| Year |
Citation |
Score |
| 2023 |
Herbert C, Ohrnberger CL, Quinlisk E, Addepalli B, Limbach PA. Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS). Biomedicines. 11. PMID 38137491 DOI: 10.3390/biomedicines11123270 |
0.344 |
|
| 2023 |
Ross RL, Yu N, Zhao R, Wood A, Limbach PA. Automated Identification of Modified Nucleosides during HRAM-LC-MS/MS using a Metabolomics ID Workflow with Neutral Loss Detection. Journal of the American Society For Mass Spectrometry. PMID 37948765 DOI: 10.1021/jasms.3c00298 |
0.319 |
|
| 2022 |
Thakur P, Atway J, Limbach PA, Addepalli B. RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site. International Journal of Molecular Sciences. 23. PMID 35806025 DOI: 10.3390/ijms23137021 |
0.33 |
|
| 2020 |
Jora M, Borland K, Abernathy S, Zhao R, Kelley M, Kellner S, Addepalli B, Limbach PA. Chemical amination/imination of carbonothiolated nucleosides during RNA hydrolysis. Angewandte Chemie (International Ed. in English). PMID 33125801 DOI: 10.1002/anie.202010793 |
0.334 |
|
| 2020 |
Liu Y, Rodriguez Y, Ross RL, Zhao R, Watts JA, Grunseich C, Bruzel A, Li D, Burdick JT, Prasad R, Crouch RJ, Limbach PA, Wilson SH, Cheung VG. RNA abasic sites in yeast and human cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 32788345 DOI: 10.1073/Pnas.2011511117 |
0.323 |
|
| 2019 |
Thakur P, Estevez M, Lobue PA, Limbach PA, Addepalli B. Improved RNA modification mapping of cellular non-coding RNAs using C- and U-specific RNases. The Analyst. PMID 31825413 DOI: 10.1039/C9An02111F |
0.396 |
|
| 2019 |
Paulines MJ, Wetzel C, Limbach PA. Using Spectral Matching to Interpret LC-MS/MS Data During RNA Modification Mapping. Journal of Mass Spectrometry : Jms. PMID 31663233 DOI: 10.1002/Jms.4456 |
0.422 |
|
| 2019 |
Lobue PA, Jora M, Addepalli B, Limbach PA. Oligonucleotide analysis by hydrophilic interaction liquid chromatography-mass spectrometry in the absence of ion-pair reagents. Journal of Chromatography. A. PMID 30772056 DOI: 10.1016/J.Chroma.2019.02.016 |
0.448 |
|
| 2019 |
Yu N, Jora M, Solivio B, Thakur P, Acevedo-Rocha CG, Randau L, de Crécy-Lagard V, Addepalli B, Limbach PA. Transfer RNA Modification Profiles and Codon Decoding Strategies in . Journal of Bacteriology. PMID 30745370 DOI: 10.1128/Jb.00690-18 |
0.384 |
|
| 2018 |
Lobue PA, Yu N, Jora M, Abernathy S, Limbach PA. Improved Application of RNAModMapper - an RNA Modification Mapping Software Tool - for Analysis of Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Data. Methods (San Diego, Calif.). PMID 30366097 DOI: 10.1016/J.Ymeth.2018.10.012 |
0.443 |
|
| 2018 |
Solivio B, Yu N, Addepalli B, Limbach PA. Improving RNA modification mapping sequence coverage by LC-MS through a nonspecific RNase U2-E49A mutant. Analytica Chimica Acta. 1036: 73-79. PMID 30253839 DOI: 10.1016/J.Aca.2018.08.012 |
0.424 |
|
| 2018 |
Sarin LP, Kienast SD, Leufken J, Ross RL, Dziergowska A, Debiec K, Sochacka E, Limbach PA, Fufezan C, Drexler HCA, Leidel SA. Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels. Rna (New York, N.Y.). PMID 30012570 DOI: 10.1261/Rna.065482.117 |
0.43 |
|
| 2018 |
Jora M, Burns AP, Ross RL, Lobue PA, Zhao R, Palumbo CM, Beal PA, Addepalli B, Limbach PA. Differentiating Positional Isomers of Nucleoside Modifications by Higher-Energy Collisional Dissociation Mass Spectrometry (HCD MS). Journal of the American Society For Mass Spectrometry. PMID 29949056 DOI: 10.1007/S13361-018-1999-6 |
0.464 |
|
| 2018 |
Sharma IM, Rappé MC, Addepalli B, Grabow WW, Zhuang Z, Abeysirigunawardena SC, Limbach PA, Jaeger L, Woodson SA. A metastable rRNA junction essential for bacterial 30S biogenesis. Nucleic Acids Research. 46: 5182-5194. PMID 29850893 DOI: 10.1093/Nar/Gky120 |
0.334 |
|
| 2018 |
Baldridge KC, Jora M, Maranhao AC, Quick MM, Addepalli B, Brodbelt JS, Ellington AD, Limbach PA, Contreras LM. Directed Evolution of Heterologous tRNAs Leads to Reduced Dependence on Post-transcriptional Modifications. Acs Synthetic Biology. PMID 29694026 DOI: 10.1021/Acssynbio.7B00421 |
0.369 |
|
| 2018 |
Sun C, Jora M, Solivio B, Limbach PA, Addepalli B. The Effects of Ultraviolet Radiation on Nucleoside Modifications in RNA. Acs Chemical Biology. PMID 29400945 DOI: 10.1021/Acschembio.7B00898 |
0.382 |
|
| 2017 |
Paulines MJ, Limbach PA. Stable Isotope Labeling for Improved Comparative Analysis of RNA Digests by Mass Spectrometry. Journal of the American Society For Mass Spectrometry. 28: 551-561. PMID 31940207 DOI: 10.1021/jasms.8b05496 |
