| Year |
Citation |
Score |
| 2023 |
Mudbhari S, Lofgren L, Appidi MR, Vilgalys R, Hettich RL, Abraham P. Decoding the chemical language of fungi: genome mining and untargeted metabolomics uncover terpene chemical diversity. Biorxiv : the Preprint Server For Biology. PMID 38045323 DOI: 10.1101/2023.11.20.567897 |
0.302 |
|
| 2023 |
Swenie RA, Looney BP, Ke YH, Alejandro Rojas J, Cubeta MA, Langer GJ, Vilgalys R, Brandon Matheny P. PacBio high-throughput multi-locus sequencing reveals high genetic diversity in mushroom-forming fungi. Molecular Ecology Resources. PMID 37902171 DOI: 10.1111/1755-0998.13885 |
0.308 |
|
| 2023 |
Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, ... ... Vilgalys R, et al. Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11. PMID 37513002 DOI: 10.3390/microorganisms11071830 |
0.802 |
|
| 2023 |
Ke YH, Branco S, Bazzicalupo AL, Nguyen NH, Liao HL, Kennedy P, Bruns TD, Kuo A, LaButti K, Barry K, Grigoriev I, Vilgalys R. Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi. Genetics. PMID 37070772 DOI: 10.1093/genetics/iyad069 |
0.799 |
|
| 2022 |
Gryganskyi AP, Nie Y, Hajek AE, Hodge KT, Liu XY, Aadland K, Voigt K, Anishchenko IM, Kutovenko VB, Kava L, Vuek A, Vilgalys R, Huang B, Stajich JE. The Early Terrestrial Fungal Lineage of -Transition from Saprotroph to Parasitic Lifestyle. Journal of Fungi (Basel, Switzerland). 8. PMID 36012777 DOI: 10.3390/jof8080789 |
0.372 |
|
| 2022 |
Barge EG, Leopold DR, Rojas A, Vilgalys R, Busby PE. Phylogenetic conservatism of mycoparasitism and its contribution to pathogen antagonism. Molecular Ecology. PMID 35313045 DOI: 10.1111/mec.16436 |
0.369 |
|
| 2021 |
Liao HL, Bonito G, Hameed K, Wu SH, Chen KH, Labbé J, Schadt CW, Tuskan GA, Martin F, Kuo A, Barry K, Grigoriev IV, Vilgalys R. Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi. Frontiers in Microbiology. 12: 680267. PMID 34803937 DOI: 10.3389/fmicb.2021.680267 |
0.607 |
|
| 2021 |
Vélez JM, Morris RM, Vilgalys R, Labbé J, Schadt CW. Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives. Plos One. 16: e0231367. PMID 33406078 DOI: 10.1371/journal.pone.0231367 |
0.408 |
|
| 2020 |
Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, ... ... Vilgalys R, et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications. 11: 5125. PMID 33046698 DOI: 10.1038/s41467-020-18795-w |
0.782 |
|
| 2020 |
Bazzicalupo AL, Ruytinx J, Ke YH, Coninx L, Colpaert JV, Nguyen NH, Vilgalys R, Branco S. Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation. Molecular Ecology. PMID 32866320 DOI: 10.1111/Mec.15618 |
0.797 |
|
| 2020 |
Peng J, Rojas JA, Sang H, Proffer T, Outwater C, Vilgalys R, Sundin GW. Draft genome sequence resource for Blumeriella jaapii, the cherry leaf spot pathogen. Phytopathology. PMID 32338196 DOI: 10.1094/Phyto-03-20-0082-A |
0.323 |
|
| 2020 |
Czaplicki LM, Redfern LK, Cooper EM, Ferguson PL, Vilgalys R, Gunsch CK. Investigating the mycobiome of the Holcomb Creosote Superfund Site. Chemosphere. 252: 126208. PMID 32229362 DOI: 10.1016/J.Chemosphere.2020.126208 |
0.337 |
|
| 2020 |
Zhang K, Bonito G, Hsu C, Hameed K, Vilgalys R, Liao H. Mortierella elongata Increases Plant Biomass among Non-Leguminous Crop Species Agronomy. 10: 754. DOI: 10.3390/Agronomy10050754 |
0.632 |
|
| 2020 |
Steidinger BS, Bhatnagar JM, Vilgalys R, Taylor JW, Qin C, Zhu K, Bruns TD, Peay KG. Ectomycorrhizal fungal diversity predicted to substantially decline due to climate changes in North American Pinaceae forests Journal of Biogeography. 47: 772-782. DOI: 10.1111/Jbi.13802 |
0.457 |
|
| 2019 |
Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/Fmicb.2019.02163 |
0.773 |
|
| 2019 |
Millet LJ, Aufrecht J, Labbé J, Uehling J, Vilgalys R, Estes ML, Miquel Guennoc C, Deveau A, Olsson S, Bonito G, Doktycz MJ, Retterer ST. Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal Biology and Biotechnology. 6: 1. PMID 31198578 DOI: 10.1186/s40694-019-0071-z |
0.763 |
|
| 2019 |
Bonito G, Benucci GMN, Hameed K, Weighill D, Jones P, Chen KH, Jacobson D, Schadt C, Vilgalys R. Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype. Frontiers in Microbiology. 10: 481. PMID 30984119 DOI: 10.3389/Fmicb.2019.00481 |
0.645 |
|
| 2019 |
Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbe JL, Tuskan G, Martin FM, Grigoriev IV, Vilgalys R. Fungal endophytes of Populus trichocarpa alter host phenotype, gene expression and rhizobiome composition. Molecular Plant-Microbe Interactions : Mpmi. PMID 30699306 DOI: 10.1094/Mpmi-05-18-0133-R |
0.643 |
|
| 2018 |
Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R. Phylogenetic taxon definitions for and . Ima Fungus. 9: 291-298. PMID 30622884 DOI: 10.5598/imafungus.2018.09.02.05 |
0.783 |
|
| 2018 |
Policelli N, Bruns TD, Vilgalys R, Nuñez MA. Suilloid fungi as global drivers of pine invasions. The New Phytologist. PMID 30586169 DOI: 10.1111/Nph.15660 |
0.388 |
|
| 2018 |
Misztal PK, Lymperopoulou DS, Adams R, Scott R, Lindow S, Bruns T, Taylor JW, Uehling J, Bonito G, Vilgalys R, Goldstein AH. Emission Factors of Microbial Volatile Organic Compounds from Environmental Bacteria and Fungi. Environmental Science & Technology. PMID 29947506 DOI: 10.1021/Acs.Est.8B00806 |
0.782 |
|
| 2018 |
Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, ... ... Vilgalys R, et al. Phylogenetic and Phylogenomic Definition of Species. G3 (Bethesda, Md.). PMID 29674435 DOI: 10.1534/G3.118.200235 |
0.819 |
|
| 2018 |
Cregger MA, Veach AM, Yang ZK, Crouch MJ, Vilgalys R, Tuskan GA, Schadt CW. The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome. Microbiome. 6: 31. PMID 29433554 DOI: 10.1186/S40168-018-0413-8 |
0.38 |
|
| 2018 |
Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Erratum to “Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees” [Fungal Ecol. 27 (Part A) (June 2017) 78–86] Fungal Ecology. 33: 143. DOI: 10.1016/J.Funeco.2017.12.004 |
0.609 |
|
| 2017 |
Smith ME, Henkel TW, Williams GC, Aime MC, Fremier AK, Vilgalys R. Investigating niche partitioning of ectomycorrhizal fungi in specialized rooting zones of the monodominant leguminous tree Dicymbe corymbosa. The New Phytologist. PMID 28493414 DOI: 10.1111/Nph.14570 |
0.806 |
|
| 2017 |
Rosenthal LM, Larsson KH, Branco S, Chung JA, Glassman SI, Liao HL, Peay KG, Smith DP, Talbot JM, Taylor JW, Vellinga EC, Vilgalys R, Bruns TD. Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal. Mycologia. 109: 115-127. PMID 28402791 DOI: 10.1080/00275514.2017.1281677 |
0.623 |
|
| 2017 |
Bonito G, Hameed K, Toome-Heller M, Healy R, Reid C, Liao HL, Aime MC, Schadt C, Vilgalys R. Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome. Mycologia. 109: 18-26. PMID 28402786 DOI: 10.1080/00275514.2016.1271689 |
0.784 |
|
| 2017 |
Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, ... ... Vilgalys R, et al. Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology. PMID 28076891 DOI: 10.1111/1462-2920.13669 |
0.643 |
|
| 2017 |
Johansen RB, Johnston P, Mieczkowski P, Perry GL, Robeson MS, Vilgalys R, Burns BR. Scattered far and wide: A broadly distributed temperate dune grass finds familiar fungal root associates in its invasive range Soil Biology and Biochemistry. 112: 177-190. DOI: 10.1016/J.Soilbio.2017.05.007 |
