboxylic acids as their 3-nitrophenylhydrazones by UPLC/ESI-MS. Electrophoresis. 34: 2891-900. PMID 23580203 DOI: 10.1002/elps.201200601  0.226
2021 Laselva O, Qureshi Z, Zeng ZW, Petrotchenko EV, Ramjeesingh M, Hamilton CM, Huan LJ, Borchers CH, Pomès R, Young R, Bear CE. Identification of binding sites for ivacaftor on the cystic fibrosis transmembrane conductance regulator. Iscience. 24: 102542. PMID 34142049 DOI: 10.1016/j.isci.2021.102542  0.225
2014 Minkley M, Praschberger M, Jackson A, Smith D, Borchers C, Vichinsky E, Sweeters N, Macleod P, Walter P. Multiplex Multiple Reaction Monitoring (MRM) Proteomic Investigation Reveals Altered Iron Trafficking and Elevated Systemic Oxidative Stress (OS) and Inflammatory Biomarkers in a Patient with Neurodegeneration with Brain Iron Accumulation (NBIA) Free Radical Biology and Medicine. 76: S106. DOI: 10.1016/J.Freeradbiomed.2014.10.261  0.224
2016 Sobsey CA, Han J, Lin K, Swardfager W, Levitt A, Borchers CH. Development and evaluation of a liquid chromatography-mass spectrometry method for rapid, accurate quantitation of malondialdehyde in human plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1029: 205-212. PMID 27437618 DOI: 10.1016/J.Jchromb.2016.07.013  0.223
2009 Cohen Freue G, Lin D, Imai C, Ignaszewski A, Mancini J, Hollander Z, Bergman A, Sasaki M, Wilson-McManus J, Balshaw R, Ng R, Borchers C, Keown P, McManus B, McMaster R. 341: Proteomic Biomarkers of Chronic Heart Allograft Rejection The Journal of Heart and Lung Transplantation. 28: S184. DOI: 10.1016/J.Healun.2008.11.348  0.223
2022 Laselva O, Petrotchenko EV, Hamilton CM, Qureshi Z, Borchers CH, Young RN, Bear CE. A protocol for identifying the binding sites of small molecules on the cystic fibrosis transmembrane conductance regulator (CFTR) protein. Star Protocols. 3: 101258. PMID 35434660 DOI: 10.1016/j.xpro.2022.101258  0.223
2017 Abbatiello SE, Ackermann BL, Borchers CH, Bradshaw RA, Carr SA, Chalkley RJ, Choi M, Deutsch EW, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss MJ, MacLean B, et al. New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins. Molecular & Cellular Proteomics : McP. PMID 28183812 DOI: 10.1074/Mcp.E117.067801  0.221
2015 Han J, Liu Y, Wang R, Yang J, Ling V, Borchers CH. Metabolic profiling of bile acids in human and mouse blood by LC-MS/MS in combination with phospholipid-depletion solid-phase extraction. Analytical Chemistry. 87: 1127-36. PMID 25496250 DOI: 10.1021/Ac503816U  0.221
2011 Walkey CJ, Luo Z, Borchers CH, Measday V, van Vuuren HJ. The Saccharomyces cerevisiae fermentation stress response protein Igd1p/Yfr017p regulates glycogen levels by inhibiting the glycogen debranching enzyme. Fems Yeast Research. 11: 499-508. PMID 21585652 DOI: 10.1111/j.1567-1364.2011.00740.x  0.221
2016 Knight D, Grainge C, Hogg J, Han J, Borchers C, Waters D, Schuliga M, Vanaudenaerde B, Mutsaers S, Prele C, Laurent G, Burgess J. Using Maldi-imaging to investigate region-specific proteome in IPF Lung Qjm: An International Journal of Medicine. 109. DOI: 10.1093/Qjmed/Hcw128.002  0.219
2023 Mohammed Y, Tran K, Carlsten C, Ryerson C, Wong A, Lee T, Cheng MP, Vinh DC, Lee TC, Winston BW, Sweet D, Boyd JH, Walley KR, Haljan G, McGeer A, ... ... Borchers CH, et al. Proteomic Evolution from Acute to Post-COVID-19 Conditions. Journal of Proteome Research. PMID 38048423 DOI: 10.1021/acs.jproteome.3c00324  0.218
2015 Petrotchenko EV, Borchers CH. HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments. Journal of the American Society For Mass Spectrometry. 26: 1895-8. PMID 26162650 DOI: 10.1007/s13361-015-1213-z  0.218
2020 Michaud SA, Pětrošová H, Jackson AM, McGuire JC, Sinclair NJ, Ganguly M, Flenniken AM, Nutter LMJ, McKerlie C, Schibli D, Smith D, Borchers CH. Process and Workflow for Preparation of Disparate Mouse Tissues for Proteomic Analysis. Journal of Proteome Research. PMID 33151080 DOI: 10.1021/acs.jproteome.0c00399  0.217
2013 Kuzyk MA, Parker CE, Domanski D, Borchers CH. Development of MRM-based assays for the absolute quantitation of plasma proteins. Methods in Molecular Biology (Clifton, N.J.). 1023: 53-82. PMID 23765619 DOI: 10.1007/978-1-4614-7209-4_4  0.217
2019 Pires ES, Hardoim CCP, Miranda KR, Secco DA, Lobo LA, de Carvalho DP, Han J, Borchers CH, Ferreira RBR, Salles JF, Domingues RMCP, Antunes LCM. The Gut Microbiome and Metabolome of Two Riparian Communities in the Amazon. Frontiers in Microbiology. 10: 2003. PMID 31555238 DOI: 10.3389/Fmicb.2019.02003  0.217
2000 Hochleitner EO, Borchers C, Parker C, Bienstock RJ, Tomer KB. Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis Protein Science. 9: 487-496. PMID 10752610  0.217
2012 Fischer K, Da Costa LA, García-Bailo B, Borchers CH, El-Sohemy A. Glutathione S-transferase (GST) M1, but not GSTT1, genotype influences plasma proteomic profiles in Caucasian and East Asian young adults. Journal of Proteome Research. 11: 5022-33. PMID 22946785 DOI: 10.1021/Pr3005887  0.216
2019 Teixeira F, Tse E, Castro H, Makepeace KAT, Meinen BA, Borchers CH, Poole LB, Bardwell JC, Tomás AM, Southworth DR, Jakob U. Chaperone activation and client binding of a 2-cysteine peroxiredoxin. Nature Communications. 10: 659. PMID 30737390 DOI: 10.2210/Pdb6E0G/Pdb  0.216
2011 Petrotchenko EV, Yamaguchi N, Pasek DA, Borchers CH, Meissner G. Mass spectrometric analysis and mutagenesis predict involvement of multiple cysteines in redox regulation of the skeletal muscle ryanodine receptor ion channel complex. Research and Reports in Biology. 2011: 13-21. PMID 21603587 DOI: 10.2147/RRB.S15776  0.215
1992 Borchers C, Suckau D, Mak M, Przybylski M. 014 Molecular analysis of surface topology and microenvironment in protein tertiary structures by selective chemical modification and mass spectrometric peptide mapping Fresenius' Journal of Analytical Chemistry. 343: 64-65. DOI: 10.1007/BF00332008  0.215
2012 Chen YT, Chen HW, Domanski D, Smith DS, Liang KH, Wu CC, Chen CL, Chung T, Chen MC, Chang YS, Parker CE, Borchers CH, Yu JS. Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. Journal of Proteomics. 75: 3529-45. PMID 22236518 DOI: 10.1016/j.jprot.2011.12.031  0.215
2009 Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature Biotechnology. 27: 633-41. PMID 19561596 DOI: 10.1038/Nbt.1546  0.215
2016 Groitl B, Horowitz S, Makepeace KA, Petrotchenko EV, Borchers CH, Reichmann D, Bardwell JC, Jakob U. Protein unfolding as a switch from self-recognition to high-affinity client binding. Nature Communications. 7: 10357. PMID 26787517 DOI: 10.1038/Ncomms10357  0.214
2020 Nikolaev EN, Indeykina MI, Brzhozovskiy AG, Bugrova AE, Kononikhin AS, Starodubtseva NL, Petrotchenko EV, Kovalev GI, Borchers CH, Sukhikh GT. Mass Spectrometric detection of SARS-CoV-2 virus in scrapings of the epithelium of the nasopharynx of infected patients via Nucleocapsid N protein. Journal of Proteome Research. PMID 32786682 DOI: 10.1021/acs.jproteome.0c00412  0.214
2011 Petrotchenko EV, Serpa JJ, Borchers CH. An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics Molecular and Cellular Proteomics. 10. PMID 20622150 DOI: 10.1074/mcp.M110.001420  0.214
2018 Michaud SA, Sinclair NJ, Pětrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y, Eshghi A, Richard VR, Sickmann A, Borchers CH. Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Communications Biology. 1: 78. PMID 30271959 DOI: 10.1038/s42003-018-0087-6  0.213
2010 Freue GV, Sasaki M, Meredith A, Günther OP, Bergman A, Takhar M, Mui A, Balshaw RF, Ng RT, Opushneva N, Hollander Z, Li G, Borchers CH, Wilson-McManus J, McManus BM, et al. Proteomic signatures in plasma during early acute renal allograft rejection. Molecular & Cellular Proteomics : McP. 9: 1954-67. PMID 20501940 DOI: 10.1074/Mcp.M110.000554  0.213
2013 Camenzind AG, van der Gugten JG, Popp R, Holmes DT, Borchers CH. Development and evaluation of an immuno-MALDI (iMALDI) assay for angiotensin I and the diagnosis of secondary hypertension. Clinical Proteomics. 10: 20. PMID 24359218 DOI: 10.1186/1559-0275-10-20  0.213
2019 Boczonadi V, King MS, Smith AC, Olahova M, Bansagi B, Roos A, Eyassu F, Borchers C, Ramesh V, Lochmüller H, Polvikoski T, Whittaker RG, Pyle A, Griffin H, Taylor RW, et al. Correction: Mitochondrial oxodicarboxylate carrier deficiency is associated with mitochondrial DNA depletion and spinal muscular atrophy-like disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 31028354 DOI: 10.1038/S41436-019-0506-1  0.212
2013 Shah B, Reid JD, Kuzyk MA, Parker CE, Borchers CH. Developing an iMALDI method. Methods in Molecular Biology (Clifton, N.J.). 1023: 97-120. PMID 23765621 DOI: 10.1007/978-1-4614-7209-4_6  0.212
2011 Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers C, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, et al. The human proteome project: Current state and future direction. Molecular & Cellular Proteomics : McP. PMID 21531903 DOI: 10.1074/mcp.O111.009993  0.212
2011 Leung C, Utokaparch S, Sharma A, Yu C, Abraham T, Borchers C, Bernatchez P. Proteomic identification of dysferlin-interacting protein complexes in human vascular endothelium. Biochemical and Biophysical Research Communications. 415: 263-9. PMID 22037454 DOI: 10.1016/j.bbrc.2011.10.031  0.212
2015 Wang X, Han J, Yang J, Pan J, Borchers CH. Matrix coating assisted by an electric field (MCAEF) for enhanced tissue imaging by MALDI-MS Chemical Science. 6: 729-738. DOI: 10.1039/c4sc01850h  0.212
2015 Wang X, Han J, Yang J, Pan J, Borchers CH. Matrix coating assisted by an electric field (MCAEF) for enhanced tissue imaging by MALDI-MS. Chemical Science. 6: 729-738. PMID 28706636 DOI: 10.1039/c4sc01850h  0.212
2015 Percy AJ, Mohammed Y, Yang J, Borchers CH. A standardized kit for automated quantitative assessment of candidate protein biomarkers in human plasma. Bioanalysis. PMID 26626236 DOI: 10.4155/bio.15.222  0.211
2005 Petrotchenko EV, Olkhovik VK, Borchers CH. Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes Molecular and Cellular Proteomics. 4: 1167-1179. PMID 15901824 DOI: 10.1074/mcp.T400016-MCP200  0.211
2013 Nyakas A, Han J, Peru KM, Headley JV, Borchers CH. Comprehensive analysis of oil sands processed water by direct-infusion Fourier-transform ion cyclotron resonance mass spectrometry with and without offline UHPLC sample prefractionation. Environmental Science & Technology. 47: 4471-9. PMID 23566025 DOI: 10.1021/es400813s  0.211
2012 Petrotchenko EV, Serpa JJ, Hardie DB, Berjanskii M, Suriyamongkol BP, Wishart DS, Borchers CH. Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins. Molecular & Cellular Proteomics : McP. 11: M111.013524. PMID 22438564 DOI: 10.1074/Mcp.M111.013524  0.211
2001 Wang H, Cao R, Xia L, Erdjument-Bromage H, Borchers C, Tempst P, Zhang Y. Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase Molecular Cell. 8: 1207-1217. PMID 11779497 DOI: 10.1016/S1097-2765(01)00405-1  0.211
2015 Popp R, Malmström D, Chambers AG, Lin D, Camenzind AG, van der Gugten JG, Holmes DT, Pugia M, Jaremek M, Cornett S, Suckau D, Borchers CH. An automated assay for the clinical measurement of plasma renin activity by immuno-MALDI (iMALDI). Biochimica Et Biophysica Acta. 1854: 547-58. PMID 25461795 DOI: 10.1016/j.bbapap.2014.10.008  0.21