0.325 |
|
| 2017 |
Yu N, Lobue PA, Cao X, Limbach PA. RNAModMapper: RNA modification mapping software for analysis of liquid chromatography tandem mass spectrometry data. Analytical Chemistry. PMID 28942636 DOI: 10.1021/Acs.Analchem.7B01780 |
0.45 |
|
| 2017 |
Addepalli B, Venus S, Thakur P, Limbach PA. Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA. Analytical and Bioanalytical Chemistry. PMID 28730304 DOI: 10.1007/S00216-017-0500-X |
0.429 |
|
| 2017 |
Paulines MJ, Limbach PA. Comparative Analysis of Ribonucleic Acid Digests (CARD) by Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1562: 19-32. PMID 28349451 DOI: 10.1007/978-1-4939-6807-7_2 |
0.453 |
|
| 2017 |
Borland K, Limbach PA. Applications and Advantages of Stable Isotope Phosphate Labeling of RNA in Mass Spectrometry. Topics in Current Chemistry (Journal). 375: 33. PMID 28285458 DOI: 10.1007/S41061-017-0121-Z |
0.463 |
|
| 2017 |
Ross RL, Cao X, Limbach PA. Mapping Post-Transcriptional Modifications onto Transfer Ribonucleic Acid Sequences by Liquid Chromatography Tandem Mass Spectrometry. Biomolecules. 7. PMID 28241457 DOI: 10.3390/biom7010021 |
0.344 |
|
| 2017 |
Paulines MJ, Limbach PA. Stable Isotope Labeling for Improved Comparative Analysis of RNA Digests by Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 28105550 DOI: 10.1007/S13361-017-1593-3 |
0.436 |
|
| 2016 |
Addepalli B, Limbach PA. Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) is Catalyzed by the Dual Specificity Enzyme RluF. The Journal of Biological Chemistry. PMID 27551044 DOI: 10.1074/Jbc.M116.747865 |
0.432 |
|
| 2016 |
Limbach PA, Paulines MJ. Going global: the new era of mapping modifications in RNA. Wiley Interdisciplinary Reviews. Rna. PMID 27251302 DOI: 10.1002/Wrna.1367 |
0.357 |
|
| 2016 |
Ross R, Cao X, Yu N, Limbach PA. Sequence mapping of transfer RNA chemical modifications by liquid chromatography tandem mass spectrometry. Methods (San Diego, Calif.). PMID 27033178 DOI: 10.1016/J.Ymeth.2016.03.016 |
0.479 |
|
| 2016 |
Delatte B, Wang F, Ngoc LV, Collignon E, Bonvin E, Deplus R, Calonne E, Hassabi B, Putmans P, Awe S, Wetzel C, Kreher J, Soin R, Creppe C, Limbach PA, et al. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine. Science (New York, N.Y.). 351: 282-285. PMID 26816380 DOI: 10.1126/Science.Aac5253 |
0.319 |
|
| 2015 |
Wetzel C, Limbach PA. Mass spectrometry of modified RNAs: recent developments. The Analyst. PMID 26501195 DOI: 10.1039/C5An01797A |
0.45 |
|
| 2015 |
Ross RL, Sauter AD, Limbach PA. Induction based fluidics (IBF) for droplet-based mass spectrometric analysis of oligonucleotides. Journal of Mass Spectrometry : Jms. 50: 1175-9. PMID 26456787 DOI: 10.1002/Jms.3636 |
0.377 |
|
| 2015 |
Addepalli B, Lesner NP, Limbach PA. Detection of RNA nucleoside modifications with the uridine-specific ribonuclease MC1 from Momordica charantia. Rna (New York, N.Y.). 21: 1746-56. PMID 26221047 DOI: 10.1261/Rna.052472.115 |
0.438 |
|
| 2015 |
Cao X, Limbach PA. Enhanced detection of post-transcriptional modifications using a mass-exclusion list strategy for RNA modification mapping by LC-MS/MS. Analytical Chemistry. 87: 8433-40. PMID 26176336 DOI: 10.1021/Acs.Analchem.5B01826 |
0.459 |
|
| 2015 |
Sample PJ, Ko?ený L, Paris Z, Gaston KW, Rubio MA, Fleming IM, Hinger S, Horáková E, Limbach PA, Lukeš J, Alfonzo JD. A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria. Nucleic Acids Research. 43: 4262-73. PMID 25845597 DOI: 10.1093/Nar/Gkv286 |
0.326 |
|
| 2015 |
Sample PJ, Gaston KW, Alfonzo JD, Limbach PA. RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids. Nucleic Acids Research. 43: e64. PMID 25820423 DOI: 10.1093/Nar/Gkv145 |
0.455 |
|
| 2015 |
Houser WM, Butterer A, Addepalli B, Limbach PA. Combining recombinant ribonuclease U2 and protein phosphatase for RNA modification mapping by liquid chromatography-mass spectrometry. Analytical Biochemistry. 478: 52-8. PMID 25797349 DOI: 10.1016/J.Ab.2015.03.016 |
0.467 |
|
| 2014 |
Gaston KW, Limbach PA. The identification and characterization of non-coding and coding RNAs and their modified nucleosides by mass spectrometry. Rna Biology. 11: 1568-85. PMID 25616408 DOI: 10.4161/15476286.2014.992280 |
0.443 |
|
| 2014 |
Li S, Limbach PA. Identification of RNA sequence isomer by isotope labeling and LC-MS/MS. Journal of Mass Spectrometry : Jms. 49: 1191-8. PMID 25395135 DOI: 10.1002/Jms.3449 |
0.671 |
