Christoph Borchers - Related publications

Biochemistry and Biophysics University of North Carolina, Chapel Hill, Chapel Hill, NC 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Macias LA, Santos I, Brodbelt JS. Ion Activation Methods for Peptides and Proteins. Analytical Chemistry. PMID 31665881 DOI: 10.1021/acs.analchem.9b04859   
2019 Kreuzer J, Edwards A, Haas W. Multiplexed quantitative phosphoproteomics of cell line and tissue samples. Methods in Enzymology. 626: 41-65. PMID 31606085 DOI: 10.1016/bs.mie.2019.07.027   
2019 Zhou Y, Liu Z, Wang F. [Progress in structural proteomics research]. SE Pu = Chinese Journal of Chromatography. 37: 788-797. PMID 31642248 DOI: 10.3724/SP.J.1123.2019.04015   
2019 Stadlmeier M, Runtsch LS, Streshnev F, Wühr M, Carell T. A Click-chemistry based enrichable cross-linker for structural and protein interaction analysis by mass spectrometry. Chembiochem : a European Journal of Chemical Biology. PMID 31593346 DOI: 10.1002/cbic.201900611   
2019 Khitun A, Slavoff SA. Proteomic Detection and Validation of Translated Small Open Reading Frames. Current Protocols in Chemical Biology. 11: e77. PMID 31750990 DOI: 10.1002/cpch.77   
2019 Chen G, Fan M, Liu Y, Sun B, Liu M, Wu J, Li N, Guo M. Advances in MS Based Strategies for Probing Ligand-Target Interactions: Focus on Soft Ionization Mass Spectrometric Techniques. Frontiers in Chemistry. 7: 703. PMID 31709232 DOI: 10.3389/fchem.2019.00703   
2019 Yang Z, Shen X, Chen D, Sun L. An improved nanoflow RPLC-CZE-MS/MS system with high peak capacity and sensitivity for nanogram bottom-up proteomics. Journal of Proteome Research. PMID 31610113 DOI: 10.1021/acs.jproteome.9b00545   
2019 Wang K, Donnarumma F, Pettit ME, Szot CW, Soloki T, Murray KK. MALDI Imaging Directed Laser Ablation Tissue Microsampling for Data Independent Acquisition Proteomics. Journal of Mass Spectrometry : Jms. PMID 31726477 DOI: 10.1002/jms.4475   
2019 Li G, Ma F, Cao Q, Zheng Z, DeLaney K, Liu R, Li L. Nanosecond photochemically promoted click chemistry for enhanced neuropeptide visualization and rapid protein labeling. Nature Communications. 10: 4697. PMID 31619683 DOI: 10.1038/s41467-019-12548-0   
2019 Steigenberger B, Pieters RJ, Heck AJR, Scheltema RA. PhoX: An IMAC-Enrichable Cross-Linking Reagent. Acs Central Science. 5: 1514-1522. PMID 31572778 DOI: 10.1021/acscentsci.9b00416   
2019 Alevra M, Mandad S, Ischebeck T, Urlaub H, Rizzoli SO, Fornasiero EF. A mass spectrometry workflow for measuring protein turnover rates in vivo. Nature Protocols. PMID 31685960 DOI: 10.1038/s41596-019-0222-y   
2019 Zohora FT, Rahman MZ, Tran NH, Xin L, Shan B, Li M. DeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map. Scientific Reports. 9: 17168. PMID 31748623 DOI: 10.1038/s41598-019-52954-4   
2019 Lumpkin R, Komives EA. DECA, a comprehensive, automatic post-processing program for HDX-MS data. Molecular & Cellular Proteomics : McP. PMID 31594786 DOI: 10.1074/mcp.TIR119.001731   
2019 Townsend JA, Keener JE, Miller Z, Prell JS, Marty MT. Imidazole Derivatives Improve Charge Reduction and Stabilization for Native Mass Spectrometry. Analytical Chemistry. PMID 31638377 DOI: 10.1021/acs.analchem.9b04263   