0.412 |
|
| 2017 |
Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees Fungal Ecology. 27: 78-86. DOI: 10.1016/J.Funeco.2017.03.001 |
0.638 |
|
| 2016 |
Czaplicki LM, Cooper E, Ferguson PL, Stapleton HM, Vilgalys R, Gunsch CK. A New Perspective on Sustainable Soil Remediation-Case Study Suggests Novel Fungal Genera Could Facilitate in situ Biodegradation of Hazardous Contaminants. Remediation (New York, N.Y.). 26: 59-72. PMID 27917031 DOI: 10.1002/Rem.21458 |
0.312 |
|
| 2016 |
Li Z, Yao Q, Dearth SP, Entler MR, Castro Gonzalez HF, Uehling JK, Vilgalys RJ, Hurst GB, Campagna SR, Labbé JL, Pan C. Integrated Proteomics and Metabolomics Suggests Symbiotic Metabolism and Multimodal Regulation in a Fungal-Endobacterial System. Environmental Microbiology. PMID 27871150 DOI: 10.1111/1462-2920.13605 |
0.783 |
|
| 2016 |
Branco S, Bi K, Liao HL, Gladieux P, Badouin H, Ellison CE, Nguyen NH, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes. Molecular Ecology. PMID 27761941 DOI: 10.1111/Mec.13892 |
0.523 |
|
| 2016 |
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, ... Vilgalys R, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042 |
0.812 |
|
| 2016 |
Liao HL, Chen Y, Vilgalys R. Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus. Plos Genetics. 12: e1006348. PMID 27736883 DOI: 10.1371/Journal.Pgen.1006348 |
0.449 |
|
| 2016 |
Gónzalez D, Rodriguez-Carres M, Boekhout T, Stalpers J, Kuramae EE, Nakatani AK, Vilgalys R, Cubeta MA. Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales. Fungal Biology. 120: 603-19. PMID 27020160 DOI: 10.1016/J.Funbio.2016.01.012 |
0.45 |
|
| 2016 |
Henk DA, Vilgalys R. Genetic Structure within Septobasidium Colonies Suggests Outcrossing and Frequent Non Self-Fusion Fungal Genomics & Biology. 6. DOI: 10.4172/2165-8056.1000143 |
0.653 |
|
| 2016 |
Johansen RB, Johnston P, Mieczkowski P, Perry GLW, Robeson MS, Burns BR, Vilgalys R. A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities Fungal Ecology. 23: 141-155. DOI: 10.1016/J.Funeco.2016.08.003 |
0.44 |
|
| 2016 |
Bonito G, Hameed K, Ventura R, Krishnan J, Schadt CW, Vilgalys R. Isolating a functionally relevant guild of fungi from the root microbiome of Populus Fungal Ecology. 22: 35-42. DOI: 10.1016/J.Funeco.2016.04.007 |
0.675 |
|
| 2015 |
Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD. Genetic isolation between two recently diverged populations of a symbiotic fungus. Molecular Ecology. 24: 2747-58. PMID 25728665 DOI: 10.1111/Mec.13132 |
0.566 |
|
| 2015 |
Glassman SI, Peay KG, Talbot JM, Smith DP, Chung JA, Taylor JW, Vilgalys R, Bruns TD. A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern. The New Phytologist. 205: 1619-31. PMID 25557275 DOI: 10.1111/Nph.13240 |
0.546 |
|
| 2015 |
Kuske CR, Hesse CN, Challacombe JF, Cullen D, Herr JR, Mueller RC, Tsang A, Vilgalys R. Prospects and challenges for fungal metatranscriptomics of complex communities Fungal Ecology. 14: 133-137. DOI: 10.1016/J.Funeco.2014.12.005 |
0.37 |
|
| 2014 |
Cubeta MA, Thomas E, Dean RA, Jabaji S, Neate SM, Tavantzis S, Toda T, Vilgalys R, Bharathan N, Fedorova-Abrams N, Pakala SB, Pakala SM, Zafar N, Joardar V, Losada L, et al. Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP. Genome Announcements. 2. PMID 25359908 DOI: 10.1128/Genomea.01072-14 |
0.361 |
|
| 2014 |
Liao HL, Chen Y, Bruns TD, Peay KG, Taylor JW, Branco S, Talbot JM, Vilgalys R. Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ. Environmental Microbiology. 16: 3730-42. PMID 25186788 DOI: 10.1111/1462-2920.12619 |
0.538 |
|
| 2014 |