|
| 2014 |
Puri P, Wetzel C, Saffert P, Gaston KW, Russell SP, Cordero Varela JA, van der Vlies P, Zhang G, Limbach PA, Ignatova Z, Poolman B. Systematic identification of tRNAome and its dynamics in Lactococcus lactis. Molecular Microbiology. 93: 944-56. PMID 25040919 DOI: 10.1111/Mmi.12710 |
0.362 |
|
| 2014 |
Wetzel C, Li S, Limbach PA. Metabolic de-isotoping for improved LC-MS characterization of modified RNAs. Journal of the American Society For Mass Spectrometry. 25: 1114-23. PMID 24760295 DOI: 10.1007/S13361-014-0889-9 |
0.642 |
|
| 2014 |
Dator RP, Gaston KW, Limbach PA. Multiple enzymatic digestions and ion mobility separation improve quantification of bacterial ribosomal proteins by data independent acquisition liquid chromatography-mass spectrometry. Analytical Chemistry. 86: 4264-70. PMID 24738621 DOI: 10.1021/Ac404020J |
0.41 |
|
| 2013 |
Clatterbuck Soper SF, Dator RP, Limbach PA, Woodson SA. In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates. Molecular Cell. 52: 506-16. PMID 24207057 DOI: 10.1016/J.Molcel.2013.09.020 |
0.333 |
|
| 2013 |
Wong SY, Javid B, Addepalli B, Piszczek G, Strader MB, Limbach PA, Barry CE. Functional role of methylation of G518 of the 16S rRNA 530 loop by GidB in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. 57: 6311-8. PMID 24100503 DOI: 10.1128/Aac.00905-13 |
0.315 |
|
| 2013 |
Wetzel C, Limbach PA. The global identification of tRNA isoacceptors by targeted tandem mass spectrometry. The Analyst. 138: 6063-72. PMID 23954863 DOI: 10.1039/C3An01224G |
0.418 |
|
| 2013 |
Nayak NR, Putnam AA, Addepalli B, Lowenson JD, Chen T, Jankowsky E, Perry SE, Dinkins RD, Limbach PA, Clarke SG, Downie AB. An Arabidopsis ATP-dependent, DEAD-box RNA helicase loses activity upon IsoAsp formation but is restored by PROTEIN ISOASPARTYL METHYLTRANSFERASE. The Plant Cell. 25: 2573-86. PMID 23903319 DOI: 10.1105/Tpc.113.113456 |
0.308 |
|
| 2013 |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ. Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position. Journal of Molecular Biology. 425: 3888-906. PMID 23727144 DOI: 10.1016/J.Jmb.2013.05.018 |
0.334 |
|
| 2013 |
Russell SP, Limbach PA. Evaluating the reproducibility of quantifying modified nucleosides from ribonucleic acids by LC-UV-MS. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 923: 74-82. PMID 23500350 DOI: 10.1016/J.Jchromb.2013.02.010 |
0.448 |
|
| 2013 |
Li S, Limbach PA. Mass spectrometry sequencing of transfer ribonucleic acids by the comparative analysis of RNA digests (CARD) approach. The Analyst. 138: 1386-94. PMID 23295341 DOI: 10.1039/C2An36515D |
0.585 |
|
| 2013 |
Easter R, Barry C, Caruso J, Limbach P. Separation and identification of phosphorothioate oligonucleotides by HILIC-ESIMS Analytical Methods. 5: 2657-2659. DOI: 10.1039/C3Ay26519F |
0.425 |
|
| 2012 |
Li S, Limbach PA. Method for comparative analysis of ribonucleic acids using isotope labeling and mass spectrometry. Analytical Chemistry. 84: 8607-13. PMID 22985222 DOI: 10.1021/Ac301638C |
0.6 |
|
| 2012 |
Guy MP, Podyma BM, Preston MA, Shaheen HH, Krivos KL, Limbach PA, Hopper AK, Phizicky EM. Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop. Rna (New York, N.Y.). 18: 1921-33. PMID 22912484 DOI: 10.1261/Rna.035287.112 |
0.763 |
|
| 2012 |
Catron B, Caruso JA, Limbach PA. Selective detection of peptide-oligonucleotide heteroconjugates utilizing capillary HPLC-ICPMS. Journal of the American Society For Mass Spectrometry. 23: 1053-61. PMID 22451333 DOI: 10.1007/S13361-012-0366-2 |
0.313 |
|
| 2012 |
Butterer A, Zorc M, Castleberry CM, Limbach PA. Using immobilized enzymes to reduce RNase contamination in RNase mapping of transfer RNAs by mass spectrometry. Analytical and Bioanalytical Chemistry. 402: 2701-11. PMID 22327965 DOI: 10.1007/S00216-012-5741-0 |
0.819 |
|
| 2012 |
Wetzel C, Limbach PA. Global identification of transfer RNAs by liquid chromatography-mass spectrometry (LC-MS). Journal of Proteomics. 75: 3450-64. PMID 21982830 DOI: 10.1016/J.Jprot.2011.09.015 |
0.492 |
|
| 2011 |
Krivos KL, Addepalli B, Limbach PA. Removal of 3'-phosphate group by bacterial alkaline phosphatase improves oligonucleotide sequence coverage of RNase digestion products analyzed by collision-induced dissociation mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 25: 3609-16. PMID 22095510 DOI: 10.1002/Rcm.5266 |
0.821 |
|
| 2011 |