2019 Lund PJ, Lehman SM, Garcia BA. Quantitative analysis of global protein lysine methylation by mass spectrometry. Methods in Enzymology. 626: 475-498. PMID 31606088 DOI: 10.1016/bs.mie.2019.07.036   
2019 Li T, Chen L, Gan M. Quality control of imbalanced mass spectra from isotopic labeling experiments. Bmc Bioinformatics. 20: 549. PMID 31694522 DOI: 10.1186/s12859-019-3170-1   
2019 Park J, Oh HJ, Han D, Wang JI, Park IA, Ryu HS, Kim Y. Parallel Reaction Monitoring-Mass Spectrometry (PRM-MS)-Based Targeted Proteomic Surrogates for Intrinsic Subtypes in Breast Cancer: Comparative Analysis with Immunohistochemical Phenotypes. Journal of Proteome Research. PMID 31755719 DOI: 10.1021/acs.jproteome.9b00490   
2019 Johnson R, Searle BC, Nunn BL, Gilmore JM, Phillips M, Amemiya CT, Heck M, MacCoss MJ. Assessing protein sequence database suitability using de novo sequencing. Molecular & Cellular Proteomics : McP. PMID 31732549 DOI: 10.1074/mcp.TIR119.001752   
2019 Carling RS, John K, Churchus R, Turner C, Dalton RN. Validation of a rapid, comprehensive and clinically relevant amino acid profile by underivatised liquid chromatography tandem mass spectrometry. Clinical Chemistry and Laboratory Medicine. PMID 31622240 DOI: 10.1515/cclm-2019-0604   
2019 Havlikova J, Randall EC, Griffiths RL, Swales JG, Goodwin RJA, Bunch J, Styles IB, Cooper HJ. Quantitative Imaging of Proteins in Tissue by Stable Isotope Labelled Mimetic Liquid Extraction Surface Analysis (SLiM LESA) Mass Spectrometry. Analytical Chemistry. PMID 31660728 DOI: 10.1021/acs.analchem.9b04148   
2019 Merkley ED, Burnum-Johnson KE, Anderson LN, Jenson SC, Wahl KL. Uniformly N-Labeled Recombinant Ricin A-chain as an Internal Retention Time Standard for Increased Confidence in Forensic Identification of Ricin by Untargeted Nanoflow Liquid Chromatography-Tandem Mass Spectrometry. Analytical Chemistry. PMID 31596564 DOI: 10.1021/acs.analchem.9b03389   
2019 Zhang H, Liu P, Guo T, Zhao H, Bensaddek D, Aebersold R, Xiong L. Arabidopsis proteome and the mass spectral assay library. Scientific Data. 6: 278. PMID 31757973 DOI: 10.1038/s41597-019-0294-0   
2019 Ma B, Ding Y, Li C, Li M, Ma F, Yuan Y. Comparative Proteomic Analysis Reveals Key Proteins Linked to the Accumulation of Soluble Sugars and Organic Acids in the Mature Fruits of the Wild Species. Plants (Basel, Switzerland). 8. PMID 31717908 DOI: 10.3390/plants8110488   
2019 Kimura S, Fujisaka A, Obika S. Nucleobase Derivatives Induce In-Source Decay of Oligonucleotides as New MALDI Matrices. Rapid Communications in Mass Spectrometry : Rcm. PMID 31658399 DOI: 10.1002/rcm.8620   
2019 Galey MM, Young AN, Petukhova VZ, Wang M, Wang J, Salvi A, Russo A, Burdette JE, Sanchez LM. Detection of Ovarian Cancer Using Samples Sourced from the Vaginal Microenvironment. Journal of Proteome Research. PMID 31738564 DOI: 10.1021/acs.jproteome.9b00694   
2019 Gao M, Jia X, Huang X, Wang W, Yao G, Chang Y, Ouyang H, Li T, He J. Correlation between Quality and Geographical Origins of , Based on the Qualitative and Quantitative Determination of Chemical Markers Combined with Chemical Pattern Recognition. Molecules (Basel, Switzerland). 24. PMID 31597295 DOI: 10.3390/molecules24193621   