2009 Zulak KG, Lippert DN, Kuzyk MA, Domanski D, Chou T, Borchers CH, Bohlmann J. Targeted proteomics using selected reaction monitoring reveals the induction of specific terpene synthases in a multi-level study of methyl jasmonate-treated Norway spruce (Picea abies). The Plant Journal : For Cell and Molecular Biology. 60: 1015-30. PMID 19754519 DOI: 10.1111/j.1365-313X.2009.04020.x  0.21
2016 Percy AJ, Hardie DB, Jardim A, Yang J, Elliott MH, Zhang S, Borchers CH. Multiplexed panel of precisely quantified salivary proteins for biomarker assessment. Proteomics. PMID 27538354 DOI: 10.1002/pmic.201600230  0.209
2015 Han J, Lin K, Sequeira C, Borchers CH. An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography-tandem mass spectrometry. Analytica Chimica Acta. 854: 86-94. PMID 25479871 DOI: 10.1016/j.aca.2014.11.015  0.209
2016 Baker TC, Han J, Borchers CH. Recent advancements in matrix-assisted laser desorption/ionization mass spectrometry imaging. Current Opinion in Biotechnology. 43: 62-69. PMID 27690313 DOI: 10.1016/j.copbio.2016.09.003  0.209
2023 Petrotchenko EV, Nascimento EM, Witt JM, Borchers CH. Determination of Protein Monoclonal-Antibody Epitopes by a Combination of Structural Proteomics Methods. Journal of Proteome Research. PMID 37526474 DOI: 10.1021/acs.jproteome.3c00159  0.209
2014 El Magraoui F, Eisenacher M, Schrötter A, Kuhlmann K, Heinsen H, Andrén P, Nilsson P, Häggmark A, Schmitz G, Verhaert P, Borchers C, Yoo JS, Lee BH, Meyer HE, Grinberg LT. Developing new methods to answer old and new questions in neurodegenerative diseases: 21(st) Workshop of the HUPO Brain Proteome Project (HBPP) 23-24 January 2014, Honolulu, Hawaii. Proteomics. 14: 1308-10. PMID 24753468 DOI: 10.1002/Pmic.201470083  0.209
2014 Mohammed Y, DomaÅ„ski D, Jackson AM, Smith DS, Deelder AM, Palmblad M, Borchers CH. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics. 106: 151-61. PMID 24769191 DOI: 10.1016/J.Jprot.2014.04.018  0.209
2015 Mohammed Y, Borchers CH. An extensive library of surrogate peptides for all human proteins. Journal of Proteomics. 129: 93-7. PMID 26232110 DOI: 10.1016/j.jprot.2015.07.025  0.208
2018 Bhowmick P, Mohammed Y, Borchers CH. MRMAssayDB: an integrated resource for validated targeted proteomics assays. Bioinformatics (Oxford, England). PMID 29762640 DOI: 10.1093/bioinformatics/bty385  0.208
2015 Jamnik J, Garcia-Bailo B, Borchers C, El-Sohemy A. Effects of Gluten on the Plasma Proteome in Humans The Faseb Journal. 29. DOI: 10.1096/Fasebj.29.1_Supplement.275.3  0.207
2014 Dang X, Scotcher J, Wu S, Chu RK, Tolić N, Ntai I, Thomas PM, Fellers RT, Early BP, Zheng Y, Durbin KR, Leduc RD, Wolff JJ, Thompson CJ, Pan J, ... ... Borchers CH, et al. The first pilot project of the consortium for top-down proteomics: a status report. Proteomics. 14: 1130-40. PMID 24644084 DOI: 10.1002/Pmic.201300438  0.205
2012 Wicki-Stordeur LE, Mohammed Al Faresi N, Almehdi AM, Smith DS, Borchers CH, Pearson TW, Haddow JD. Differential protein expression in normal and trisomic cell lines from murine cerebral cortex measured by itraq and Mass Spectrometry Mediterranean Journal of Chemistry. 2: 438-458. DOI: 10.13171/Mjc.2.2.2012.12.12.06  0.205
2014 Chambers AG, Percy AJ, Simon R, Borchers CH. MRM for the verification of cancer biomarker proteins: recent applications to human plasma and serum. Expert Review of Proteomics. 11: 137-48. PMID 24476379 DOI: 10.1586/14789450.2014.877346  0.205
2013 Pecks U, Wölter M, Borchers C, Smith D, Maass N, Glocker M, Rath W. Apolipoprotein profiling im Nabelschnurblut bei IUGR Kindern Geburtshilfe Und Frauenheilkunde. 73. DOI: 10.1055/S-0033-1347756  0.205
2007 Bhati R, Gökmen-Polar Y, Sledge GW, Fan C, Nakshatri H, Ketelsen D, Borchers CH, Dial MJ, Patterson C, Klauber-DeMore N. 2-methoxyestradiol inhibits the anaphase-promoting complex and protein translation in human breast cancer cells. Cancer Research. 67: 702-8. PMID 17234781 DOI: 10.1158/0008-5472.Can-06-3406  0.205
2004 Huang C, Borchers CH, Schaller MD, Jacobson K. Phosphorylation of paxillin by p38MAPK is involved in the neurite extension of PC-12 cells. The Journal of Cell Biology. 164: 593-602. PMID 14970194 DOI: 10.1083/Jcb.200307081  0.203
2014 Petrotchenko EV, Borchers CH. Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data. Proteomics. 14: 1987-9. PMID 24895266 DOI: 10.1002/pmic.201300486  0.202
2011 Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers CH, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, et al. The human proteome project: current state and future direction. Molecular & Cellular Proteomics : McP. 10: M111.009993. PMID 21742803 DOI: 10.1074/Mcp.M111.009993  0.201
2006 Inoue K, Borchers CH, Negishi M. Cohesin protein SMC1 represses the nuclear receptor CAR-mediated synergistic activation of a human P450 gene by xenobiotics. The Biochemical Journal. 398: 125-33. PMID 16623664 DOI: 10.1042/BJ20060109  0.201
2017 Mohammed Y, Pan J, Zhang S, Han J, Borchers CH. ExSTA: External Standard Addition Method for Accurate High-throughput Quantitation in Targeted Proteomics Experiments. Proteomics. Clinical Applications. PMID 28895300 DOI: 10.1002/prca.201600180  0.201
2013 Pecks U, Wölter M, Borchers C, Smith D, Maass N, Glocker M, Rath W. PP032. Apolipoprotein profiling in umbilical cord blood of intrauterine growth restricted (IUGR) neonates. Pregnancy Hypertension. 3: 78. PMID 26105887 DOI: 10.1016/J.Preghy.2013.04.059  0.2
2005 Esteban Warren MR, Parker CE, Mocanu V, Klapper D, Borchers CH. Electrospray ionization tandem mass spectrometry of model peptides reveals diagnostic fragment ions for protein ubiquitination Rapid Communications in Mass Spectrometry. 19: 429-437. PMID 15655800 DOI: 10.1002/rcm.1798  0.2
2020 Richard VR, Zahedi RP, Eintracht S, Borchers CH. An LC-MRM assay for the quantification of metanephrines from dried blood spots for the diagnosis of pheochromocytomas and paragangliomas. Analytica Chimica Acta. 1128: 140-148. PMID 32825898 DOI: 10.1016/j.aca.2020.06.020  0.199
2013 Serpa JJ, Patterson AP, Pan J, Han J, Wishart DS, Petrotchenko EV, Borchers CH. Using multiple structural proteomics approaches for the characterization of prion proteins. Journal of Proteomics. 81: 31-42. PMID 23085224 DOI: 10.1016/j.jprot.2012.10.008  0.199
2016 Canals F, Elortza F, Paradela A, Corthals G, Camenzuli M, Muñoz A, Schiltz O, Gonzalez de Peredo A, Sickman A, Borchers C, Corrales FJ. The EuPA Standardization Initiative Eupa Open Proteomics. 11: 31-32. DOI: 10.1016/J.Euprot.2016.03.007  0.199
2013 Cohen Freue GV, Meredith A, Smith D, Bergman A, Sasaki M, Lam KK, Hollander Z, Opushneva N, Takhar M, Lin D, Wilson-McManus J, Balshaw R, Keown PA, Borchers CH, McManus B, et al. Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation. Plos Computational Biology. 9: e1002963. PMID 23592955 DOI: 10.1371/Journal.Pcbi.1002963  0.199
2017 LeBlanc A, Michaud SA, Percy AJ, Hardie DB, Yang J, Sinclair NJ, Proudfoot JI, Pistawka A, Smith DS, Borchers CH. Multiplexed MRM-based Protein Quantitation Using Two Different Stable Isotope Labeled Peptides for Calibration. Journal of Proteome Research. PMID 28516774 DOI: 10.1021/acs.jproteome.7b00094  0.198
2017 Li H, Han J, Pan J, Liu T, Parker CE, Borchers CH. Current Trends in Quantitative Proteomics -- an update. Journal of Mass Spectrometry : Jms. PMID 28418607 DOI: 10.1002/jms.3932  0.197
2002 Van Der Drift K, Hall MC, Elms P, Borchers CH. Characterization of the proteome based on molecular weight determination of intact proteins combined with peptide mapping Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 181-182.  0.197
2015 Han J, Parker CE, Borchers CH. Advanced LC-MS applications in metabolomics Advanced Lc-Ms Applications in Metabolomics. 1-109. DOI: 10.4155/9781910419441  0.196
2020 Chen D, Han J, Yang J, Schibli D, Zhang Z, Borchers CH. Supermolecule-assisted imaging of low-molecular-weight quaternary-ammonium compounds by MALDI-MS of their non-covalent complexes with cucurbit[7]uril. Rsc Advances. 10: 34261-34265. PMID 35519074 DOI: 10.1039/d0ra04604c  0.196
2014 Quan S, Wang L, Petrotchenko EV, Makepeace KA, Horowitz S, Yang J, Zhang Y, Borchers CH, Bardwell JC. Super Spy variants implicate flexibility in chaperone action. Elife. 3: e01584. PMID 24497545 DOI: 10.7554/Elife.01584  0.194
2015 Horvatovich P, Lundberg EK, Chen YJ, Sung TY, He F, Nice EC, Goode RJ, Yu S, Ranganathan S, Baker MS, Domont GB, Velasquez E, Li D, Liu S, Wang Q, ... ... Borchers CH, et al. Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project. Journal of Proteome Research. PMID 26076068 DOI: 10.1021/Pr5013009  0.193
2021 Mohammed Y, Michaud SA, Pětrošová H, Yang J, Ganguly M, Schibli D, Flenniken AM, Nutter LMJ, Adissu HA, Lloyd KCK, McKerlie C, Borchers CH. Proteotyping of knockout mouse strains reveals sex- and strain-specific signatures in blood plasma. Npj Systems Biology and Applications. 7: 25. PMID 34050187 DOI: 10.1038/s41540-021-00184-8  0.193
2012 Wilson-McManus J, Hollander Z, Cohen Freue G, Balshaw R, Borchers C, Davies R, Delgado D, Haddad H, Ignaszewski A, Isaac D, Kim D, Mui A, Rajda M, West L, White M, et al. 82 Blood-Based Biomarker Panels for Diagnosis of Acute Heart Allograft Rejection The Journal of Heart and Lung Transplantation. 31: S36-S37. DOI: 10.1016/J.Healun.2012.01.086  0.191
2016 Pan J, Zhang S, Borchers CH. Comparative higher-order structure analysis of antibody biosimilars using combined bottom-up and top-down hydrogen-deuterium exchange mass spectrometry. Biochimica Et Biophysica Acta. PMID 27569733 DOI: 10.1016/j.bbapap.2016.08.013  0.19
2018 Han J, Higgins R, Lim MD, Atkinson K, Yang J, Lin K, Borchers CH. Isotope-labeling derivatization with 3-nitrophenylhydrazine for LC/multiple-reaction monitoring-mass-spectrometry-based quantitation of carnitines in dried blood spots. Analytica Chimica Acta. 1037: 177-187. PMID 30292292 DOI: 10.1016/j.aca.2018.01.045  0.19
2018 Zahedi RP, Parker CE, Borchers CH. Immuno-MALDI-TOF-MS in the Clinic. Clinical Chemistry. PMID 30018057 DOI: 10.1373/clinchem.2018.292136  0.19
2021 Mohammed Y, Bhowmick P, Michaud SA, Sickmann A, Borchers CH. Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays. Bioinformatics (Oxford, England). PMID 33483739 DOI: 10.1093/bioinformatics/btab018  0.19
2017 Richard VR, Domanski D, Percy AJ, Borchers CH. An online 2D-reversed-phase - Reversed-phase chromatographic method for sensitive and robust plasma protein quantitation. Journal of Proteomics. PMID 28757464 DOI: 10.1016/j.jprot.2017.07.018  0.19
2014 Parker CE, Domanski D, Percy AJ, Chambers AG, Camenzind AG, Smith DS, Borchers CH. Mass spectrometry in high-throughput clinical biomarker assays: multiple reaction monitoring. Topics in Current Chemistry. 336: 117-37. PMID 22886709 DOI: 10.1007/128_2012_353  0.189
2012 Mason DR, Reid JD, Camenzind AG, Holmes DT, Borchers CH. Duplexed iMALDI for the detection of angiotensin I and angiotensin II. Methods (San Diego, Calif.). 56: 213-22. PMID 22387391 DOI: 10.1016/j.ymeth.2012.02.006  0.188