Addepalli B, Limbach PA. Mass spectrometry-based quantification of pseudouridine in RNA. Journal of the American Society For Mass Spectrometry. 22: 1363-72. PMID 21953190 DOI: 10.1007/S13361-011-0137-5 |
0.489 |
|
| 2011 |
Nikcevic I, Wyrzykiewicz TK, Limbach PA. DETECTING LOW-LEVEL SYNTHESIS IMPURITIES IN MODIFIED PHOSPHOROTHIOATE OLIGONUCLEOTIDES USING LIQUID CHROMATOGRAPHY - HIGH RESOLUTION MASS SPECTROMETRY. International Journal of Mass Spectrometry. 304: 98-104. PMID 21811394 DOI: 10.1016/J.Ijms.2010.06.001 |
0.44 |
|
| 2011 |
Menezes S, Gaston KW, Krivos KL, Apolinario EE, Reich NO, Sowers KR, Limbach PA, Perona JJ. Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14. Nucleic Acids Research. 39: 7641-55. PMID 21693558 DOI: 10.1093/Nar/Gkr475 |
0.775 |
|
| 2010 |
Addepalli B, Limbach PA, Hunt AG. A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog. Febs Letters. 584: 4408-12. PMID 20888817 DOI: 10.1016/J.Febslet.2010.09.043 |
0.399 |
|
| 2010 |
Easter RN, Kröning KK, Caruso JA, Limbach PA. Separation and identification of oligonucleotides by hydrophilic interaction liquid chromatography (HILIC)-inductively coupled plasma mass spectrometry (ICPMS). The Analyst. 135: 2560-5. PMID 20830328 DOI: 10.1039/C0An00399A |
0.347 |
|
| 2010 |
Castleberry CM, Limbach PA. Relative quantitation of transfer RNAs using liquid chromatography mass spectrometry and signature digestion products. Nucleic Acids Research. 38: e162. PMID 20587503 DOI: 10.1093/Nar/Gkq578 |
0.813 |
|
| 2010 |
Anton BP, Russell SP, Vertrees J, Kasif S, Raleigh EA, Limbach PA, Roberts RJ. Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis. Nucleic Acids Research. 38: 6195-205. PMID 20472640 DOI: 10.1093/Nar/Gkq364 |
0.363 |
|
| 2010 |
Krivos KL, Limbach PA. Sequence analysis of peptide:oligonucleotide heteroconjugates by electron capture dissociation and electron transfer dissociation. Journal of the American Society For Mass Spectrometry. 21: 1387-97. PMID 20435485 DOI: 10.1016/J.Jasms.2010.03.043 |
0.78 |
|
| 2010 |
Fabris D, Limbach PA. Review of the 22nd sanibel conference on mass spectrometry: From structural biology to drug discovery: New roles for mass spectrometry of nucleic acids Journal of the American Society For Mass Spectrometry. 21. PMID 20363647 DOI: 10.1016/J.Jasms.2010.03.001 |
0.385 |
|
| 2010 |
Mandal D, Köhrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Söll D, RajBhandary UL. Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Proceedings of the National Academy of Sciences of the United States of America. 107: 2872-7. PMID 20133752 DOI: 10.1073/Pnas.0914869107 |
0.778 |
|
| 2010 |
Simmons TA, Green-Church KB, Limbach PA. Nucleic Acids and Nucleotides Studied Using Mass Spectrometry Encyclopedia of Spectroscopy and Spectrometry. 1984-1991. DOI: 10.1016/B978-0-12-374413-5.00237-2 |
0.325 |
|
| 2009 |
Castleberry CM, Lilleness K, Baldauff R, Limbach PA. Minimizing 18O/16O back-exchange in the relative quantification of ribonucleic acids. Journal of Mass Spectrometry : Jms. 44: 1195-202. PMID 19484804 DOI: 10.1002/Jms.1596 |
0.79 |
|
| 2009 |
Hamburg DM, Suh MJ, Limbach PA. Limited proteolysis analysis of the ribosome is affected by subunit association. Biopolymers. 91: 410-22. PMID 19213046 DOI: 10.1002/Bip.21161 |
0.734 |
|
| 2009 |
Hossain M, Limbach PA. Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs. Analytical and Bioanalytical Chemistry. 394: 1125-35. PMID 19104781 DOI: 10.1007/S00216-008-2562-2 |
0.666 |
|
| 2008 |
Castleberry CM, Rodicio LP, Limbach PA. Electrospray ionization mass spectrometry of oligonucleotides. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 10.2. PMID 19085982 DOI: 10.1002/0471142700.Nc1002S35 |
0.808 |
|
| 2008 |
Durairaj A, Limbach PA. Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products. Rapid Communications in Mass Spectrometry : Rcm. 22: 3727-34. PMID 18973194 DOI: 10.1002/Rcm.3789 |
0.486 |
|
| 2008 |
Lubman DM, Limbach PA. Mass spectrometry. Preface. Analytica Chimica Acta. 627: 1-2. PMID 18790123 DOI: 10.1016/J.Aca.2008.08.007 |
0.42 |
|
| 2008 |
Durairaj A, Limbach PA. Mass spectrometry of the fifth nucleoside: a review of the identification of pseudouridine in nucleic acids. Analytica Chimica Acta. 623: 117-25. PMID 18620915 DOI: 10.1016/J.Aca.2008.06.027 |
0.42 |
|
| 2008 |
Castleberry CM, Chou CW, Limbach PA. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of oligonucleotides. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 10.1. PMID 18551426 DOI: 10.1002/0471142700.Nc1001S33 |