Bonito G, Reynolds H, Robeson MS, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology. 23: 3356-70. PMID 24894495 DOI: 10.1111/Mec.12821 |
0.8 |
|
| 2014 |
Talbot JM, Bruns TD, Taylor JW, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Liao HL, Smith ME, Peay KG. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6341-6. PMID 24733885 DOI: 10.1073/Pnas.1402584111 |
0.494 |
|
| 2014 |
Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA. Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3. Fems Microbiology Letters. 352: 165-73. PMID 24461055 DOI: 10.1111/1574-6968.12387 |
0.367 |
|
| 2014 |
Hofstetter V, Redhead SA, Kauff F, Moncalvo JM, Matheny PB, Vilgalys R. Taxonomic revision and examination of ecological transitions of the Lyophyllaceae (Basidiomycota, Agaricales) based on a multigene phylogeny Cryptogamie, Mycologie. 35: 399-425. DOI: 10.7872/Crym.V35.Iss4.2014.399 |
0.684 |
|
| 2014 |
Lodge DJ, Padamsee M, Matheny PB, Aime MC, Cantrell SA, Boertmann D, Kovalenko A, Vizzini A, Dentinger BTM, Kirk PM, Ainsworth AM, Moncalvo JM, Vilgalys R, Larsson E, Lücking R, et al. Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales) Fungal Diversity. 64: 1-99. DOI: 10.1007/S13225-013-0259-0 |
0.755 |
|
| 2013 |
Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW. A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. Plos One. 8: e76382. PMID 24146861 DOI: 10.1371/Journal.Pone.0076382 |
0.669 |
|
| 2013 |
Benítez MS, Hersh MH, Vilgalys R, Clark JS. Pathogen regulation of plant diversity via effective specialization. Trends in Ecology & Evolution. 28: 705-11. PMID 24091206 DOI: 10.1016/J.Tree.2013.09.005 |
0.812 |
|
| 2013 |
Gryganskyi AP, Humber RA, Smith ME, Hodge K, Huang B, Voigt K, Vilgalys R. Phylogenetic lineages in Entomophthoromycota. Persoonia. 30: 94-105. PMID 24027349 DOI: 10.3767/003158513X666330 |
0.438 |
|
| 2013 |
Gryganskyi AP, Humber RA, Stajich JE, Mullens B, Anishchenko IM, Vilgalys R. Sequential utilization of hosts from different fly families by genetically distinct, sympatric populations within the Entomophthora muscae species complex. Plos One. 8: e71168. PMID 23951101 DOI: 10.1371/Journal.Pone.0071168 |
0.408 |
|
| 2013 |
Weber CF, Vilgalys R, Kuske CR. Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon. Frontiers in Microbiology. 4: 78. PMID 23641237 DOI: 10.3389/Fmicb.2013.00078 |
0.344 |
|
| 2013 |
Smith ME, Henkel TW, Uehling JK, Fremier AK, Clarke HD, Vilgalys R. The ectomycorrhizal fungal community in a neotropical forest dominated by the endemic dipterocarp Pakaraimaea dipterocarpacea. Plos One. 8: e55160. PMID 23383090 DOI: 10.1371/Journal.Pone.0055160 |
0.829 |
|
| 2013 |
Bonito G, Smith ME, Nowak M, Healy RA, Guevara G, Cázares E, Kinoshita A, Nouhra ER, DomÃnguez LS, Tedersoo L, Murat C, Wang Y, Moreno BA, Pfister DH, Nara K, ... ... Vilgalys R, et al. Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified southern hemisphere sister lineage. Plos One. 8: e52765. PMID 23300990 DOI: 10.1371/Journal.Pone.0052765 |
0.725 |
|
| 2013 |
Healy RA, Smith ME, Bonito GM, Pfister DH, Ge ZW, Guevara GG, Williams G, Stafford K, Kumar L, Lee T, Hobart C, Trappe J, Vilgalys R, McLaughlin DJ. High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales. Molecular Ecology. 22: 1717-32. PMID 23205556 DOI: 10.1111/Mec.12135 |
0.784 |
|
| 2013 |
Husbands DR, Henkel TW, Bonito G, Vilgalys R, Smith ME. New species of Xerocomus (Boletales) from the Guiana Shield, with notes on their mycorrhizal status and fruiting occurrence. Mycologia. 105: 422-35. PMID 23080024 DOI: 10.3852/12-146 |
0.83 |
|
| 2013 |