2021 Ibrahim S, Lan C, Chabot C, Mitsa G, Buchanan M, Aguilar-Mahecha A, Elchebly M, Poetz O, Spatz A, Basik M, Batist G, Zahedi RP, Borchers CH. Precise Quantitation of PTEN by Immuno-MRM: A Tool To Resolve the Breast Cancer Biomarker Controversy. Analytical Chemistry. PMID 34324311 DOI: 10.1021/acs.analchem.1c00975  0.188
2007 Reid JD, Parker CE, Borchers CH. Protein arrays for biomarker discovery Current Opinion in Molecular Therapeutics. 9: 216-221. PMID 17608019  0.188
2022 Preston SEJ, Richard VR, Del Rincón SV, Borchers CH, Zahedi RP. Proteomic Assessment of the Murine Mammary Gland Extracellular Matrix. Methods in Molecular Biology (Clifton, N.J.). 2614: 261-271. PMID 36587130 DOI: 10.1007/978-1-0716-2914-7_16  0.187
2002 Borchers CH, Hochleitner EO, Tomer KB, Neamati N. Mass spectrometric approaches combined with photoaffinity labeling and molecular modeling for structural characterization of drug binding sites in HIV-integrase Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 351-352.  0.186
2014 Hollander Z, Lam K, Wilson-McManus J, Assadian S, Dai D, Shannon C, Chen V, Tebbutt S, Balshaw R, Borchers C, Davies R, Delgado D, Haddad H, Ignaszewski A, Isaac D, et al. Blood Test to Monitor for the Absence of Acute Cardiac Rejection: From Discovery to Clinical Implementation The Journal of Heart and Lung Transplantation. 33: S26. DOI: 10.1016/J.Healun.2014.01.099  0.186
2016 Borchers C, Thibault P. Introduction to the HUPO 2015 Special Issue. Journal of Proteomics. 149: 1-2. PMID 27776693 DOI: 10.1016/J.Jprot.2016.09.013  0.185
2023 Qasrawi DO, Petrotchenko EV, Borchers CH. Amino acid analysis for peptide quantitation using reversed-phase liquid chromatography combined with multiple reaction monitoring mass spectrometry. Analytical and Bioanalytical Chemistry. PMID 37468754 DOI: 10.1007/s00216-023-04840-2  0.184
2013 Percy AJ, Byrns S, Chambers AG, Borchers CH. Targeted quantitation of CVD-linked plasma proteins for biomarker verification and validation. Expert Review of Proteomics. 10: 567-78. PMID 24206229 DOI: 10.1586/14789450.2013.856763  0.184
2003 Zheng L, Dominski Z, Yang XC, Elms P, Raska CS, Borchers CH, Marzluff WF. Phosphorylation of stem-loop binding protein (SLBP) on two threonines triggers degradation of SLBP, the sole cell cycle-regulated factor required for regulation of histone mRNA processing, at the end of S phase Molecular and Cellular Biology. 23: 1590-1601. PMID 12588979 DOI: 10.1128/Mcb.23.5.1590-1601.2003  0.184
2016 Bautista-López NL, Ndao M, Camargo FV, Nara T, Annoura T, Hardie DB, Borchers CH, Jardim A. Characterization and diagnostic application of Trypanosoma cruzi trypomastigote excreted-secreted antigens shed in extracellular vesicles released from infected mammalian cells. Journal of Clinical Microbiology. PMID 27974541 DOI: 10.1128/JCM.01649-16  0.182
2023 Prabhu SA, Moussa O, Gonçalves C, LaPierre JH, Chou H, Huang F, Richard VR, Ferruzo PYM, Guettler EM, Soria-Bretones I, Kirby L, Gagnon N, Su J, Silvester J, Krisna SS, ... ... Borchers CH, et al. Inhibition of the MNK1/2-eIF4E Axis Augments Palbociclib-Mediated Antitumor Activity in Melanoma and Breast Cancer. Molecular Cancer Therapeutics. 22: 192-204. PMID 36722142 DOI: 10.1158/1535-7163.MCT-22-0092  0.181
2011 Pan J, Han J, Borchers CH, Konermann L. Conformer-specific hydrogen exchange analysis of Aβ(1-42) oligomers by top-down electron capture dissociation mass spectrometry Analytical Chemistry. 83: 5386-5393. PMID 21635007 DOI: 10.1021/Ac200906V  0.18
1999 Sinclair C, Borchers C, Parker C, Tomer K, Charbonneau H, Rossie S. The tetratricopeptide repeat domain and a C-terminal region control the activity of Ser/Thr protein phosphatase 5 Journal of Biological Chemistry. 274: 23666-23672. PMID 10438550 DOI: 10.1074/jbc.274.33.23666  0.18
2022 Parra ALC, Freitas CDT, Souza PFN, von Aderkas P, Borchers CH, Beattie GA, Silva FDA, Thornburg RW. Ornamental tobacco floral nectar is a rich source of antimicrobial peptides. Plant Science : An International Journal of Experimental Plant Biology. 324: 111427. PMID 36007629 DOI: 10.1016/j.plantsci.2022.111427  0.18
2001 Petrotchenko EV, Pedersen LC, Borchers CH, Tomer KB, Negishi M. The dimerization motif of cytosolic sulfotransferases Febs Letters. 490: 39-43. PMID 11172807 DOI: 10.1016/S0014-5793(01)02129-9  0.179
2012 Percy AJ, Chambers AG, Yang J, Domanski D, Borchers CH. Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins. Analytical and Bioanalytical Chemistry. 404: 1089-101. PMID 22547352 DOI: 10.1007/s00216-012-6010-y  0.179
2010 Petrotchenko EV, Serpa JJ, Borchers CH. Use of a combination of lsotopically coded cross-linkers and lsotopically coded N-terminal modification reagents for selective identification of inter-peptide crosslinks Analytical Chemistry. 82: 817-823. PMID 20050626 DOI: 10.1021/ac901637v  0.179
2013 Percy AJ, Parker CE, Borchers CH. Pre-analytical and analytical variability in absolute quantitative MRM-based plasma proteomic studies. Bioanalysis. 5: 2837-56. PMID 24256362 DOI: 10.4155/bio.13.245  0.178
2019 Makepeace KAT, Brodie NI, Popov KI, Gudavicius G, Nelson CJ, Petrotchenko EV, Dokholyan NV, Borchers CH. Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations. Journal of Proteomics. 103544. PMID 31683063 DOI: 10.1016/j.jprot.2019.103544  0.177
2015 Percy AJ, Tamura-Wells J, Albar JP, Aloria K, Amirkhani A, Araujo GDT, Arizmendi JM, Blanco FJ, Canals F, Cho JY, Colomé-Calls N, Corrales FJ, Domont G, Espadas G, Fernandez-Puente P, ... ... Borchers CH, et al. Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment Eupa Open Proteomics. 8: 6-15. DOI: 10.1016/J.Euprot.2015.06.001  0.175
2017 Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH. Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations. Science Advances. 3: e1700479. PMID 28695211 DOI: 10.1126/sciadv.1700479  0.174
2012 Caswell CC, Gaines JM, Ciborowski P, Smith D, Borchers CH, Roux CM, Sayood K, Dunman PM, Roop Ii RM. Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Molecular Microbiology. 85: 345-60. PMID 22690807 DOI: 10.1111/J.1365-2958.2012.08117.X  0.174
2013 Le CH, Han J, Borchers CH. Dithranol as a matrix for matrix assisted laser desorption/ionization imaging on a fourier transform ion cyclotron resonance mass spectrometer. Journal of Visualized Experiments : Jove. e50733. PMID 24300588 DOI: 10.3791/50733  0.172
2024 Luo VM, Shen C, Worme S, Bhagrath A, Simo-Cheyou E, Findlay S, Hébert S, Wai Lam Poon W, Aryanpour Z, Zhang T, Zahedi RP, Boulais J, Buchwald ZS, Borchers CH, Côté JF, et al. The Deubiquitylase Otub1 Regulates the Chemotactic Response of Splenic B Cells by Modulating the Stability of the γ-Subunit Gng2. Molecular and Cellular Biology. 44: 1-16. PMID 38270191 DOI: 10.1080/10985549.2023.2290434  0.172
2012 Domanski D, Cohen Freue GV, Sojo L, Kuzyk MA, Ratkay L, Parker CE, Goldberg YP, Borchers CH. The use of multiplexed MRM for the discovery of biomarkers to differentiate iron-deficiency anemia from anemia of inflammation. Journal of Proteomics. 75: 3514-28. PMID 22146476 DOI: 10.1016/j.jprot.2011.11.022  0.172
2019 Martínez de Paz A, Khajavi L, Martin H, Claveria-Gimeno R, Tom Dieck S, Cheema MS, Sanchez-Mut JV, Moksa MM, Carles A, Brodie NI, Sheikh TI, Freeman ME, Petrotchenko EV, Borchers CH, Schuman EM, et al. MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2. Epigenetics & Chromatin. 12: 63. PMID 31601272 DOI: 10.1186/S13072-019-0298-1  0.171
2016 Ellard K, Serpa JJ, Petrotchenko EV, Borchers CH, Ausió J. Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones Biochemistry and Biophysics Reports. 6: 165-171. DOI: 10.1016/j.bbrep.2016.04.002  0.171
2016 Ellard K, Serpa JJ, Petrotchenko EV, Borchers CH, Ausió J. Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones. Biochemistry and Biophysics Reports. 6: 165-171. PMID 28955874 DOI: 10.1016/J.Bbrep.2016.04.002  0.171
2017 Li H, Popp R, Borchers CH. Affinity-mass spectrometric technologies for quantitative proteomics in biological fluids Trac Trends in Analytical Chemistry. 90: 80-88. DOI: 10.1016/J.TRAC.2017.02.011  0.17
2022 Jennings MJ, Kagiava A, Vendredy L, Spaulding EL, Stavrou M, Hathazi D, Grüneboom A, De Winter V, Gess B, Schara U, Pogoryelova O, Lochmüller H, Borchers CH, Roos A, Burgess RW, et al. NCAM1 and GDF15 are biomarkers of Charcot-Marie-Tooth disease in patients and mice. Brain : a Journal of Neurology. PMID 35148379 DOI: 10.1093/brain/awac055  0.169
2012 Pan J, Han J, Borchers CH, Konermann L. Structure and dynamics of small soluble Aβ(1-40) oligomers studied by top-down hydrogen exchange mass spectrometry. Biochemistry. 51: 3694-703. PMID 22486153 DOI: 10.1021/Bi3002049  0.169
2010 Parker CE, Pearson TW, Anderson NL, Borchers CH. Mass-spectrometry-based clinical proteomics--a review and prospective. The Analyst. 135: 1830-8. PMID 20520858 DOI: 10.1039/C0An00105H  0.168
2019 Sobsey CA, Ibrahim S, Richard VR, Gaspar V, Mitsa G, Lacasse V, Zahedi RP, Batist G, Borchers CH. Targeted and Untargeted Proteomics Approaches in Biomarker Development. Proteomics. e1900029. PMID 31729135 DOI: 10.1002/Pmic.201900029  0.167
2018 Luehr TC, Koide EM, Wang X, Han J, Borchers CH, Helbing CC. Metabolomic insights into the effects of thyroid hormone on Rana [Lithobates] catesbeiana metamorphosis using whole-body Matrix Assisted Laser Desorption/Ionization-Mass Spectrometry Imaging (MALDI-MSI). General and Comparative Endocrinology. PMID 29470956 DOI: 10.1016/j.ygcen.2018.02.012  0.167
2017 Dilworth D, Upadhyay SK, Bonnafous P, Edoo AB, Bourbigot S, Pesek-Jardim F, Gudavicius G, Serpa JJ, Petrotchenko EV, Borchers CH, Nelson CJ, Mackereth CD. The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module. Nucleic Acids Research. PMID 29036638 DOI: 10.1093/Nar/Gkx852  0.167
2019 Popov KI, Makepeace KAT, Petrotchenko EV, Dokholyan NV, Borchers CH. Insight into the Structure of the "Unstructured" Tau Protein. Structure (London, England : 1993). PMID 31628033 DOI: 10.1016/j.str.2019.09.003  0.166
2015 Pan J, Zhang S, Chou A, Hardie DB, Borchers CH. Fast Comparative Structural Characterization of Intact Therapeutic Antibodies Using Hydrogen-Deuterium Exchange and Electron Transfer Dissociation. Analytical Chemistry. 87: 5884-90. PMID 25927482 DOI: 10.1021/ac504809r  0.165
2016 Pan J, Zhang S, Chou A, Borchers CH. Higher-order structural interrogation of antibodies using middle-down hydrogen/deuterium exchange mass spectrometry. Chemical Science. 7: 1480-1486. PMID 29910905 DOI: 10.1039/c5sc03420e  0.165
2015 Brodie NI, Makepeace KA, Petrotchenko EV, Borchers CH. Isotopically-coded short-range hetero-bifunctional photo-reactive crosslinkers for studying protein structure. Journal of Proteomics. 118: 12-20. PMID 25192908 DOI: 10.1016/j.jprot.2014.08.012  0.165
2007 Thelin WR, Chen Y, Gentzsch M, Kreda SM, Sallee JL, Scarlett CO, Borchers CH, Jacobson K, Stutts MJ, Milgram SL. Direct interaction with filamins modulates the stability and plasma membrane expression of CFTR. The Journal of Clinical Investigation. 117: 364-74. PMID 17235394 DOI: 10.1172/Jci30376  0.164
2013 Da Costa LA, García-Bailo B, Borchers CH, Badawi A, El-Sohemy A. Association between the plasma proteome and serum ascorbic acid concentrations in humans. The Journal of Nutritional Biochemistry. 24: 842-7. PMID 22841398 DOI: 10.1016/J.Jnutbio.2012.05.002  0.164