0.815 |
|
| 2008 |
Durairaj A, Limbach PA. Improving CMC-derivatization of pseudouridine in RNA for mass spectrometric detection. Analytica Chimica Acta. 612: 173-81. PMID 18358863 DOI: 10.1016/J.Aca.2008.02.026 |
0.479 |
|
| 2008 |
Pourshahian S, Limbach PA. Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry. Journal of Mass Spectrometry : Jms. 43: 1081-8. PMID 18320553 DOI: 10.1002/Jms.1391 |
0.41 |
|
| 2008 |
Mecomber JS, Murthy RS, Rajam S, Singh PN, Gudmundsdottir AD, Limbach PA. Photochemical functionalization of polymer surfaces for microfabricated devices. Langmuir : the Acs Journal of Surfaces and Colloids. 24: 3645-53. PMID 18294015 DOI: 10.1021/La7033577 |
0.779 |
|
| 2007 |
Duderstadt RE, Tsuie BM, Macha SF, Limbach PA. Investigation of single-site zirconium azaborolinyl complexes by laser desorption ionization time of flight mass spectrometry. Analytica Chimica Acta. 596: 124-31. PMID 17616249 DOI: 10.1016/J.Aca.2007.05.066 |
0.389 |
|
| 2007 |
Suh MJ, Pourshahian S, Limbach PA. Developing limited proteolysis and mass spectrometry for the characterization of ribosome topography. Journal of the American Society For Mass Spectrometry. 18: 1304-17. PMID 17521915 DOI: 10.1016/J.Jasms.2007.03.028 |
0.652 |
|
| 2007 |
Nikcevic I, Lee SH, Piruska A, Ahn CH, Ridgway TH, Limbach PA, Wehmeyer KR, Heineman WR, Seliskar CJ. Characterization and performance of injection molded poly(methylmethacrylate) microchips for capillary electrophoresis. Journal of Chromatography. A. 1154: 444-53. PMID 17477932 DOI: 10.1016/J.Chroma.2007.03.125 |
0.315 |
|
| 2007 |
Hossain M, Limbach PA. Mass spectrometry-based detection of transfer RNAs by their signature endonuclease digestion products. Rna (New York, N.Y.). 13: 295-303. PMID 17194720 DOI: 10.1261/Rna.272507 |
0.665 |
|
| 2007 |
Suh M, Pourshahian S, Limbach PA. Erratum to: Developing limited proteolysis and mass spectrometry for the characterization of ribosome topography Journal of the American Society For Mass Spectrometry. 18: 1726-1726. DOI: 10.1016/j.jasms.2007.07.025 |
0.61 |
|
| 2006 |
McLachlan A, Borchers M, Velayutham P, Wagner M, Limbach PA. Characterizing the reproducibility of a protein profiling method for the analysis of mouse bronchoalveolar lavage fluid. Journal of Proteome Research. 5: 3059-65. PMID 17081057 DOI: 10.1021/Pr060241R |
0.387 |
|
| 2006 |
Meng Z, Limbach PA. Mass spectrometry of RNA: linking the genome to the proteome. Briefings in Functional Genomics & Proteomics. 5: 87-95. PMID 16769684 DOI: 10.1093/Bfgp/Ell012 |
0.445 |
|
| 2006 |
Carr JF, Hamburg DM, Gregory ST, Limbach PA, Dahlberg AE. Effects of streptomycin resistance mutations on posttranslational modification of ribosomal protein S12. Journal of Bacteriology. 188: 2020-3. PMID 16484214 DOI: 10.1128/Jb.188.5.2020-2023.2006 |
0.593 |
|
| 2006 |
Mecomber JS, Stalcup AM, Hurd D, Halsall HB, Heineman WR, Seliskar CJ, Wehmeyer KR, Limbach PA. Analytical performance of polymer-based microfluidic devices fabricated by computer numerical controlled machining. Analytical Chemistry. 78: 936-41. PMID 16448071 DOI: 10.1021/Ac051523Y |
0.765 |
|
| 2005 |
Suh MJ, Hamburg DM, Gregory ST, Dahlberg AE, Limbach PA. Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry. Proteomics. 5: 4818-31. PMID 16287167 DOI: 10.1002/Pmic.200402111 |
0.703 |
|
| 2005 |
Meng Z, Limbach PA. Shotgun sequencing small oligonucleotides by nozzle-skimmer dissociation and electrospray ionization mass spectrometry. European Journal of Mass Spectrometry (Chichester, England). 11: 221-9. PMID 16046807 DOI: 10.1255/Ejms.736 |
0.429 |
|
| 2005 |
Tummala R, Green-Church KB, Limbach PA. Interactions between sodium dodecyl sulfate micelles and peptides during matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) of proteolytic digests. Journal of the American Society For Mass Spectrometry. 16: 1438-46. PMID 16006141 DOI: 10.1016/J.Jasms.2005.04.006 |
0.394 |
|
| 2005 |
Meng Z, Limbach PA. Quantitation of ribonucleic acids using 18O labeling and mass spectrometry. Analytical Chemistry. 77: 1891-5. PMID 15762601 DOI: 10.1021/Ac048801Y |
0.453 |
|
| 2005 |
Mecomber JS, Hurd D, Limbach PA. Enhanced machining of micron-scale features in microchip molding masters by CNC milling International Journal of Machine Tools and Manufacture. 45: 1542-1550. DOI: 10.1016/J.Ijmachtools.2005.01.016 |
0.758 |
|
| 2005 |