Guevara G, Bonito G, Trappe JM, Cázares E, Williams G, Healy RA, Schadt C, Vilgalys R. New North American truffles (Tuber spp.) and their ectomycorrhizal associations. Mycologia. 105: 194-209. PMID 22962353 DOI: 10.3852/12-087 |
0.72 |
|
| 2013 |
Golonka AM, Vilgalys R. Nectar inhabiting yeasts in Virginian populations of Silene latifolia (Caryophyllaceae) and coflowering species American Midland Naturalist. 169: 235-258. DOI: 10.1674/0003-0031-169.2.235 |
0.462 |
|
| 2013 |
Talbot JM, Bruns TD, Smith DP, Branco S, Glassman SI, Erlandson S, Vilgalys R, Peay KG. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition Soil Biology and Biochemistry. 57: 282-291. DOI: 10.1016/J.Soilbio.2012.10.004 |
0.307 |
|
| 2012 |
Uehling JK, Henkel TW, Aime MC, Vilgalys R, Smith ME. New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa. Fungal Biology. 116: 1263-74. PMID 23245619 DOI: 10.1016/J.Funbio.2012.09.004 |
0.815 |
|
| 2012 |
Gryganskyi AP, Humber RA, Smith ME, Miadlikowska J, Miadlikovska J, Wu S, Voigt K, Walther G, Anishchenko IM, Vilgalys R. Molecular phylogeny of the Entomophthoromycota. Molecular Phylogenetics and Evolution. 65: 682-94. PMID 22877646 DOI: 10.1016/J.Ympev.2012.07.026 |
0.52 |
|
| 2012 |
Uehling JK, Henkel TW, Vilgalys R, Smith ME. Membranomyces species are common ectomycorrhizal symbionts in Northern Hemisphere forests. Mycorrhiza. 22: 577-81. PMID 22847636 DOI: 10.1007/S00572-012-0457-8 |
0.833 |
|
| 2012 |
Hersh MH, Vilgalys R, Clark JS. Evaluating the impacts of multiple generalist fungal pathogens on temperate tree seedling survival. Ecology. 93: 511-20. PMID 22624206 DOI: 10.1890/11-0598.1 |
0.821 |
|
| 2012 |
Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Hengartner NW, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR. Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide. Environmental Microbiology. 14: 1145-58. PMID 22264231 DOI: 10.1111/J.1462-2920.2011.02695.X |
0.392 |
|
| 2012 |
Uehling JK, Henkel TW, Aime MC, Vilgalys R, Smith ME. New species of Clavulina (Cantharellales, Basidiomycota) with resupinate and effused basidiomata from the Guiana Shield. Mycologia. 104: 547-56. PMID 22067306 DOI: 10.3852/11-130 |
0.814 |
|
| 2012 |
Thaler AD, Van Dover CL, Vilgalys R. Ascomycete phylotypes recovered from a Gulf of Mexico methane seep are identical to an uncultured deep-sea fungal clade from the Pacific Fungal Ecology. 5: 270-273. DOI: 10.1016/J.Funeco.2011.07.002 |
0.426 |
|
| 2012 |
Bonito G, Smith ME, Brenneman T, Vilgalys R. Assessing ectomycorrhizal fungal spore banks of truffle producing soils with pecan seedling trap-plants Plant and Soil. 356: 357-366. DOI: 10.1007/S11104-012-1127-5 |
0.641 |
|
| 2012 |
Henkel TW, Aime MC, Chin MML, Miller SL, Vilgalys R, Smith ME. Ectomycorrhizal fungal sporocarp diversity and discovery of new taxa in Dicymbe monodominant forests of the Guiana Shield Biodiversity and Conservation. 21: 2195-2220. DOI: 10.1007/S10531-011-0166-1 |
0.816 |
|
| 2011 |
Weber CF, Zak DR, Hungate BA, Jackson RB, Vilgalys R, Evans RD, Schadt CW, Megonigal JP, Kuske CR. Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems. Environmental Microbiology. 13: 2778-93. PMID 21883796 DOI: 10.1111/J.1462-2920.2011.02548.X |
0.395 |
|
| 2011 |
Smith ME, Henkel TW, Catherine Aime M, Fremier AK, Vilgalys R. Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest. The New Phytologist. 192: 699-712. PMID 21883231 DOI: 10.1111/J.1469-8137.2011.03844.X |
0.796 |
|
| 2011 |
Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/Aem.05255-11 |
0.412 |
|
| 2011 |