2020 Eshghi A, Pistawka AJ, Liu J, Chen M, Sinclair NJT, Hardie DB, Elliott M, Chen L, Newman R, Mohammed Y, Borchers CH. Correction: Concentration Determination of >200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation. Molecular & Cellular Proteomics : McP. 19: 1738. PMID 33451590 DOI: 10.1074/mcp.AAC120.002331  0.163
2020 Eshghi A, Pistawka AJ, Liu J, Chen M, Sinclair NJT, Hardie DB, Elliott M, Chen L, Newman R, Mohammed Y, Borchers CH. Correction: Concentration Determination of >200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation. Molecular & Cellular Proteomics : McP. 19: 1738. PMID 33004661 DOI: 10.1074/mcp.AAC120.002331  0.163
2012 Clarke KJ, Adams AE, Manzke LH, Pearson TW, Borchers CH, Porter RK. A role for ubiquitinylation and the cytosolic proteasome in turnover of mitochondrial uncoupling protein 1 (UCP1). Biochimica Et Biophysica Acta. 1817: 1759-67. PMID 22531154 DOI: 10.1016/J.Bbabio.2012.03.035  0.163
2023 Mohammed Y, Goodlett D, Borchers CH. Bioinformatics Tools and Knowledgebases to Assist Generating Targeted Assays for Plasma Proteomics. Methods in Molecular Biology (Clifton, N.J.). 2628: 557-577. PMID 36781806 DOI: 10.1007/978-1-0716-2978-9_32  0.163
2012 Domanski D, Percy AJ, Yang J, Chambers AG, Hill JS, Freue GV, Borchers CH. MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma. Proteomics. 12: 1222-43. PMID 22577024 DOI: 10.1002/pmic.201100568  0.163
2016 Han J, Lin K, Sequria C, Yang J, Borchers CH. Quantitation of low molecular weight sugars by chemical derivatization-liquid chromatography/multiple-reaction monitoring/mass spectrometry. Electrophoresis. PMID 27120558 DOI: 10.1002/elps.201600150  0.16
2021 Li FKK, Gale RT, Petrotchenko EV, Borchers CH, Brown ED, Strynadka NCJ. Crystallographic analysis of TarI and TarJ, a cytidylyltransferase and reductase pair for CDP-ribitol synthesis in Staphylococcus aureus wall teichoic acid biogenesis. Journal of Structural Biology. 107733. PMID 33819634 DOI: 10.1016/j.jsb.2021.107733  0.159
2016 Han J, Yi Y, Lin K, Birks SJ, Gibson JJ, Borchers CH. Molecular profiling of naphthenic acids in technical mixtures and oil sands process-affected water using polar reversed-phase liquid chromatography-mass spectrometry. Electrophoresis. PMID 27667503 DOI: 10.1002/elps.201600250  0.159
2004 Borchers CH, Marquez VE, Schroeder GK, Short SA, Snider MJ, Speir JP, Wolfenden R. Fourier transform ion cyclotron resonance MS reveals the presence of a water molecule in an enzyme transition-state analogue complex. Proceedings of the National Academy of Sciences of the United States of America. 101: 15341-5. PMID 15494437 DOI: 10.1073/Pnas.0406781101  0.157
2013 García-Bailo B, Jamnik J, Da Costa LA, Borchers CH, Badawi A, El-Sohemy A. Plasma 25-hydroxyvitamin D, hormonal contraceptive use, and the plasma proteome in Caucasian, East Asian, and South Asian young adults. Journal of Proteome Research. 12: 1797-807. PMID 23427916 DOI: 10.1021/Pr4001042  0.157
2010 Reid JD, Holmes DT, Mason DR, Shah B, Borchers CH. Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension. Journal of the American Society For Mass Spectrometry. 21: 1680-6. PMID 20199871 DOI: 10.1016/j.jasms.2010.01.024  0.156
2015 Plaschka C, Larivière L, Wenzeck L, Seizl M, Hemann M, Tegunov D, Petrotchenko EV, Borchers CH, Baumeister W, Herzog F, Villa E, Cramer P. Architecture of the RNA polymerase II-Mediator core initiation complex. Nature. 518: 376-80. PMID 25652824 DOI: 10.1038/Nature14229  0.155
2009 Lippert DN, Ralph SG, Phillips M, White R, Smith D, Hardie D, Gershenzon J, Ritland K, Borchers CH, Bohlmann J. Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response. Proteomics. 9: 350-67. PMID 19105170 DOI: 10.1002/Pmic.200800252  0.154
2012 Le CH, Han J, Borchers CH. Dithranol as a MALDI matrix for tissue imaging of lipids by Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 84: 8391-8. PMID 22931516 DOI: 10.1021/ac301901s  0.152
2012 Thambirajah AA, Ng MK, Frehlick LJ, Li A, Serpa JJ, Petrotchenko EV, Silva-Moreno B, Missiaen KK, Borchers CH, Adam Hall J, Mackie R, Lutz F, Gowen BE, Hendzel M, Georgel PT, et al. MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain. Nucleic Acids Research. 40: 2884-97. PMID 22144686 DOI: 10.1093/nar/gkr1066  0.151
2009 Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AL, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, et al. Erratum: Corrigendum: Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma Nature Biotechnology. 27: 864-864. DOI: 10.1038/Nbt0909-864B  0.15
2012 Pan J, Han J, Borchers CH. Top-down hydrogen/deuterium exchange and ECD-stitched FTICR-MS for probing structural dynamics of a 29-kDa enzyme International Journal of Mass Spectrometry. 325: 130-138. DOI: 10.1016/j.ijms.2012.06.021  0.15
2019 Bhardwaj M, Gies A, Weigl K, Tikk K, Benner A, Schrotz-King P, Borchers CH, Brenner H. Evaluation and Validation of Plasma Proteins Using Two Different Protein Detection Methods for Early Detection of Colorectal Cancer. Cancers. 11. PMID 31557860 DOI: 10.3390/cancers11101426  0.148
2011 Domanski D, Smith DS, Miller CA, Yang Y, Jackson AM, Cohen Freue G, Hill JS, Parker CE, Borchers CH. High-flow multiplexed MRM-based analysis of proteins in human plasma without depletion or enrichment. Clinics in Laboratory Medicine. 31: 371-84. PMID 21907103 DOI: 10.1016/j.cll.2011.07.005  0.148
2014 Wang X, Han J, Pan J, Borchers CH. Comprehensive imaging of porcine adrenal gland lipids by MALDI-FTMS using quercetin as a matrix. Analytical Chemistry. 86: 638-46. PMID 24341451 DOI: 10.1021/ac404044k  0.147
2019 Anwar MA, Dai DL, Wilson-McManus J, Smith D, Francis GA, Borchers CH, McManus BM, Hill JS, Cohen Freue GV. Multiplexed LC/ESI-MRM-MS-based Assay for Identification of Coronary Artery Disease Biomarkers in Human Plasma. Proteomics. Clinical Applications. e1700111. PMID 30632678 DOI: 10.1002/Prca.201700111  0.147
2015 Solomonson M, Setiaputra D, Makepeace KA, Lameignere E, Petrotchenko EV, Conrady DG, Bergeron JR, Vuckovic M, DiMaio F, Borchers CH, Yip CK, Strynadka NC. Structure of EspB from the ESX-1 type VII secretion system and insights into its export mechanism. Structure (London, England : 1993). 23: 571-83. PMID 25684576 DOI: 10.1016/J.Str.2015.01.002  0.146
2015 Mohammed Y, Percy AJ, Chambers AG, Borchers CH. Qualis-SIS: automated standard curve generation and quality assessment for multiplexed targeted quantitative proteomic experiments with labeled standards. Journal of Proteome Research. 14: 1137-46. PMID 25546269 DOI: 10.1021/pr5010955  0.146
2023 Wakid M, Almeida D, Aouabed Z, Rahimian R, Davoli MA, Yerko V, Leonova-Erko E, Richard V, Zahedi R, Borchers C, Turecki G, Mechawar N. Universal method for the isolation of microvessels from frozen brain tissue: A proof-of-concept multiomic investigation of the neurovasculature. Brain, Behavior, & Immunity - Health. 34: 100684. PMID 37822873 DOI: 10.1016/j.bbih.2023.100684  0.146
2015 Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, et al. Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis. Journal of Proteome Research. 14: 2278-86. PMID 25807371 DOI: 10.1021/acs.jproteome.5b00053  0.146
2002 Dominski Z, Yang XC, Raska CS, Santiago C, Borchers CH, Duronio RJ, Marzluff WF. 3' end processing of Drosophila melanogaster histone pre-mRNAs: requirement for phosphorylated Drosophila stem-loop binding protein and coevolution of the histone pre-mRNA processing system. Molecular and Cellular Biology. 22: 6648-60. PMID 12192062 DOI: 10.1128/Mcb.22.18.6648-6660.2002  0.145
2016 Wang X, Han J, Hardie DB, Yang J, Pan J, Borchers CH. Metabolomic profiling of prostate cancer by matrix assisted laser desorption/ionization-Fourier transform ion cyclotron resonance mass spectrometry imaging using Matrix Coating Assisted by an Electric Field (MCAEF). Biochimica Et Biophysica Acta. PMID 28017863 DOI: 10.1016/j.bbapap.2016.12.012  0.145
2020 Gaspar VP, Ibrahim S, Sobsey CA, Richard VR, Spatz A, Zahedi RP, Borchers CH. Direct and Precise Measurement of Bevacizumab Levels in Human Plasma Based on Controlled Methionine Oxidation and Multiple Reaction Monitoring. Acs Pharmacology & Translational Science. 3: 1304-1309. PMID 33344903 DOI: 10.1021/acsptsci.0c00134  0.144
2017 Streijger F, Skinnider M, Rogalski JC, Balshaw R, Shannon CP, Prudova A, Belanger LM, Ritchie L, Tsang A, Christie S, Parent S, Mac-Thiong JM, Bailey C, Urquhart J, Ailon T, ... ... Borchers CH, et al. A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury. Journal of Neurotrauma. PMID 28276985 DOI: 10.1089/Neu.2016.4879  0.143
2020 Shin JJH, Liu P, Chan LJ, Ullah A, Pan J, Borchers CH, Burke JE, Stefan C, Smits GJ, Loewen CJR. pH Biosensing by PI4P Regulates Cargo Sorting at the TGN. Developmental Cell. PMID 31928972 DOI: 10.1016/j.devcel.2019.12.010  0.142
1999 Borchers C, Tomer KB. Characterization of the noncovalent complex of human immunodeficiency virus glycoprotein 120 with its cellular receptor CD4 by matrix-assisted laser desorption/ionization mass spectrometry Biochemistry. 38: 11734-11740. PMID 10512629 DOI: 10.1021/bi990935w  0.141
2022 Mitsa G, Guo Q, Goncalves C, Preston SEJ, Lacasse V, Aguilar-Mahecha A, Benlimame N, Basik M, Spatz A, Batist G, Miller WH, Del Rincon SV, Zahedi RP, Borchers CH. A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens. International Journal of Molecular Sciences. 23. PMID 35457260 DOI: 10.3390/ijms23084443  0.141
2023 Mitsa G, Richard VR, Majedi Y, Lafleur J, Aguilar-Mahecha A, Basik M, Borchers CH. Evaluation of a 'plug and play' nanoflow liquid chromatography system for MS-based proteomic characterization of clinical FFPE specimens. Expert Review of Proteomics. 1-6. PMID 37309581 DOI: 10.1080/14789450.2023.2219844  0.14
2017 Percy AJ, Michaud SA, Jardim A, Sinclair NJ, Zhang S, Mohammed Y, Palmer AL, Hardie DB, Yang J, LeBlanc AM, Borchers CH. Front Cover: Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue Proteomics. 17: 1770050. DOI: 10.1002/pmic.201770050  0.138
2018 Penn AM, Bibok MB, Saly VK, Coutts SB, Lesperance ML, Balshaw RF, Votova K, Croteau NS, Trivedi A, Jackson AM, Hegedus J, Klourfeld E, Yu AYX, Zerna C, Borchers CH, et al. Verification of a Proteomic Biomarker Panel to Diagnose Minor Stroke and Transient Ischaemic Attack: Phase 1 of SpecTRA, a Large Scale Translational Study. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-48. PMID 29385837 DOI: 10.1080/1354750X.2018.1434681  0.138
2020 Bhardwaj M, Weigl K, Tikk K, Holland-Letz T, Schrotz-King P, Borchers CH, Brenner H. Multiplex quantitation of 270 plasma protein markers to identify a signature for early detection of colorectal cancer. European Journal of Cancer (Oxford, England : 1990). 127: 30-40. PMID 31972396 DOI: 10.1016/j.ejca.2019.11.021  0.137
2006 Tsukada Y, Fang J, Erdjument-Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y. Histone demethylation by a family of JmjC domain-containing proteins. Nature. 439: 811-6. PMID 16362057 DOI: 10.1038/Nature04433  0.137
1996 Boer R, Ulrich WR, Haas S, Borchers C, Gekeler V, Boss H, Przybylski M, Schödl A. Interaction of cytostatics and chemosensitizers with the dexniguldipine binding site on P-glycoprotein European Journal of Pharmacology. 295: 253-260. PMID 8720592 DOI: 10.1016/0014-2999(95)00649-4  0.134