Tummala R, Limbach PA. Serum protein profiling using surfactant-aided matrix-assisted laser desorption/ionization mass spectrometry Analytica Chimica Acta. 551: 137-141. DOI: 10.1016/J.Aca.2005.07.013 |
0.416 |
|
| 2005 |
Mecomber JS, Dupre AL, Singh PND, Gudmundsdottir AD, Limbach PA. Photofunctionalization of polymer microfluidic devices for mass spectrometry Aiche Annual Meeting, Conference Proceedings. 12696. |
0.788 |
|
| 2005 |
Hamburg DM, Suh MJ, Limbach PA, Gregory S, Dahlberg A. Identification of proteins in unsequenced bacterial strains via matrix-assisted laser desorption/ionization mass spectrometry Aiche Annual Meeting, Conference Proceedings. 12423-12427. |
0.604 |
|
| 2005 |
Dupre AL, Dominick WD, Mecomber JS, Halsall HB, Heineman WR, Seliskar CJ, Wehmeyer KR, Limbach PA. Development of polymeric microchips for use in binding studies Aiche Annual Meeting, Conference Proceedings. 12688. |
0.728 |
|
| 2004 |
Tummala R, Limbach PA. Effect of sodium dodecyl sulfate micelles on peptide mass fingerprinting by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 18: 2031-5. PMID 15378713 DOI: 10.1002/Rcm.1588 |
0.416 |
|
| 2004 |
Cameron DM, Gregory ST, Thompson J, Suh MJ, Limbach PA, Dahlberg AE. Thermus thermophilus L11 methyltransferase, PrmA, is dispensable for growth and preferentially modifies free ribosomal protein L11 prior to ribosome assembly. Journal of Bacteriology. 186: 5819-25. PMID 15317787 DOI: 10.1128/Jb.186.17.5819-5825.2004 |
0.576 |
|
| 2004 |
Suh MJ, Limbach PA. Investigation of methods suitable for the matrix-assisted laser desorption/ionization mass spectrometric analysis of proteins from ribonucleoprotein complexes. European Journal of Mass Spectrometry (Chichester, England). 10: 89-99. PMID 15100481 DOI: 10.1255/Ejms.626 |
0.638 |
|
| 2004 |
Meng Z, Simmons-Willis TA, Limbach PA. The use of mass spectrometry in genomics. Biomolecular Engineering. 21: 1-13. PMID 14715314 DOI: 10.1016/J.Bioeng.2003.08.001 |
0.45 |
|
| 2004 |
Meng Z, Limbach PA. RNase mapping of intact nucleic acids by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) and 18O labeling International Journal of Mass Spectrometry. 234: 37-44. DOI: 10.1016/J.Ijms.2004.01.004 |
0.434 |
|
| 2003 |
Robins C, Limbach PA. The use of nonpolar matrices for matrix-assisted laser desorption/ionization mass spectrometric analysis of high boiling crude oil fractions. Rapid Communications in Mass Spectrometry : Rcm. 17: 2839-45. PMID 14673835 DOI: 10.1002/Rcm.1275 |
0.789 |
|
| 2003 |
Berhane BT, Limbach PA. Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids. Journal of Mass Spectrometry : Jms. 38: 872-8. PMID 12938108 DOI: 10.1002/Jms.504 |
0.809 |
|
| 2003 |
Dominick WD, Berhane BT, Mecomber JS, Limbach PA. Covalent immobilization of proteases and nucleases to poly(methylmethacrylate). Analytical and Bioanalytical Chemistry. 376: 349-54. PMID 12728295 DOI: 10.1007/S00216-003-1923-0 |
0.775 |
|
| 2003 |
Berhane BT, Limbach PA. Functional microfabricated sample targets for matrix-assisted laser desorption/ionization mass spectrometry analysis of ribonucleic acids. Analytical Chemistry. 75: 1997-2003. PMID 12720332 DOI: 10.1021/Ac020710I |
0.805 |
|
| 2002 |
Chou CW, Limbach PA, Cole RB. Fragmentation pathway studies of oligonucleotides in matrix-assisted laser desorption/ionization mass spectrometry by charge tagging and H/D exchange. Journal of the American Society For Mass Spectrometry. 13: 1407-17. PMID 12484460 DOI: 10.1016/S1044-0305(02)00649-9 |
0.357 |
|
| 2002 |
Limbach PA, Meng Z. Integrating micromachined devices with modern mass spectrometry. The Analyst. 127: 693-700. PMID 12146896 DOI: 10.1039/B200143H |
0.371 |
|
| 2002 |
Macha SF, Limbach PA. Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry of polymers Current Opinion in Solid State and Materials Science. 6: 213-220. DOI: 10.1016/S1359-0286(02)00036-0 |
0.438 |
|
| 2002 |
Berhane BT, Mecomber J, Patteson KG, Limbach PA. Identifying post-transcriptional modifications in RNA by immobilized endonuclease digestion-MALDI-PSD-TOFMS Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 133-134. |
0.77 |
|
| 2002 |
Meng Z, Dominick WD, Mecomber J, Nieves D, Limbach PA. Development of an integrated polymer-based microfabricated device for the mass spectrometric characterization of proteins Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 183-184. |
0.799 |
|
| 2001 |