Porter TM, Martin W, James TY, Longcore JE, Gleason FH, Adler PH, Letcher PM, Vilgalys R. Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA. Fungal Biology. 115: 381-92. PMID 21530920 DOI: 10.1016/J.Funbio.2011.02.004 |
0.766 |
|
| 2011 |
Bonito G, Brenneman T, Vilgalys R. Ectomycorrhizal fungal diversity in orchards of cultivated pecan (Carya illinoinensis; Juglandaceae). Mycorrhiza. 21: 601-12. PMID 21369784 DOI: 10.1007/S00572-011-0368-0 |
0.716 |
|
| 2011 |
Baroni TJ, Hofstetter V, Largent DL, Vilgalys R. Entocybe is proposed as a new genus in the Entolomataceae (Agaricomycetes, Basidiomycota) based on morphological and molecular evidence North American Fungi. 6: 1-19. DOI: 10.2509/Naf2011.006.012 |
0.438 |
|
| 2011 |
Bonito G, Trappe JM, Donovan S, Vilgalys R. The Asian black truffle Tuber indicum can form ectomycorrhizas with North American host plants and complete its life cycle in non-native soils Fungal Ecology. 4: 83-93. DOI: 10.1016/J.Funeco.2010.08.003 |
0.65 |
|
| 2010 |
Gryganskyi AP, Lee SC, Litvintseva AP, Smith ME, Bonito G, Porter TM, Anishchenko IM, Heitman J, Vilgalys R. Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex. Plos One. 5: e15273. PMID 21151560 DOI: 10.1371/Journal.Pone.0015273 |
0.64 |
|
| 2010 |
Bonito GM, Gryganskyi AP, Trappe JM, Vilgalys R. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology. 19: 4994-5008. PMID 21040049 DOI: 10.1111/J.1365-294X.2010.04855.X |
0.72 |
|
| 2010 |
Bonito G, Trappe JM, Rawlinson P, Vilgalys R. Improved resolution of major clades within Tuber and taxonomy of species within the Tuber gibbosum complex. Mycologia. 102: 1042-57. PMID 20943504 DOI: 10.3852/09-213 |
0.69 |
|
| 2010 |
Bonito G, Isikhuemhen OS, Vilgalys R. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresource Technology. 101: 1021-7. PMID 19766485 DOI: 10.1016/J.Biortech.2009.08.109 |
0.649 |
|
| 2009 |
McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R. The search for the fungal tree of life. Trends in Microbiology. 17: 488-97. PMID 19782570 DOI: 10.1016/J.Tim.2009.08.001 |
0.78 |
|
| 2009 |
James TY, Litvintseva AP, Vilgalys R, Morgan JA, Taylor JW, Fisher MC, Berger L, Weldon C, du Preez L, Longcore JE. Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations. Plos Pathogens. 5: e1000458. PMID 19478871 DOI: 10.1371/Journal.Ppat.1000458 |
0.741 |
|
| 2009 |
Parrent JL, Vilgalys R. Expression of genes involved in symbiotic carbon and nitrogen transport in Pinus taeda mycorrhizal roots exposed to CO2 enrichment and nitrogen fertilization. Mycorrhiza. 19: 469-79. PMID 19415342 DOI: 10.1007/S00572-009-0250-5 |
0.77 |
|
| 2009 |
Findley K, Rodriguez-Carres M, Metin B, Kroiss J, Fonseca A, Vilgalys R, Heitman J. Phylogeny and phenotypic characterization of pathogenic Cryptococcus species and closely related saprobic taxa in the Tremellales. Eukaryotic Cell. 8: 353-61. PMID 19151324 DOI: 10.1128/Ec.00373-08 |
0.507 |
|
| 2008 |
Hartman WH, Richardson CJ, Vilgalys R, Bruland GL. Environmental and anthropogenic controls over bacterial communities in wetland soils. Proceedings of the National Academy of Sciences of the United States of America. 105: 17842-7. PMID 19004771 DOI: 10.1073/Pnas.0808254105 |
0.342 |
|
| 2008 |
Porter TM, Schadt CW, Rizvi L, Martin AP, Schmidt SK, Scott-Denton L, Vilgalys R, Moncalvo JM. Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution. 46: 635-44. PMID 18032071 DOI: 10.1016/J.Ympev.2007.10.002 |
0.424 |
|
| 2008 |
GRÄser Y, Fari ME, Vilgalys R, Kuijpers AFA, Hoog GSD, Presber W, Tietz HJ. Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region: Phylogeny and taxonomy of the family Arthrodermataceae Medical Mycology. 37: 105-114. DOI: 10.1111/J.1365-280X.1999.00203.X |