2009 Parker CE, Smith D, Suckau D, Borchers CH. Mass spectrometry-based tissue imaging Advanced Imaging in Biology and Medicine: Technology, Software Environments, Applications. 131-146. DOI: 10.1007/978-3-540-68993-5_6  0.134
2023 Yerra VG, Batchu SN, Kaur H, Kabir MDG, Liu Y, Advani SL, Tran DT, Sadeghian S, Sedrak P, Billia F, Kuzmanov U, Gramolini AO, Qasrawi DO, Petrotchenko EV, Borchers CH, et al. Pressure overload induces ISG15 to facilitate adverse ventricular remodeling and promote heart failure. The Journal of Clinical Investigation. 133. PMID 37115698 DOI: 10.1172/JCI161453  0.134
2016 Yang J, Finke JC, Yang J, Percy AJ, von Fritschen U, Borchers CH, Glocker MO. Early risk prognosis of free-flap transplant failure by quantitation of the macrophage colony-stimulating factor in patient plasma using 2-dimensional liquid-chromatography multiple reaction monitoring-mass spectrometry. Medicine. 95: e4808. PMID 27684807 DOI: 10.1097/MD.0000000000004808  0.133
2017 Guarna MM, Hoover SE, Huxter E, Higo H, Moon KM, Domanski D, Bixby MEF, Melathopoulos AP, Ibrahim A, Peirson M, Desai S, Micholson D, White R, Borchers CH, Currie RW, et al. Peptide biomarkers used for the selective breeding of a complex polygenic trait in honey bees. Scientific Reports. 7: 8381. PMID 28827652 DOI: 10.1038/S41598-017-08464-2  0.131
2014 Serpa JJ, Makepeace KA, Borchers TH, Wishart DS, Petrotchenko EV, Borchers CH. Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates. Journal of Proteomics. 100: 160-6. PMID 24316355 DOI: 10.1016/j.jprot.2013.11.020  0.13
2018 Penn AM, Bibok MB, Saly VK, Coutts SB, Lesperance ML, Balshaw RF, Votova K, Croteau NS, Trivedi A, Jackson AM, Hegedus J, Klourfeld E, Yu AYX, Zerna C, Modi J, ... ... Borchers CH, et al. Validation of a Proteomic Biomarker Panel to Diagnose Minor-Stroke and Transient Ischaemic Attack: Phase 2 of SpecTRA, a Large Scale Translational Study. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-45. PMID 30010432 DOI: 10.1080/1354750X.2018.1499130  0.13
2020 Kashirina DN, Brzhozovskiy AG, Pastushkova LK, Kononikhin AS, Borchers CH, Nikolaev EN, Larina IM. Semiquantitative Proteomic Research of Protein Plasma Profile of Volunteers in 21-Day Head-Down Bed Rest. Frontiers in Physiology. 11: 678. PMID 32848806 DOI: 10.3389/fphys.2020.00678  0.13
2020 Kashirina DN, Brzhozovskiy AG, Pastushkova LK, Kononikhin AS, Borchers CH, Nikolaev EN, Larina IM. Semiquantitative Proteomic Research of Protein Plasma Profile of Volunteers in 21-Day Head-Down Bed Rest Frontiers in Physiology. 11. DOI: 10.3389/fphys.2020.00678  0.13
2022 Richard VR, Gaither C, Popp R, Chaplygina D, Brzhozovskiy A, Kononikhin A, Mohammed Y, Zahedi RP, Nikolaev EN, Borchers CH. Early prediction of COVID-19 patient survival by targeted plasma multi-omics and machine learning. Molecular & Cellular Proteomics : McP. 100277. PMID 35931319 DOI: 10.1016/j.mcpro.2022.100277  0.129
2013 Wang X, Han J, Chou A, Yang J, Pan J, Borchers CH. Hydroxyflavones as a new family of matrices for MALDI tissue imaging. Analytical Chemistry. 85: 7566-73. PMID 23895229 DOI: 10.1021/ac401595a  0.127
2012 García-Bailo B, Brenner DR, Nielsen D, Lee HJ, Domanski D, Kuzyk M, Borchers CH, Badawi A, Karmali MA, El-Sohemy A. Dietary patterns and ethnicity are associated with distinct plasma proteomic groups. The American Journal of Clinical Nutrition. 95: 352-61. PMID 22205312 DOI: 10.3945/Ajcn.111.022657  0.125
2016 Pan J, Zhang S, Chou A, Borchers CH. Higher-order structural interrogation of antibodies using middle-down hydrogen/deuterium exchange mass spectrometry Chemical Science. 7: 1480-1486. DOI: 10.1039/c5sc03420e  0.122
2019 Kashirina DN, Percy AJ, Pastushkova LK, Borchers CH, Kireev KS, Ivanisenko VA, Kononikhin AS, Nikolaev EN, Larina IM. The molecular mechanisms driving physiological changes after long duration space flights revealed by quantitative analysis of human blood proteins. Bmc Medical Genomics. 12: 45. PMID 30871558 DOI: 10.1186/s12920-019-0490-y  0.122
2012 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. 12: 11-20. PMID 22069307 DOI: 10.1002/Pmic.201100562  0.122
2011 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. Clinical Applications. 5: 580-9. PMID 22213554 DOI: 10.1002/prca.201100097  0.122
2012 Antunes LC, Wang M, Andersen SK, Ferreira RB, Kappelhoff R, Han J, Borchers CH, Finlay BB. Repression of Salmonella enterica phoP expression by small molecules from physiological bile. Journal of Bacteriology. 194: 2286-96. PMID 22366421 DOI: 10.1128/JB.00104-12  0.122
2012 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles). Journal of Proteome Research. 11: 1412-9. PMID 22053864 DOI: 10.1021/Pr201071T  0.122
2024 Sobsey CA, Mady N, Richard VR, LeBlanc A, Zakharov T, Borchers CH, Jagoe RT. Measurement of CYP1A2 and CYP3A4 activity by a simplified Geneva cocktail approach in a cohort of free-living individuals: a pilot study. Frontiers in Pharmacology. 15: 1232595. PMID 38370474 DOI: 10.3389/fphar.2024.1232595  0.122
2011 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles). Molecular & Cellular Proteomics : McP. 10: O111.015446. PMID 22052993 DOI: 10.1074/Mcp.O111.015446  0.121
2019 Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH. Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations. Plos Computational Biology. 15: e1006859. PMID 30917118 DOI: 10.1371/journal.pcbi.1006859  0.12
2015 Han J, Parker CE, Borchers CH. Foreword Advanced Lc-Ms Applications in Metabolomics. 2-4. DOI: 10.4155/9781910419441.14.234  0.12
2024 Qasrawi DO, Al-Ghabkari A, Khan RM, Petrotchenko EV, Montero-Odasso M, Borchers CH. A Simplified Proteomics LC-MRM-MS Assay for Determination of apoE Genotypes in Plasma Samples. Journal of Proteome Research. PMID 38412507 DOI: 10.1021/acs.jproteome.3c00557  0.12
2010 Han J, Antunes LCM, Finlay BB, Borchers CH. Metabolomics: Towards understanding host-microbe interactions Future Microbiology. 5: 153-161. PMID 20143941 DOI: 10.2217/fmb.09.132  0.119
2021 Serpa JJ, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH. Structure of prion β-oligomers as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations. Proteomics. e2000298. PMID 34482645 DOI: 10.1002/pmic.202000298  0.119
2013 Larivière L, Plaschka C, Seizl M, Petrotchenko EV, Wenzeck L, Borchers CH, Cramer P. Model of the Mediator middle module based on protein cross-linking. Nucleic Acids Research. 41: 9266-73. PMID 23939621 DOI: 10.1093/nar/gkt704  0.117
2007 Heesen C, Reich C, Borchers C, Gold SM, Schulz KH. Patient based scoring instruments in multiple sclerosis - German validation of the United Kingdom Disability Scale and the Patient Generated Index Neurologie Und Rehabilitation. 13: 24-36.  0.117
2018 Mahdavi S, Jenkins DJA, Borchers CH, El-Sohemy A. Genetic Variation in 9p21 and the Plasma Proteome. Journal of Proteome Research. PMID 29905076 DOI: 10.1021/Acs.Jproteome.8B00117  0.117
2014 Ichu TA, Han J, Borchers CH, Lesperance M, Helbing CC. Metabolomic insights into system-wide coordination of vertebrate metamorphosis. Bmc Developmental Biology. 14: 5. PMID 24495308 DOI: 10.1186/1471-213X-14-5  0.115
2022 Preston SEJ, Bartish M, Richard VR, Aghigh A, Gonçalves C, Smith-Voudouris J, Huang F, Thebault P, Cleret-Buhot A, Lapointe R, Légaré F, Postovit LM, Zahedi RP, Borchers CH, Miller WH, et al. Phosphorylation of eIF4E in the stroma drives the production and spatial organisation of collagen type I in the mammary gland. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 35842012 DOI: 10.1016/j.matbio.2022.07.003  0.114
2013 Da Costa LA, García-Bailo B, Borchers CH, Badawi A, El-Sohemy A. Association between the plasma proteome and plasma α-tocopherol concentrations in humans. The Journal of Nutritional Biochemistry. 24: 396-400. PMID 23199695 DOI: 10.1016/J.Jnutbio.2012.08.012  0.113
2013 Antunes LC, Han J, Pan J, Moreira CJ, Azambuja P, Borchers CH, Carels N. Metabolic signatures of triatomine vectors of Trypanosoma cruzi unveiled by metabolomics. Plos One. 8: e77283. PMID 24204787 DOI: 10.1371/journal.pone.0077283  0.113
2014 Mattos KA, Oliveira VC, Berrêdo-Pinho M, Amaral JJ, Antunes LC, Melo RC, Acosta CC, Moura DF, Olmo R, Han J, Rosa PS, Almeida PE, Finlay BB, Borchers CH, Sarno EN, et al. Mycobacterium leprae intracellular survival relies on cholesterol accumulation in infected macrophages: a potential target for new drugs for leprosy treatment. Cellular Microbiology. 16: 797-815. PMID 24552180 DOI: 10.1111/cmi.12279  0.11
2017 Borchers CH, Thibault P. Corrigendum to "Introduction to the HUPO 2015 Special Issue" [J. Proteomics (2016) 1-2]. Journal of Proteomics. 152: 355-356. PMID 28062015 DOI: 10.1016/J.Jprot.2016.12.005  0.109
2015 Geisler C, Gaisa NT, Pfister D, Fuessel S, Kristiansen G, Braunschweig T, Gostek S, Beine B, Diehl HC, Jackson AM, Borchers CH, Heidenreich A, Meyer HE, Knüchel R, Henkel C. Identification and validation of potential new biomarkers for prostate cancer diagnosis and prognosis using 2D-DIGE and MS. Biomed Research International. 2015: 454256. PMID 25667921 DOI: 10.1155/2015/454256  0.109
2014 Borchers CH, Kast J, Foster LJ, Siu KW, Overall CM, Binkowski TA, Hildebrand WH, Scherer A, Mansoor M, Keown PA. The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies. Journal of Proteomics. 100: 60-7. PMID 23933161 DOI: 10.1016/J.Jprot.2013.08.001  0.108
2020 Richard VR, Zahedi RP, Eintracht S, Borchers CH. An LC-MRM assay for the quantification of metanephrines from dried blood spots for the diagnosis of pheochromocytomas and paragangliomas Analytica Chimica Acta. 1128: 140-148. DOI: 10.1016/j.aca.2020.06.020  0.107
2017 Peixoto RJM, Alves ES, Wang M, Ferreira RBR, Granato A, Han J, Gill H, Jacobson K, Lobo LA, Domingues RMCP, Borchers CH, Davies JE, Finlay BB, Antunes LCM. Repression of Salmonella host cell invasion by aromatic small molecules from the human fecal metabolome. Applied and Environmental Microbiology. PMID 28754707 DOI: 10.1128/Aem.01148-17  0.107
2021 Skinnider MA, Rogalski J, Tigchelaar S, Manouchehri N, Prudova A, Jackson AM, Nielsen K, Jeong J, Chaudhary S, Shortt K, Gallagher-Kurtzke Y, So K, Fong A, Gupta R, Okon EB, ... ... Borchers C, et al. Proteomic portraits reveal evolutionarily conserved and divergent responses to spinal cord injury. Molecular & Cellular Proteomics : McP. 100096. PMID 34129941 DOI: 10.1016/j.mcpro.2021.100096  0.106
2003 Xiao T, Hall H, Kizer KO, Shibata Y, Hall MC, Borchers CH, Strahl BD. Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes & Development. 17: 654-63. PMID 12629047 DOI: 10.1101/Gad.1055503  0.106
2014 Yassine HN, Jackson AM, Reaven PD, Nedelkov D, Nelson RW, Lau SS, Borchers CH. The Application of Multiple Reaction Monitoring to Assess Apo A-I Methionine Oxidations in Diabetes and Cardiovascular Disease. Translational Proteomics. 4: 18-24. PMID 25705587 DOI: 10.1016/J.Trprot.2014.10.001  0.105
2011 Hall DE, Robert JA, Keeling CI, Domanski D, Quesada AL, Jancsik S, Kuzyk MA, Hamberger B, Borchers CH, Bohlmann J. An integrated genomic, proteomic and biochemical analysis of (+)-3-carene biosynthesis in Sitka spruce (Picea sitchensis) genotypes that are resistant or susceptible to white pine weevil. The Plant Journal : For Cell and Molecular Biology. 65: 936-48. PMID 21323772 DOI: 10.1111/J.1365-313X.2010.04478.X  0.104