2019 Wandy J, Davies V, J J van der Hooft J, Weidt S, Daly R, Rogers S. In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics. Metabolites. 9. PMID 31600991 DOI: 10.3390/metabo9100219   
2019 Nakamura M, Moritsuna M, Yuda K, Fujimura S, Sugiura Y, Shimma S, Nishimoto K, Nishikawa T, Suematsu M, Ogawa S, Higashi T. Quantitative MALDI-MS/MS assay for serum cortisol through charged derivatization. Journal of Pharmaceutical and Biomedical Analysis. 178: 112912. PMID 31610394 DOI: 10.1016/j.jpba.2019.112912   
2019 Zhang X, Sadowski P, Punyadeera C. Evaluation of sample preparation methods for label-free quantitative profiling of salivary proteome. Journal of Proteomics. 103532. PMID 31629056 DOI: 10.1016/j.jprot.2019.103532   
2019 Kawata N, Kang D, Aiuchi T, Obama T, Yoshitake O, Shibata T, Takimoto M, Itabe H, Honda K. Proteomics of human glomerulonephritis by laser microdissection and liquid chromatography-tandem mass spectrometry. Nephrology (Carlton, Vic.). PMID 31707756 DOI: 10.1111/nep.13676   
2019 Doellinger J, Schneider A, Hoeller M, Lasch P. Sample Preparation by Easy Extraction and Digestion (SPEED) - A Universal, Rapid, and Detergent-free Protocol for Proteomics based on Acid Extraction. Molecular & Cellular Proteomics : McP. PMID 31754045 DOI: 10.1074/mcp.TIR119.001616   
2019 Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanović S, Rammensee HG, Kohlbacher O. MHCquant: Automated and reproducible data analysis for immunopeptidomics. Journal of Proteome Research. PMID 31589052 DOI: 10.1021/acs.jproteome.9b00313   
2019 Schroeter ER, Blackburn K, Goshe MB, Schweitzer MH. Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses. Royal Society Open Science. 6: 181433. PMID 31598217 DOI: 10.1098/rsos.181433   
2019 King AM, Trengove RD, Mullin LG, Rainville PD, Isaac G, Plumb RS, Gethings LA, Wilson ID. Rapid profiling method for the analysis of lipids in human plasma using ion mobility enabled-reversed phase-ultra high performance liquid chromatography/mass spectrometry. Journal of Chromatography. A. 460597. PMID 31619360 DOI: 10.1016/j.chroma.2019.460597   
2019 Zhou Y, Chen S, Qiao J, Cui Y, Yuan C, He L, Ouyang J. Study of the noncovalent interactions of ginsenosides and amyloid-β-peptide by CSI-MS and molecular docking. Journal of Mass Spectrometry : Jms. PMID 31671229 DOI: 10.1002/jms.4463   
2019 Palacio Lozano DC, Gavard R, Arenas-Diaz JP, Thomas MJ, Stranz DD, Mejía-Ospino E, Guzman A, Spencer SEF, Rossell D, Barrow MP. Pushing the analytical limits: new insights into complex mixtures using mass spectra segments of constant ultrahigh resolving power. Chemical Science. 10: 6966-6978. PMID 31588263 DOI: 10.1039/c9sc02903f   
2019 Ivanov DG, Indeykina MI, Pekov SI, Iusupov AE, Bugrova AE, Kononikhin AS, Nikolaev EN, Popov IA. Probabilistic model applied to ion abundances in product-ion spectra: quantitative analysis of aspartic acid isomerization in peptides. Analytical and Bioanalytical Chemistry. PMID 31705222 DOI: 10.1007/s00216-019-02174-6   
2019 Riboni N, Quaranta A, Motwani HV, Österlund N, Gräslund A, Bianchi F, Ilag LL. Solvent-Assisted Paper Spray Ionization Mass Spectrometry (SAPSI-MS) for the Analysis of Biomolecules and Biofluids. Scientific Reports. 9: 10296. PMID 31311939 DOI: 10.1038/s41598-019-45358-x   