0.302 |
|
| 2007 |
Henk DA, Vilgalys R. Molecular phylogeny suggests a single origin of insect symbiosis in the Pucciniomycetes with support for some relationships within the genus Septobasidium. American Journal of Botany. 94: 1515-26. PMID 21636518 DOI: 10.3732/Ajb.94.9.1515 |
0.775 |
|
| 2007 |
Ceresini PC, Shew HD, James TY, Vilgalys RJ, Cubeta MA. Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. Bmc Evolutionary Biology. 7: 163. PMID 17854492 DOI: 10.1186/1471-2148-7-163 |
0.659 |
|
| 2007 |
Parrent JL, Vilgalys R. Biomass and compositional responses of ectomycorrhizal fungal hyphae to elevated CO2 and nitrogen fertilization. The New Phytologist. 176: 164-74. PMID 17803647 DOI: 10.1111/J.1469-8137.2007.02155.X |
0.791 |
|
| 2007 |
Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R. Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia. 99: 185-206. PMID 17682771 DOI: 10.3852/Mycologia.99.2.185 |
0.813 |
|
| 2007 |
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, ... ... Vilgalys R, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/J.Mycres.2007.03.004 |
0.8 |
|
| 2006 |
Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, ... ... Vilgalys R, et al. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia. 98: 982-95. PMID 17486974 DOI: 10.3852/Mycologia.98.6.982 |
0.809 |
|
| 2006 |
Moncalvo JM, Nilsson RH, Koster B, Dunham SM, Bernauer T, Matheny PB, Porter TM, Margaritescu S, Weiss M, Garnica S, Danell E, Langer G, Langer E, Larsson E, Larsson KH, ... Vilgalys R, et al. The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia. 98: 937-48. PMID 17486970 DOI: 10.3852/Mycologia.98.6.937 |
0.675 |
|
| 2006 |
James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia. 98: 860-71. PMID 17486963 DOI: 10.3852/Mycologia.98.6.860 |
0.749 |
|
| 2006 |
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... ... Vilgalys R, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110 |
0.795 |
|
| 2006 |
Parrent JL, Morris WF, Vilgalys R. CO2-enrichment and nutrient availability alter ectomycorrhizal fungal communities. Ecology. 87: 2278-87. PMID 16995628 DOI: 10.1890/0012-9658(2006)87[2278:Canaae]2.0.Co;2 |
0.786 |
|
| 2006 |
Yahr R, Vilgalys R, DePriest PT. Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis. The New Phytologist. 171: 847-60. PMID 16918555 DOI: 10.1111/J.1469-8137.2006.01792.X |
0.734 |
|
| 2006 |
González D, Cubeta MA, Vilgalys R. Phylogenetic utility of indels within ribosomal DNA and beta-tubulin sequences from fungi in the Rhizoctonia solani species complex. Molecular Phylogenetics and Evolution. 40: 459-70. PMID 16647865 DOI: 10.1016/J.Ympev.2006.03.022 |
0.468 |
|
| 2006 |
James TY, Srivilai P, Kües U, Vilgalys R. Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function. Genetics. 172: 1877-91. PMID 16461425 DOI: 10.1534/Genetics.105.051128 |
0.689 |
|
| 2006 |
Litvintseva AP, Thakur R, Vilgalys R, Mitchell TG. Multilocus sequence typing reveals three genetic subpopulations of Cryptococcus neoformans var. grubii (serotype A), including a unique population in Botswana. Genetics. 172: 2223-38. PMID 16322524 DOI: 10.1534/Genetics.105.046672 |
0.346 |
|
| 2005 |
Aime MC, Vilgalys R, Miller OK. The Crepidotaceae (Basidiomycota, Agaricales): phylogeny and taxonomy of the genera and revision of the family based on molecular evidence. American Journal of Botany. 92: 74-82. PMID 21652386 DOI: 10.3732/Ajb.92.1.74 |
0.75 |
|
| 2005 |
O'Brien HE, Parrent JL, Jackson JA, Moncalvo JM, Vilgalys R. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology. 71: 5544-50. PMID 16151147 DOI: 10.1128/Aem.71.9.5544-5550.2005 |