1994 Findlay JK, Russell DL, Doughton B, Tsonis CG, Borchers C, Forage RG. Effect of active immunization against the amino-terminal peptide (An) of the alpha 43 kda subunit of inhibin (α43) on fertility of ewes Reproduction, Fertility and Development. 6: 265-267. PMID 7991798 DOI: 10.1071/RD9940265  0.103
2020 De Giorgi M, Jarrett KE, Burton JC, Doerfler AM, Hurley A, Li A, Hsu RH, Furgurson M, Patel KR, Han J, Borchers CH, Lagor WR. Depletion of essential isoprenoids and ER stress induction following acute liver-specific deletion of HMG-CoA reductase. Journal of Lipid Research. 61: 1675-1686. PMID 33455711 DOI: 10.1194/jlr.RA120001006  0.102
2020 De Giorgi M, Jarrett KE, Burton JC, Doerfler AM, Hurley A, Li A, Hsu RH, Furgurson M, Patel KR, Han J, Borchers CH, Lagor WR. Depletion of essential isoprenoids and ER stress induction following acute liver-specific deletion of HMG-CoA Reductase. Journal of Lipid Research. PMID 33109681 DOI: 10.1194/jlr.RA120001006  0.102
2023 Reboucas P, Fillebeen C, Botta A, Cleverdon R, Steele AP, Richard V, Zahedi RP, Borchers CH, Burelle Y, Hawke TJ, Pantopoulos K, Sweeney G. Discovery-Based Proteomics Identify Skeletal Muscle Mitochondrial Alterations as an Early Metabolic Defect in a Mouse Model of β-Thalassemia. International Journal of Molecular Sciences. 24. PMID 36901833 DOI: 10.3390/ijms24054402  0.102
2023 Wang K, Khoramjoo M, Srinivasan K, Gordon PMK, Mandal R, Jackson D, Sligl W, Grant MB, Penninger JM, Borchers CH, Wishart DS, Prasad V, Oudit GY. Sequential multi-omics analysis identifies clinical phenotypes and predictive biomarkers for long COVID. Cell Reports. Medicine. 101254. PMID 37890487 DOI: 10.1016/j.xcrm.2023.101254  0.1
2019 Larina IM, Percy AJ, Yang J, Borchers CH, Nosovsky AM, Grigoriev AI, Nikolaev EN. Publisher Correction: Protein expression changes caused by spaceflight as measured for 18 Russian cosmonauts. Scientific Reports. 9: 8570. PMID 31171809 DOI: 10.1038/s41598-019-43121-w  0.1
2013 Headley JV, Peru KM, Mohamed MH, Frank RA, Martin JW, Hazewinkel RR, Humphries D, Gurprasad NP, Hewitt LM, Muir DC, Lindeman D, Strub R, Young RF, Grewer DM, Whittal RM, ... ... Borchers CH, et al. Chemical fingerprinting of naphthenic acids and oil sands process waters-A review of analytical methods for environmental samples. Journal of Environmental Science and Health. Part a, Toxic/Hazardous Substances & Environmental Engineering. 48: 1145-63. PMID 23647107 DOI: 10.1080/10934529.2013.776332  0.1
2011 Arena ET, Auweter SD, Antunes LC, Vogl AW, Han J, Guttman JA, Croxen MA, Menendez A, Covey SD, Borchers CH, Finlay BB. The deubiquitinase activity of the Salmonella pathogenicity island 2 effector, SseL, prevents accumulation of cellular lipid droplets. Infection and Immunity. 79: 4392-400. PMID 21875964 DOI: 10.1128/Iai.05478-11  0.099
2016 Qiu YL, Gong JY, Feng JY, Wang RX, Han J, Liu T, Lu Y, Li LT, Zhang MH, Sheps JA, Wang NL, Yan YY, Li JQ, Chen L, Borchers CH, et al. Defects in MYO5B are associated with a spectrum of previously undiagnosed low γ-glutamyltransferase cholestasis. Hepatology (Baltimore, Md.). PMID 28027573 DOI: 10.1002/hep.29020  0.097
2022 Silverstein A, Dudaev A, Studneva M, Aitken J, Blokh S, Miller AD, Tanasova S, Rose N, Ryals J, Borchers C, Nordstrom A, Moiseyakh M, Herrera AS, Skomorohov N, Marshall T, et al. Evolution of biomarker research in autoimmunity conditions for health professionals and clinical practice. Progress in Molecular Biology and Translational Science. 190: 219-276. PMID 36008000 DOI: 10.1016/bs.pmbts.2022.02.004  0.095
2015 Jamnik J, García-Bailo B, Borchers CH, El-Sohemy A. Gluten Intake Is Positively Associated with Plasma α2-Macroglobulin in Young Adults. The Journal of Nutrition. 145: 1256-62. PMID 25855121 DOI: 10.3945/Jn.115.212829  0.094
2012 Singh A, Cohen Freue GV, Oosthuizen JL, Kam SH, Ruan J, Takhar MK, Gauvreau GM, O'Byrne PM, Fitzgerald JM, Boulet LP, Borchers CH, Tebbutt SJ. Plasma proteomics can discriminate isolated early from dual responses in asthmatic individuals undergoing an allergen inhalation challenge. Proteomics. Clinical Applications. 6: 476-85. PMID 22930592 DOI: 10.1002/prca.201200013  0.093
2011 Antunes LC, Han J, Ferreira RB, Lolić P, Borchers CH, Finlay BB. Effect of antibiotic treatment on the intestinal metabolome. Antimicrobial Agents and Chemotherapy. 55: 1494-503. PMID 21282433 DOI: 10.1128/AAC.01664-10  0.092
2013 Amaral JJ, Antunes LC, de Macedo CS, Mattos KA, Han J, Pan J, Candéa AL, Henriques Md, Ribeiro-Alves M, Borchers CH, Sarno EN, Bozza PT, Finlay BB, Pessolani MC. Metabonomics reveals drastic changes in anti-inflammatory/pro-resolving polyunsaturated fatty acids-derived lipid mediators in leprosy disease. Plos Neglected Tropical Diseases. 7: e2381. PMID 23967366 DOI: 10.1371/journal.pntd.0002381  0.092
2021 Mohammed Y, Touw CE, Nemeth B, van Adrichem RA, Borchers CH, Rosendaal FR, van Vlijmen BJ, Cannegieter SC. Targeted proteomics for evaluating risk of venous thrombosis following traumatic lower-leg injury or knee arthroscopy. Journal of Thrombosis and Haemostasis : Jth. PMID 34919779 DOI: 10.1111/jth.15623  0.088
2007 McMorran BJ, Patat SAO, Carlin JB, Grimwood K, Jones A, Armstrong DS, Galati JC, Cooper PJ, Byrnes CA, Francis PW, Robertson CF, Hume DA, Borchers CH, Wainwright CE, Wainwright BJ. Novel neutrophil-derived proteins in bronchoalveolar lavage fluid indicate an exaggerated inflammatory response in pediatric cystic fibrosis patients Clinical Chemistry. 53: 1782-1791. PMID 17702859 DOI: 10.1373/Clinchem.2007.087650  0.086
2021 Gaspar VP, Ibrahim S, Zahedi RP, Borchers CH. Utility, promise, and limitations of liquid chromatography-mass spectrometry-based therapeutic drug monitoring in precision medicine. Journal of Mass Spectrometry : Jms. 56: e4788. PMID 34738286 DOI: 10.1002/jms.4788  0.085
2013 Behringer V, Borchers C, Deschner T, Möstl E, Selzer D, Hohmann G. Measurements of Salivary Alpha Amylase and Salivary Cortisol in Hominoid Primates Reveal Within-Species Consistency and Between-Species Differences Plos One. 8. PMID 23613746 DOI: 10.1371/Journal.Pone.0060773  0.084
2012 Eckle T, Hartmann K, Bonney S, Reithel S, Mittelbronn M, Walker LA, Lowes BD, Han J, Borchers CH, Buttrick PM, Kominsky DJ, Colgan SP, Eltzschig HK. Adora2b-elicited Per2 stabilization promotes a HIF-dependent metabolic switch crucial for myocardial adaptation to ischemia. Nature Medicine. 18: 774-82. PMID 22504483 DOI: 10.1038/Nm.2728  0.084
2016 Bround MJ, Wambolt R, Cen H, Asghari P, Albu RF, Han J, McAfee D, Pourrier M, Scott NE, Bohunek L, Kulpa JE, Chen SW, Fedida D, Brownsey RW, Borchers CH, et al. Ryr2-Mediated Calcium Signals Specifically Promote Glucose Oxidation via Pyruvate Dehydrogenase. The Journal of Biological Chemistry. PMID 27621312 DOI: 10.1074/Jbc.M116.756973  0.084
2019 Sirois I, Aguilar-Mahecha A, Lafleur J, Fowler E, Vu V, Scriver M, Buchanan M, Chabot C, Ramanathan A, Balachandran B, Legare S, Przybytkowski E, Lan C, Krzemien U, Cavallone L, ... ... Borchers CH, et al. A unique morphological phenotype in chemoresistant triple negative breast cancer reveals metabolic reprogramming and PLIN4 expression as a molecular vulnerability. Molecular Cancer Research : McR. PMID 31537618 DOI: 10.1158/1541-7786.Mcr-19-0264  0.081
2018 Parker CE, Borchers CH. The Special Issue: Clinical Proteomics for Precision Medicine. Proteomics. Clinical Applications. 12. PMID 29521035 DOI: 10.1002/prca.201600144  0.078
2015 Szabat M, Page MM, Panzhinskiy E, Skovsø S, Mojibian M, Fernandez-Tajes J, Bruin JE, Bround MJ, Lee JT, Xu EE, Taghizadeh F, O'Dwyer S, van de Bunt M, Moon KM, Sinha S, ... ... Borchers CH, et al. Reduced Insulin Production Relieves Endoplasmic Reticulum Stress and Induces β Cell Proliferation. Cell Metabolism. PMID 26626461 DOI: 10.1016/J.Cmet.2015.10.016  0.075
2019 Mao F, Liu T, Hou X, Zhao H, He W, Li C, Jing Z, Sui J, Wang F, Liu X, Han J, Borchers CH, Wang JS, Li W. Increased sulfation of bile acids in mice and human subjects with sodium taurocholate cotransporting polypeptide deficiency. The Journal of Biological Chemistry. PMID 31201272 DOI: 10.1074/jbc.RA118.007179  0.075
2011 Morozova OS, Khomenko TI, Borchers C, Leonov AV. Effect of mechanically induced modification on TiH 2 thermal stability Journal of Alloys and Compounds. 509. DOI: 10.1016/j.jallcom.2011.01.048  0.075
2018 Perzanowska A, Fatalska A, Wojtas G, Lewandowicz A, Michalak A, Krasowski G, Borchers CH, Dadlez M, Domanski D. An MRM-Based Cytokeratin Marker Assay as a Tool for Cancer Studies: Application to Lung-Cancer Pleural Effusions. Proteomics. Clinical Applications. PMID 29352525 DOI: 10.1002/prca.201700084  0.073
2023 Zhang AMY, Xia YH, Lin JSH, Chu KH, Wang WCK, Ruiter TJJ, Yang JCC, Chen N, Chhuor J, Patil S, Cen HH, Rideout EJ, Richard VR, Schaeffer DF, Zahedi RP, ... Borchers CH, et al. Hyperinsulinemia acts via acinar insulin receptors to initiate pancreatic cancer by increasing digestive enzyme production and inflammation. Cell Metabolism. PMID 37913768 DOI: 10.1016/j.cmet.2023.10.003  0.073
2015 Brown EM, Wlodarska M, Willing BP, Vonaesch P, Han J, Reynolds LA, Arrieta MC, Uhrig M, Scholz R, Partida O, Borchers CH, Sansonetti PJ, Finlay BB. Diet and specific microbial exposure trigger features of environmental enteropathy in a novel murine model. Nature Communications. 6: 7806. PMID 26241678 DOI: 10.1038/Ncomms8806  0.073
2017 Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando A, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, et al. Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma. Journal of Lipid Research. PMID 28986437 DOI: 10.1194/Jlr.M079012  0.073
2009 Morozova O, Khomenko T, Leonov A, Borchers C, Kurmaev E, Moewes A. Ti/C and Ti/B nanocomposites: Comparison of sorption-desorption properties Solid State Phenomena. 151: 203-207. DOI: 10.4028/www.scientific.net/SSP.151.203  0.072
2011 Antunes LC, Andersen SK, Menendez A, Arena ET, Han J, Ferreira RB, Borchers CH, Finlay BB. Metabolomics reveals phospholipids as important nutrient sources during Salmonella growth in bile in vitro and in vivo. Journal of Bacteriology. 193: 4719-25. PMID 21764918 DOI: 10.1128/JB.05132-11  0.072
2019 Oyama Y, Bartman CM, Bonney S, Lee JS, Walker LA, Han J, Borchers CH, Buttrick PM, Aherne CM, Clendenen N, Colgan SP, Eckle T. Intense Light-Mediated Circadian Cardioprotection via Transcriptional Reprogramming of the Endothelium. Cell Reports. 28: 1471-1484.e11. PMID 31390562 DOI: 10.1016/j.celrep.2019.07.020  0.07
2017 Urao N, Mirza RE, Corbiere TF, Hollander Z, Borchers CH, Koh TJ. Thrombospondin-1 and disease progression in dysferlinopathy. Human Molecular Genetics. 26: 4951-4960. PMID 29206970 DOI: 10.1093/hmg/ddx378  0.07
2016 Hollander Z, Dai D, Shannon C, Chen V, Lam K, McManus J, Assadian S, Toma M, Tebbutt S, Balshaw R, Borchers C, Davies R, Delgado D, Haddad H, Ignaszewski A, et al. Biomarkers Monitoring for Absence of Acute Allograft Rejection The Journal of Heart and Lung Transplantation. 35: S33. DOI: 10.1016/J.Healun.2016.01.088  0.069