Polo LM, Limbach PA. Analysis of oligonucleotides by electrospray ionization mass spectrometry Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. PMID 18428821 DOI: 10.1002/0471142700.Nc1002S00 |
0.437 |
|
| 2001 |
Chou CW, Limbach PA. Analysis of oligonucleotides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. PMID 18428820 DOI: 10.1002/0471142700.Nc1001S00 |
0.469 |
|
| 2001 |
Macha SF, Limbach PA, Hanton SD, Owens KG. Silver cluster interferences in matrix-assisted laser desorption/ionization (MALDI) mass spectrometry of nonpolar polymers Journal of the American Society For Mass Spectrometry. 12: 732-743. PMID 11401164 DOI: 10.1016/S1044-0305(01)00225-2 |
0.399 |
|
| 2001 |
Patteson KG, Rodicio LP, Limbach PA. Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Research. 29: E49-9. PMID 11353094 DOI: 10.1093/Nar/29.10.E49 |
0.818 |
|
| 2001 |
Meng Z, Qi S, Soper SA, Limbach PA. Interfacing a polymer-based micromachined device to a nanoelectrospray ionization fourier transform ion cyclotron resonance mass spectrometer Analytical Chemistry. 73: 1286-1291. PMID 11305664 DOI: 10.1021/Ac000984A |
0.378 |
|
| 2001 |
Green-Church KB, Limbach PA, Freitas MA, Marshall AG. Gas-phase hydrogen/deuterium exchange of positively charged mononucleotides by use of Fourier-transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 12: 268-77. PMID 11281602 DOI: 10.1016/S1044-0305(00)00222-1 |
0.46 |
|
| 2000 |
Ragas JA, Simmons TA, Limbach PA. A comparative study on methods of optimal sample preparation for the analysis of oligonucleotides by matrix-assisted laser desorption/ionization mass spectrometry Analyst. 125: 575-581. PMID 10892014 DOI: 10.1039/A909709K |
0.392 |
|
| 2000 |
Breaux GA, Green-Church KB, France A, Limbach PA. Surfactant-aided, matrix-assisted laser desorption/ionization mass spectrometry of hydrophobic and hydrophilic peptides. Analytical Chemistry. 72: 1169-74. PMID 10740855 DOI: 10.1021/Ac9907282 |
0.387 |
|
| 2000 |
Macha SF, Limbach PA, Savickas PJ. Application of nonpolar matrices for the analysis of low molecular weight nonpolar synthetic polymers by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Journal of the American Society For Mass Spectrometry. 11: 731-737. DOI: 10.1016/S1044-0305(00)00137-9 |
0.449 |
|
| 1999 |
Vandell VE, Limbach PA. Polyamine co-matrices for matrix-assisted laser desorption/ionization mass spectrometry of oligonucleotides Rapid Communications in Mass Spectrometry. 13: 2014-2021. PMID 10510414 DOI: 10.1002/(Sici)1097-0231(19991030)13:20<2014::Aid-Rcm748>3.0.Co;2-C |
0.453 |
|
| 1999 |
Chou CW, Williams P, Limbach PA. Matrix influence on the formation of positively charged oligonucleotides in matrix-assisted laser desorption/ionization mass spectrometry International Journal of Mass Spectrometry. 193: 15-27. DOI: 10.1016/S1387-3806(99)00104-9 |
0.438 |
|
| 1999 |
Macha SF, McCarley TD, Limbach PA. Influence of ionization energy on charge-transfer ionization in matrix-assisted laser desorption/ionization mass spectrometry Analytica Chimica Acta. 397: 235-245. DOI: 10.1016/S0003-2670(99)00408-0 |
0.39 |
|
| 1998 |
Polo LM, Limbach PA. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the analysis of RNase H cleavage products Journal of Mass Spectrometry. 33: 1226-1231. PMID 9875524 DOI: 10.1002/(Sici)1096-9888(199812)33:12<1226::Aid-Jms739>3.0.Co;2-# |
0.447 |
|
| 1998 |
Vandell VE, Limbach PA. Electrospray ionization mass spectrometry of metalloporphyrins Journal of Mass Spectrometry. 33: 212-220. PMID 9538523 DOI: 10.1002/(Sici)1096-9888(199803)33:3<212::Aid-Jms619>3.0.Co;2-E |
0.38 |
|
| 1998 |
Green-Church KB, Limbach PA. Matrix-assisted laser desorption/ionization mass spectrometry of hydrophobic peptides Analytical Chemistry. 70: 5322-5325. DOI: 10.1021/Ac980667S |
0.376 |
|
| 1998 |
McCarley TD, McCarley RL, Limbach PA. Electron-Transfer Ionization in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Analytical Chemistry. 70: 4376-4379. DOI: 10.1021/Ac980527I |
0.351 |
|
| 1998 |
Simmons TA, Limbach PA. Influence of Co-matrix proton affinity on oligonucleotide ion stability in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Journal of the American Society For Mass Spectrometry. 9: 668-675. DOI: 10.1016/S1044-0305(98)00049-X |
0.352 |
|
| 1998 |
Limbach PA. Matrix-assisted laser desorption-lonization mass spectrometry: An overview Spectroscopy (Santa Monica). 13. |
0.346 |
|
| 1997 |
Polo LM, McCarley TD, Limbach PA. Chemical Sequencing of Phosphorothioate Oligonucleotides Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Analytical Chemistry. 69: 1107-1112. DOI: 10.1021/Ac960840P |