2019 Stadlmann J, Hudecz O, Krššáková G, Ctortecka C, Van Raemdonck G, Op De Beeck J, Desmet G, Penninger JM, Jacobs P, Mechtler K. Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography. Analytical Chemistry. PMID 31612716 DOI: 10.1021/acs.analchem.9b02899   
2019 Sun J, Shi J, Wang Y, Wu S, Zhao L, Li Y, Wang H, Chang L, Lyu Z, Wu J, Liu F, Li W, He F, Zhang Y, Xu P. Open-pFind Enhances the Identification of Missing Proteins from Human Testis Tissue. Journal of Proteome Research. PMID 31657219 DOI: 10.1021/acs.jproteome.9b00376   
2019 Vincent D, Ezernieks V, Rochfort S, Spangenberg G. A Multiple Protease Strategy to Optimise the Shotgun Proteomics of Mature Medicinal Cannabis Buds. International Journal of Molecular Sciences. 20. PMID 31717952 DOI: 10.3390/ijms20225630   
2019 Dubin RF, Rhee EP. Proteomics and Metabolomics in Kidney Disease, including Insights into Etiology, Treatment, and Prevention. Clinical Journal of the American Society of Nephrology : Cjasn. PMID 31636087 DOI: 10.2215/CJN.07420619   
2019 MacMullan MA, Dunn ZS, Graham N, Yang L, Wang P. Quantitative Proteomics and Metabolomics Reveal Biomarkers of Disease as Potential Immunotherapy Targets and Indicators of Therapeutic Efficacy. Theranostics. 9: 7872-7888. PMID 31695805 DOI: 10.7150/thno.37373   
2019 Melani RD, Srzentić K, Gerbasi VR, McGee JP, Huguet R, Fornelli L, Kelleher NL. Direct measurement of light and heavy antibody chains using ion mobility and middle-down mass spectrometry. Mabs. 11: 1351-1357. PMID 31607219 DOI: 10.1080/19420862.2019.1668226   
2019 Hao L, Zhu Y, Wei P, Johnson J, Buchberger A, Frost D, Kao WJ, Li L. Metandem: An online software tool for mass spectrometry-based isobaric labeling metabolomics. Analytica Chimica Acta. 1088: 99-106. PMID 31623721 DOI: 10.1016/j.aca.2019.08.046   
2019 Madiona RMT, Welch NG, Muir BW, Winkler DA, Pigram PJ. Rapid evaluation of immobilized immunoglobulins using automated mass-segmented ToF-SIMS. Biointerphases. 14: 061002. PMID 31747758 DOI: 10.1063/1.5121450   
2019 Mack S, Arnold D, Bogdan G, Bousse L, Danan L, Dolnik V, Ducusin M, Gwerder E, Herring C, Jensen M, Ji J, Lacy S, Richter C, Walton I, Gentalen E. A Novel Microchip-based Imaged CIEF-MS System for Comprehensive Characterization and Identification of Biopharmaceutical Charge Variants. Electrophoresis. PMID 31663138 DOI: 10.1002/elps.201900325   
2019 Maus A, Kemp J, Milosevic D, Renuse S, Pandey A, Singh RJ, Grebe SKG. Center of Mass Calculation in Combination with MS/MS allows Robust Identification of Single Amino Acid Polymorphisms in Clinical Measurements of Insulin-Like Growth Factor 1. Journal of Proteome Research. PMID 31736316 DOI: 10.1021/acs.jproteome.9b00494   
2019 Maus A, Bisha B, Fagerquist C, Basile F. Detection and Identification of a Protein Biomarker in Antibiotic Resistant E. coli using intact protein LC Offline MALDI-MS and MS/MS. Journal of Applied Microbiology. PMID 31715076 DOI: 10.1111/jam.14507   
2019 DeLaney K, Li L. Capillary electrophoresis coupled to MALDI mass spectrometry imaging with large volume sample stacking injection for improved coverage of C. borealis neuropeptidome. The Analyst. PMID 31723949 DOI: 10.1039/c9an01883b