2011 Antunes LC, Arena ET, Menendez A, Han J, Ferreira RB, Buckner MM, Lolic P, Madilao LL, Bohlmann J, Borchers CH, Finlay BB. Impact of salmonella infection on host hormone metabolism revealed by metabolomics. Infection and Immunity. 79: 1759-69. PMID 21321075 DOI: 10.1128/Iai.01373-10  0.067
2023 Shahid I, Han J, Hanook S, Borchers CH, El Enshasy HA, Mehnaz S. Genome mining of spp. hints towards the production of under-pitched secondary metabolites. 3 Biotech. 13: 182. PMID 37193329 DOI: 10.1007/s13205-023-03607-x  0.066
2021 Shahid I, Han J, Hardie D, Baig DN, Malik KA, Borchers CH, Mehnaz S. Profiling of antimicrobial metabolites of plant growth promoting spp. isolated from different plant hosts. 3 Biotech. 11: 48. PMID 33489669 DOI: 10.1007/s13205-020-02585-8  0.066
2015 Borchers C, Stoltenhoff T, Hahn M, Schulze M, Assadi H, Suryanarayana C, Gärtner F, Klassen T. Strain-induced phase transformation of MCrAlY Advanced Engineering Materials. 17: 723-731. DOI: 10.1002/Adem.201400174  0.065
2015 Hagel JM, Mandal R, Han B, Han J, Dinsmore DR, Borchers CH, Wishart DS, Facchini PJ. Metabolome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants. Bmc Plant Biology. 15: 220. PMID 26369413 DOI: 10.1186/S12870-015-0594-2  0.061
2010 Freue CG, Sasaki M, Wilson-McManus J, Tebbutt S, Borchers C, Smith D, Ng RT, Balshaw R, Keown P, McManus B, McMaster R. A PROTEOMIC BIOMARKER PIPELINE FROM DISCOVERY TO THE CLINIC: VALIDATION IN CARDIAC TRANSPLANTATION Transplantation Journal. 90: 758. DOI: 10.1097/00007890-201007272-01465  0.061
2009 Borchers C, Al-Kassab T, Goto S, Kirchheim R. Partially amorphous nanocomposite obtained from heavily deformed pearlitic steel Materials Science and Engineering A. 502: 131-138. DOI: 10.1016/J.Msea.2008.10.018  0.057
2010 Borchers CH, Parker CE. Improving the biomarker pipeline Clinical Chemistry. 56: 1786-1788. PMID 20940327 DOI: 10.1373/clinchem.2010.155705  0.055
2017 Reynolds LA, Redpath SA, Yurist-Doutsch S, Gill N, Brown EM, van der Heijden J, Brosschot TP, Han J, Marshall NC, Woodward SE, Valdez Y, Borchers CH, Perona-Wright G, Finlay BB. Enteric helminths promote Salmonella co-infection by altering the intestinal metabolome. The Journal of Infectious Diseases. PMID 28368463 DOI: 10.1093/infdis/jix141  0.055
1996 Busch R, Gärtner F, Borchers C, Haasen P, Bormann R. High resolution microstructure analysis of the decomposition of Cu90Co10 alloys Acta Materialia. 44: 2567-2579. DOI: 10.1016/1359-6454(95)00370-3  0.055
2018 Wang R, Sheps JA, Liu L, Han J, Chen PSK, Lamontagne J, Wilson PD, Welch ID, Borchers CH, Ling V. Hydrophilic bile acids prevent liver damage caused by lack of biliary phospholipid in mice. Journal of Lipid Research. PMID 30416103 DOI: 10.1194/Jlr.M088070  0.053
2020 Liu T, Wang RX, Han J, Qiu YL, Borchers CH, Ling V, Wang JS. Changes in plasma bile acid profiles after partial internal biliary diversion in PFIC2 patients. Annals of Translational Medicine. 8: 185. PMID 32309332 DOI: 10.21037/atm.2020.01.103  0.052
2010 Borchers C, Chen Y, Deutges M, Goto S, Kirchheim R. Carbon-defect interaction during recovery and recrystallization of heavily deformed pearlitic steel wires Philosophical Magazine Letters. 90: 581-588. DOI: 10.1080/09500839.2010.484400  0.052
2018 Liu T, Wang RX, Han J, Hao CZ, Qiu YL, Yan YY, Li LT, Wang NL, Gong JY, Lu Y, Zhang MH, Xie XB, Yang JC, You YJ, Li JQ, ... ... Borchers CH, et al. Comprehensive bile acid profiling in hereditary intrahepatic cholestasis: Genetic and clinical correlations. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 29412511 DOI: 10.1111/liv.13714  0.052
2005 Borchers C, Leonov AV, Khomenko TI, Morozova OS. Stimulating effect of graphite admixture on hydrogen sorption-desorption properties of mechanically activated titanium powder. The Journal of Physical Chemistry. B. 109: 10341-7. PMID 16852253 DOI: 10.1021/jp0406870  0.051
2005 Borchers C, Bormann R. Determination of low-temperature interfacial energies from a pair interaction model Acta Materialia. 53: 3695-3701. DOI: 10.1016/j.actamat.2005.04.022  0.05
2000 Borchers C, Laudahn U, Pundt A, Fähler S, Krebs HU, Kirchheim R. Influence of hydrogen loading on the microstructure of niobium-palladium multilayers Philosophical Magazine a: Physics of Condensed Matter, Structure, Defects and Mechanical Properties. 80: 543-553.  0.049
2007 Goto S, Kirchheim R, Al-Kassab T, Borchers C. Application of cold drawn lamellar microstructure for developing ultra-high strength wires Transactions of Nonferrous Metals Society of China (English Edition). 17: 1129-1138. DOI: 10.1016/S1003-6326(07)60238-6  0.049
2001 Borchers C, Stoltenhoff T, Gärtner F, Kreye H, Assadi H. Deformation microstructure of cold gas sprayed coatings Materials Research Society Symposium - Proceedings. 673.  0.048
2005 Borchers C, Gärtner F, Stoltenhoff T, Kreye H. Formation of persistent dislocation loops by ultra-high strain-rate deformation during cold spraying Acta Materialia. 53: 2991-3000. DOI: 10.1016/j.actamat.2005.02.048  0.048
2006 Stichtenoth D, Schwen D, Müller S, Borchers C, Ronning C. Optical activation of implanted impurities in ZnS nanowires Journal of Vacuum Science and Technology a: Vacuum, Surfaces and Films. 24: 1356-1359. DOI: 10.1116/1.2167078  0.047
2011 Kliemann JO, Gutzmann H, Gärtner F, Hübner H, Borchers C, Klassen T. Formation of cold-sprayed ceramic titanium dioxide layers on metal surfaces Journal of Thermal Spray Technology. 20: 292-298. DOI: 10.1007/s11666-010-9563-3  0.046
2015 Brown EM, Wlodarska M, Willing BP, Vonaesch P, Han J, Reynolds LA, Arrieta MC, Uhrig M, Scholz R, Partida O, Borchers CH, Sansonetti PJ, Finlay BB. Diet and specific microbial exposure trigger features of environmental enteropathy in a novel murine model Nature Communications. 6. DOI: 10.1038/ncomms8806  0.046
2016 Borchers C, Kirchheim R. Cold-drawn pearlitic steel wires Progress in Materials Science. 82: 405-444. DOI: 10.1016/J.Pmatsci.2016.06.001  0.044
2011 Li YJ, Choi P, Borchers C, Westerkamp S, Goto S, Raabe D, Kirchheim R. Atomic-scale mechanisms of deformation-induced cementite decomposition in pearlite Acta Materialia. 59: 3965-3977. DOI: 10.1016/J.Actamat.2011.03.022  0.044
2008 Borchers C, Schmidt T, Gärtner F, Kreye H. High strain rate deformation microstructures of stainless steel 316L by cold spraying and explosive powder compaction Applied Physics a: Materials Science and Processing. 90: 517-526. DOI: 10.1007/s00339-007-4314-0  0.044
2012 Cohen Freue GV, Borchers CH. Multiple reaction monitoring (MRM): principles and application to coronary artery disease. Circulation. Cardiovascular Genetics. 5: 378. PMID 22715283 DOI: 10.1161/CIRCGENETICS.111.959528  0.044
2008 Borchers C, Morozova OS, Khomenko TI, Leonov AV, Kurmaev EZ, Moewes A, Pundt A. Ti/C and Ti/h-BN nanocomposites: Comparison of hydrogen sorption/desorption properties Chemical Physics Letters. 465: 82-85. DOI: 10.1016/j.cplett.2008.09.054  0.043
2006 Borchers C, Stichtenoth D, Müller S, Schwen D, Ronning C. Catalyst-nanostructure interaction and growth of ZnS nanobelts Nanotechnology. 17: 1067-1071. DOI: 10.1088/0957-4484/17/4/037  0.043
2002 Borchers C, Leonov AV, Morozova OS. Mechanical activation of structural and chemical transformations in a Zr-C-H system in two stages Journal of Physical Chemistry B. 106: 1843-1848. DOI: 10.1021/jp0125505  0.042
2013 Chen YZ, Csiszár G, Cizek J, Westerkamp S, Borchers C, Ungár T, Goto S, Liu F, Kirchheim R. Defects in carbon-rich ferrite of cold-drawn pearlitic steel wires Metallurgical and Materials Transactions a: Physical Metallurgy and Materials Science. 44: 3882-3889. DOI: 10.1007/S11661-013-1723-X  0.042
2017 Han J, Higgins R, Lim MD, Lin K, Yang J, Borchers CH. Short-Term Stabilities of 21 Amino Acids in Dried Blood Spots. Clinical Chemistry. PMID 29097508 DOI: 10.1373/clinchem.2017.278457  0.041
2005 Grap MJ, Borchers CT, Munro CL, Elswick RK, Sessler CN. Actigraphy in the critically ill: correlation with activity, agitation, and sedation. American Journal of Critical Care : An Official Publication, American Association of Critical-Care Nurses. 14: 52-60. PMID 15608109 DOI: 10.4037/Ajcc2005.14.1.52  0.041
2014 Borchers C, Lehmberg A, Deutges M, Cižek J, Kirchheim R. Effect of annealing on point defect population in cold-drawn pearlitic steel wires Scripta Materialia. 86: 17-19. DOI: 10.1016/J.Scriptamat.2014.04.016  0.041
2014 Li Y, Raabe D, Herbig M, Choi PP, Goto S, Kostka A, Yarita H, Borchers C, Kirchheim R. Segregation stabilizes nanocrystalline bulk steel with near theoretical strength. Physical Review Letters. 113: 106104. PMID 25238372 DOI: 10.1103/Physrevlett.113.106104  0.041
2020 Brosschot TP, Lawrence KM, Kennedy MH, FitzPatrick RD, Moeller BE, Han J, Borchers C, Reynolds LA. A49 CO-INFECTION WITH PARASITIC WORMS ENHANCES THE ABILITY OF SALMONELLA TO COLONIZE THE GUT LUMEN AND DEWORMING RESTORES COLONIZATION RESISTANCE TO SALMONELLA Journal of the Canadian Association of Gastroenterology. 3: 58-59. DOI: 10.1093/jcag/gwz047.048  0.041
2011 Chen YZ, Csiszár G, Cizek J, Borchers C, Ungár T, Goto S, Kirchheim R. On the formation of vacancies in α-ferrite of a heavily cold-drawn pearlitic steel wire Scripta Materialia. 64: 390-393. DOI: 10.1016/J.Scriptamat.2010.10.039  0.04
2015 Maaß R, Birckigt P, Borchers C, Samwer K, Volkert CA. Long range stress fields and cavitation along a shear band in a metallic glass: The local origin of fracture Acta Materialia. 98: 94-102. DOI: 10.1016/j.actamat.2015.06.062  0.04
2007 Cusenza S, Borchers C, Carpene E, Schaaf P. The Gibbs-Thomson effect in magnetron-sputtered austenitic stainless steel films Journal of Physics Condensed Matter. 19. DOI: 10.1088/0953-8984/19/10/106211  0.038
2009 Borchers C, Schroers J, Busch R. Prediction of spinodal wavelength in continuously cooled metallic liquid Annalen Der Physik (Leipzig). 18: 4-12. DOI: 10.1002/Andp.200810330  0.038
1995 Busch R, Gärtner F, Borchers C, Haasen P, Bormann R. Microstructure development during rapid solidification of highly supersaturated Cu-Co alloys Acta Metallurgica Et Materialia. 43: 3467-3475. DOI: 10.1016/0956-7151(95)00038-W  0.037
2005 Weissenberger-Eibl MA, Borchers CHJ. Rethinking knowledge management - Technology in the area of tension between information and knowledge Wmsci 2005 - the 9th World Multi-Conference On Systemics, Cybernetics and Informatics, Proceedings. 6: 323-328.  0.037
2006 Borchers C, Müller S, Stichtenoth D, Schwen D, Ronning C. Catalyst-nanostructure interaction in the growth of 1-D ZnO nanostructures Journal of Physical Chemistry B. 110: 1656-1660. DOI: 10.1021/jp054476m  0.037
2013 Eckle T, Brodsky K, Bonney M, Packard T, Han J, Borchers CH, Mariani TJ, Kominsky DJ, Mittelbronn M, Eltzschig HK. HIF1A reduces acute lung injury by optimizing carbohydrate metabolism in the alveolar epithelium. Plos Biology. 11: e1001665. PMID 24086109 DOI: 10.1371/journal.pbio.1001665  0.037
2012 Hamric AB, Borchers CT, Epstein EG. Development and Testing of an Instrument to Measure Moral Distress in Healthcare Professionals Ajob Primary Research. 3: 1-9. DOI: 10.1080/21507716.2011.652337  0.036