0.414 |
|
| 1997 |
Simmons TA, Limbach PA. The Use of a Co‐matrix for Improved Analysis of Oligonucleotides by Matrix‐assisted Laser Desorption/Ionization Time‐of‐flight Mass Spectrometry Rapid Communications in Mass Spectrometry. 11: 567-572. DOI: 10.1002/(Sici)1097-0231(199704)11:6<567::Aid-Rcm917>3.0.Co;2-O |
0.406 |
|
| 1997 |
Simmons TA, Limbach PA. The use of a co-matrix for improved analysis of oligonucleotides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Rapid Communications in Mass Spectrometry. 11: 567-572. DOI: 10.1002/(SICI)1097-0231(199704)11:6<567::AID-RCM917>3.0.CO;2-O |
0.331 |
|
| 1996 |
Limbach PA. Indirect mass spectrometric methods for characterizing and sequencing oligonucleotides Mass Spectrometry Reviews. 15: 297-336. DOI: 10.1002/(Sici)1098-2787(1996)15:5<297::Aid-Mas2>3.0.Co;2-D |
0.405 |
|
| 1995 |
Limbach PA, Crain PF, McCloskey JA. Molecular mass measurement of intact ribonucleic acids via electrospray ionization quadrupole mass spectrometry. Journal of the American Society For Mass Spectrometry. 6: 27-39. PMID 24222058 DOI: 10.1016/1044-0305(94)00086-F |
0.6 |
|
| 1995 |
Marto JA, Marshall AG, May MA, Limbach PA. Ion trajectories in an electrostatic ion guide for external ion source fourier transform ion cyclotron resonance mass spectrometry. Journal of the American Society For Mass Spectrometry. 6: 936-46. PMID 24214038 DOI: 10.1016/1044-0305(95)94194-X |
0.602 |
|
| 1995 |
Mangroo D, Limbach PA, McCloskey JA, RajBhandary UL. An anticodon sequence mutant of Escherichia coli initiator tRNA: possible importance of a newly acquired base modification next to the anticodon on its activity in initiation. Journal of Bacteriology. 177: 2858-62. PMID 7751297 DOI: 10.1128/Jb.177.10.2858-2862.1995 |
0.513 |
|
| 1995 |
Limbach PA, Crain PF, Pomerantz SC, McCloskey JA. Structures of posttranscriptionally modified nucleosides from RNA. Biochimie. 77: 135-8. PMID 7541251 DOI: 10.1016/0300-9084(96)88116-8 |
0.721 |
|
| 1995 |
Limbach PA, Crain PF, McCloskey JA. Characterization of oligonucleotides and nucleic acids by mass spectrometry. Current Opinion in Biotechnology. 6: 96-102. PMID 7534508 DOI: 10.1016/0958-1669(95)80015-8 |
0.629 |
|
| 1994 |
Limbach PA, Crain PF, McCloskey JA. Summary: the modified nucleosides of RNA. Nucleic Acids Research. 22: 2183-96. PMID 7518580 DOI: 10.1093/Nar/22.12.2183 |
0.537 |
|
| 1994 |
Grosshans PB, Chen R, Limbach PA, Marshall AG. Linear excitation and detection in Fourier transform ion cyclotron resonance mass spectrometry International Journal of Mass Spectrometry and Ion Processes. 139: 169-189. DOI: 10.1016/0168-1176(94)90034-5 |
0.473 |
|
| 1993 |
Limbach PA, Grosshans PB, Marshall AG. Experimental determination of the number of trapped ions, detection limit, and dynamic range in Fourier transform ion cyclotron resonance mass spectrometry Analytical Chemistry. 65: 135-140. DOI: 10.1021/Ac00050A008 |
0.483 |
|
| 1993 |
Limbach PA, Grosshans PB, Marshall AG. Harmonic enhancement of a detected ion cyclotron resonance signal by use of segmented detection electrodes International Journal of Mass Spectrometry and Ion Processes. 123: 41-47. DOI: 10.1016/0168-1176(93)87052-T |
0.449 |
|
| 1993 |
Limbach PA, Marshall AG, Wang M. An electrostatic ion guide for efficient transmission of low energy externally formed ions into a Fourier transform ion cyclotron resonance mass spectrometer International Journal of Mass Spectrometry and Ion Processes. 125: 135-143. DOI: 10.1016/0168-1176(93)80036-E |
0.433 |
|
| 1993 |
Limbach PA, Kim HS, Hill NC, Marshall AG. Fast neutral beam Fourier transform ion cyclotron resonance mass spectrometry for analysis of insulating and conductive materials Analytica Chimica Acta. 277: 31-39. DOI: 10.1016/0003-2670(93)85086-Y |
0.515 |
|
| 1991 |
Hill NC, Limbach PA, Shomo RE, Marshall AG, Appelhans AD, Delmore JE. Fast neutral beam ion source coupled to a Fourier transform ion cyclotron resonance mass spectrometer Review of Scientific Instruments. 62: 2612-2617. DOI: 10.1063/1.1142239 |
0.498 |
|
| 1991 |
Limbach PA, Schweikhard L, Cowen KA, McDermott MT, Marshall AG, Coe JV. Observation of the doubly charged, gas-phase fullerene anions C602- and C702- Journal of the American Chemical Society. 113: 6795-6798. DOI: 10.1021/Ja00018A012 |
0.38 |
|
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