2012 Li YJ, Choi P, Goto S, Borchers C, Raabe D, Kirchheim R. Evolution of strength and microstructure during annealing of heavily cold-drawn 6.3 GPa hypereutectoid pearlitic steel wire Acta Materialia. 60: 4005-4016. DOI: 10.1016/J.Actamat.2012.03.006  0.036
2013 Kresse T, Li YJ, Boll T, Borchers C, Choi P, Al-Kassab T, Raabe D, Kirchheim R. Influence of supersaturated carbon on the diffusion of Ni in ferrite determined by atom probe tomography Scripta Materialia. 69: 424-427. DOI: 10.1016/J.Scriptamat.2013.05.039  0.035
2006 Stoltenhoff T, Borchers C, Gärtner F, Kreye H. Microstructures and key properties of cold-sprayed and thermally sprayed copper coatings Surface and Coatings Technology. 200: 4947-4960. DOI: 10.1016/j.surfcoat.2005.05.011  0.034
2023 Castillo-Castrejon M, Sankofi BM, Murguia SJ, Udeme AA, Cen HH, Xia YH, Thomas NS, Berry WL, Jones KL, Richard VR, Zahedi RP, Borchers CH, Johnson JD, Wellberg EA. FGF1 supports glycolytic metabolism through the estrogen receptor in endocrine-resistant and obesity-associated breast cancer. Breast Cancer Research : Bcr. 25: 99. PMID 37608351 DOI: 10.1186/s13058-023-01699-0  0.034
2022 Smith-Byrne K, Cerani A, Guida F, Zhou S, Agudo A, Aleksandrova K, Barricarte A, Rodríguez-Barranco M, Borchers CH, Gram IT, Han J, Amos CI, Hung RJ, Grankvist K, Nøst TH, et al. Circulating Isovalerylcarnitine and Lung Cancer Risk: Evidence from Mendelian Randomization and Pre-Diagnostic Blood Measurements. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 35839461 DOI: 10.1158/1055-9965.EPI-21-1033  0.034
2013 Li YJ, Choi P, Goto S, Borchers C, Raabe D, Kirchheim R. Atomic scale investigation of redistribution of alloying elements in pearlitic steel wires upon cold-drawing and annealing. Ultramicroscopy. 132: 233-8. PMID 23237772 DOI: 10.1016/J.Ultramic.2012.10.010  0.034
2019 Mohammed Y, Kootte RS, Kopatz WF, Borchers CH, Büller HR, Versteeg HH, Nieuwdorp M, van Mens TE. The intestinal microbiome potentially affects thrombin generation in human subjects. Journal of Thrombosis and Haemostasis : Jth. PMID 31808596 DOI: 10.1111/jth.14699  0.033
2018 Wölter M, Okai CA, Smith D, Ruß M, Rath W, Pecks U, Borchers CH, Glocker MO. Maternal Apolipoprotein B100 Serum Levels are Diminished in Pregnancies with Intrauterine Growth Restriction and Differentiate from Controls. Proteomics. Clinical Applications. e1800017. PMID 29956482 DOI: 10.1002/prca.201800017  0.033
2014 Bround M, Wambolt R, Han J, McAfee D, Pourrier M, Bohunek L, Kulpa J, Fedida D, Brownsey R, Borchers C, Allard M, Johnson J. INDUCIBLE, HETEROZYGOUS RYR2 KNOCKOUT MICE REVEAL A KEY ROLE FOR SR CA2+ RELEASE IN CARDIAC METABOLISM Canadian Journal of Cardiology. 30: S206-S207. DOI: 10.1016/J.Cjca.2014.07.339  0.032
2013 Deutges M, Knorr I, Borchers C, Volkert CA, Kirchheim R. Influence of hydrogen on the deformation morphology of vanadium (1 0 0) micropillars in the α-phase of the vanadium-hydrogen system Scripta Materialia. 68: 71-74. DOI: 10.1016/J.Scriptamat.2012.09.020  0.03
2003 Borchers C, Gärtner F, Stoltenhoff T, Assadi H, Kreye H. Microstructural and macroscopic properties of cold sprayed copper coatings Journal of Applied Physics. 93: 10064-10070. DOI: 10.1063/1.1573740  0.03
2013 Chen YZ, Herz A, Li YJ, Borchers C, Choi P, Raabe D, Kirchheim R. Nanocrystalline Fe-C alloys produced by ball milling of iron and graphite Acta Materialia. 61: 3172-3185. DOI: 10.1016/J.Actamat.2013.02.006  0.03
2015 Borchers C, Garve C, Tiegel M, Deutges M, Herz A, Edalati K, Pippan R, Horita Z, Kirchheim R. Nanocrystalline steel obtained by mechanical alloying of iron and graphite subsequently compacted by high-pressure torsion Acta Materialia. 97: 207-215. DOI: 10.1016/J.Actamat.2015.06.049  0.029
2002 Borchers C, Troche P, Herweg C, Hoffmann J. Interfacial energy induced microstructure of thin magnetic iron/gold multilayer films Journal of Materials Science. 37: 731-736. DOI: 10.1023/A:1013883629605  0.029
2015 Deutges M, Barth HP, Chen Y, Borchers C, Kirchheim R. Hydrogen diffusivities as a measure of relative dislocation densities in palladium and increase of the density by plastic deformation in the presence of dissolved hydrogen Acta Materialia. 82: 266-274. DOI: 10.1016/J.Actamat.2014.09.013  0.029
2005 Suleiman M, Faupel J, Borchers C, Krebs HU, Kirchheim R, Pundt A. Hydrogen absorption behaviour in nanometer sized palladium samples stabilised in soft and hard matrix Journal of Alloys and Compounds. 404: 523-528. DOI: 10.1016/J.Jallcom.2005.01.118  0.028
2014 Yi Y, Gibson J, Birks J, Han J, Borchers CH. Comment on "Profiling oil sands mixtures from industrial developments and natural groundwaters for source identification". Environmental Science & Technology. 48: 11013-4. PMID 25184536 DOI: 10.1021/es503498p  0.028
2011 Lia YJ, Choi P, Borchers C, Chen YZ, Goto S, Raabe D, Kirchheim R. Atom probe tomography characterization of heavily cold drawn pearlitic steel wire Ultramicroscopy. 111: 628-632. DOI: 10.1016/J.Ultramic.2010.11.010  0.027
2012 Borchers C, Randler C. Sleep-wake cycle of adolescents in côte d'ivoire: Influence of age, gender, religion and occupation Chronobiology International. 29: 1366-1375. PMID 23194370 DOI: 10.3109/07420528.2012.741173  0.026
1999 Borchers C. Catastrophic nucleation during decomposition of Cu-0.9at.% Ti Philosophical Magazine a: Physics of Condensed Matter, Structure, Defects and Mechanical Properties. 79: 537-547.  0.025
2009 Suleiman M, Borchers C, Guerdane M, Jisrawi NM, Fritsch D, Kirchheim R, Pundt A. Size and structure of palladium clusters determined by XRD and HREM Zeitschrift Fur Physikalische Chemie. 223: 169-181. DOI: 10.1524/Zpch.2009.6031  0.025
2023 Sultana M, Camicioli R, Dixon RA, Whitehead S, Pieruccini-Faria F, Petrotchenko E, Speechley M, Borchers CH, Montero-Odasso M. A Metabolomics Analysis of a Novel Phenotype of Older Adults at Higher Risk of Dementia. Journal of Alzheimer's Disease : Jad. PMID 37781807 DOI: 10.3233/JAD-230683  0.025
1953 Duke FR, Borchers CE. The kinetics of the cerium(IV)-chloride reaction. The cerium(IV)-thallous reaction in the presence of chloride Journal of the American Chemical Society. 75: 5186-5188.  0.025
2013 Chen YZ, Barth HP, Deutges M, Borchers C, Liu F, Kirchheim R. Increase in dislocation density in cold-deformed Pd using H as a temporary alloying addition Scripta Materialia. 68: 743-746. DOI: 10.1016/J.Scriptamat.2013.01.005  0.025
2004 Borchers C, Gärtner R, Stoltenhoff T, Kreye H. Microstructural bonding features of cold sprayed face centered cubic metals Journal of Applied Physics. 96: 4288-4292. DOI: 10.1063/1.1789278  0.025
2008 Borchers C, Michler T, Pundt A. Effect of hydrogen on the mechanical properties of stainless steels Advanced Engineering Materials. 10: 11-23. DOI: 10.1002/adem.200700252  0.021
2016 Tiegel MC, Martin ML, Lehmberg AK, Deutges M, Borchers C, Kirchheim R. Crack and blister initiation and growth in purified iron due to hydrogen loading Acta Materialia. 115: 24-34. DOI: 10.1016/J.Actamat.2016.05.034  0.019
2014 Chen YZ, Herz A, Borchers C, Shi XH, Ma XY, Liu F, Kirchheim R. Inhibition of grain coarsening in nanocrystalline Fe-C alloys by interaction between carbon and grain boundaries Advanced Materials Research. 904: 184-188. DOI: 10.4028/Www.Scientific.Net/Amr.904.184  0.019
2008 Suleiman M, Fritsch D, Borchers C, Guerdane M, Pundt A. Hydrogen absorption in 3.1 nanometre sized palladium samples: Does structure matter? International Journal of Materials Research. 99: 528-534. DOI: 10.3139/146.101670  0.018
2013 Hamric AB, Borchers CT, Epstein EG. Corrigendum to Development and Testing of an Instrument to Measure Moral Distress in Healthcare Professionals (AJOB Primary Research, 3, 2 (1-9)) Ajob Primary Research. 4: 84. DOI: 10.1080/21507716.2013.819754  0.017
2013 Kresse T, Borchers C, Kirchheim R. Vacancy-carbon complexes in bcc iron: Correlation between carbon content, vacancy concentration and diffusion coefficient Scripta Materialia. 69: 690-693. DOI: 10.1016/J.Scriptamat.2013.08.001  0.017
2002 Borchers C, Michaelsen C. Ultrathin metal/light material multilayer films: Thermodynamics and microstructure Philosophical Magazine a: Physics of Condensed Matter, Structure, Defects and Mechanical Properties. 82: 1195-1205. DOI: 10.1080/01418610110098802  0.016
2011 Borchers CH. Technology development: An overview Molecular and Cellular Proteomics. 10. PMID 21193538 DOI: 10.1074/mcp.E110.007468-1  0.016
2011 Borchers CE. Practical tips for the new workers' compensation case manager Professional Case Management. 16: 158-160. PMID 21475062  0.015
2000 Borchers C, Ricardo P, Michaelsen C. Interfacial wetting and percolation threshold in ultrathin Ni/C multilayer films Philosophical Magazine a: Physics of Condensed Matter, Structure, Defects and Mechanical Properties. 80: 1669-1679.  0.013
1998 Borchers C. Meeting of the regional representatives of the German Foundation for Stroke Assistance, 24-25 April 1998 at Gutersloh Neurologie Und Rehabilitation. 4: 89-90.  0.013
2010 Cizek J, Procházka I, Morozova OS, Borchers C, Pundt A. Size distributions of nanoscopic holes in Ti/h-BN and Ti/B nanocomposites Journal of Applied Physics. 107. DOI: 10.1063/1.3305790  0.012
2016 Borchers C, Lenz M, Deutges M, Klein H, Gärtner F, Hammerschmidt M, Kreye H. Microstructure and mechanical properties of medium-carbon steel bonded on low-carbon steel by explosive welding Materials and Design. 89: 369-376. DOI: 10.1016/j.matdes.2015.09.164  0.012
1976 Ahles C, Borchers C, Krause H. Sleep deprivation therapy; experience with occupational therapy Beschaftigungstherapie Und Rehabilitation. 15: 39-41.  0.011
2013 Gurentsov E, Priemchenko K, Grimm H, Orthner H, Wiggers H, Borchers C, Jander H, Eremin A, Schulz C. Synthesis of small carbon nanoparticles in a microwave plasma flow reactor Zeitschrift Fur Physikalische Chemie. 227: 357-370. DOI: 10.1524/zpch.2013.0369  0.011
2020 Carvalho PC, Souza TACB, Gozzo FC, Borchers C. Editorial. Journal of Proteomics. 228: 103937. PMID 32836145 DOI: 10.1016/j.jprot.2020.103937  0.01
2015 Parker CE, Borchers CH. Editorial. Methods (San Diego, Calif.). 89: 1-3. PMID 26552894 DOI: 10.1016/j.ymeth.2015.10.010  0.01
2013 Commons D, Borchers C. Vendor Credentialing: when RN licensing and certification are not enough Professional Case Management. 18: 317-319. PMID 24100534  0.01
2012 Commons D, Borchers C. Documentation in workers' compensation case management: RU@RISK? Professional Case Management. 17: 296-298. PMID 23034441 DOI: 10.1097/NCM.0b013e31826c841d  0.01
1995 Shroyer MG, Borchers CA. Editors’ comments Journal of Science Teacher Education: the Official Journal of the Association For the Education of Teachers in Science. 6: 124-124. DOI: 10.1007/BF02614569  0.01
1994 Shroyer MG, Borchers CA. Editor’s comments Journal of Science Teacher Education: the Official Journal of the Association For the Education of Teachers in Science. 5: N2-N2. DOI: 10.1007/BF02962855  0.01
1994 Shroyer MG, Borchers CA. Editors’ comments Journal of Science Teacher Education: the Official Journal of the Association For the Education of Teachers in Science. 5: 112-112. DOI: 10.1007/BF02614608  0.01
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