0.813 |
|
| 2005 |
Didukh M, Vilgalys R, Wasser SP, Isikhuemhen OS, Nevo E. Notes on Agaricus section Duploannulati using molecular and morphological data. Mycological Research. 109: 729-40. PMID 16080396 DOI: 10.1017/S0953756205002443 |
0.469 |
|
| 2005 |
Fierer N, Jackson JA, Vilgalys R, Jackson RB. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Applied and Environmental Microbiology. 71: 4117-20. PMID 16000830 DOI: 10.1128/Aem.71.7.4117-4120.2005 |
0.576 |
|
| 2005 |
Litvintseva AP, Kestenbaum L, Vilgalys R, Mitchell TG. Comparative analysis of environmental and clinical populations of Cryptococcus neoformans. Journal of Clinical Microbiology. 43: 556-64. PMID 15695645 DOI: 10.1128/Jcm.43.2.556-564.2005 |
0.308 |
|
| 2004 |
Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, ... ... Vilgalys R, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446 |
0.811 |
|
| 2004 |
Peintner U, Moncalvo JM, Vilgalys R. Toward a better understanding of the infrageneric relationships in Cortinarius (Agaricales, Basidiomycota). Mycologia. 96: 1042-58. PMID 21148925 DOI: 10.1080/15572536.2005.11832904 |
0.499 |
|
| 2004 |
Diezmann S, Cox CJ, Schönian G, Vilgalys RJ, Mitchell TG. Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. Journal of Clinical Microbiology. 42: 5624-35. PMID 15583292 DOI: 10.1128/Jcm.42.12.5624-5635.2004 |
0.402 |
|
| 2004 |
Yahr R, Vilgalys R, Depriest PT. Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens. Molecular Ecology. 13: 3367-78. PMID 15487996 DOI: 10.1111/J.1365-294X.2004.02350.X |
0.732 |
|
| 2004 |
James TY, Liou SR, Vilgalys R. The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor. Fungal Genetics and Biology : Fg & B. 41: 813-25. PMID 15219565 DOI: 10.1016/J.Fgb.2004.04.005 |
0.774 |
|
| 2004 |
Zervakis GI, Moncalvo JM, Vilgalys R. Molecular phylogeny, biogeography and speciation of the mushroom species Pleurotus cystidiosus and allied taxa. Microbiology (Reading, England). 150: 715-26. PMID 14993321 DOI: 10.1099/Mic.0.26673-0 |
0.494 |
|
| 2004 |
James TY, Kües U, Rehner SA, Vilgalys R. Evolution of the gene encoding mitochondrial intermediate peptidase and its cosegregation with the A mating-type locus of mushroom fungi. Fungal Genetics and Biology : Fg & B. 41: 381-90. PMID 14761798 DOI: 10.1016/J.Fgb.2003.11.008 |
0.738 |
|
| 2003 |
Davis EC, Franklin JB, Shaw AJ, Vilgalys R. Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. American Journal of Botany. 90: 1661-7. PMID 21653342 DOI: 10.3732/Ajb.90.11.1661 |
0.482 |
|
| 2003 |
Pringle A, Moncalvo JM, Vilgalys R. Revisiting the rDNA sequence diversity of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica. Mycorrhiza. 13: 227-31. PMID 12898351 DOI: 10.1007/S00572-003-0249-2 |
0.628 |
|
| 2003 |
Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ, Longcore JE. Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology. 12: 395-403. PMID 12535090 DOI: 10.1046/J.1365-294X.2003.01732.X |
0.701 |
|
| 2002 |
Peintner U, Horak E, Moser MM, Vilgalys R. Phylogeny of Rozites, Cuphocybe and Rapacea inferred from ITS and LSU rDNA sequences. Mycologia. 94: 620-9. PMID 21156535 DOI: 10.1080/15572536.2003.11833190 |
0.505 |
|
| 2002 |
Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Catherine Aime M, Hofstetter V, Verduin SJ, Larsson E, Baroni TJ, Greg Thorn R, Jacobsson S, Clémençon H, Miller OK. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution. 23: 357-400. PMID 12099793 DOI: 10.1016/S1055-7903(02)00027-1 |
0.826 |
|
| 2002 |
Xu J, Luo G, Vilgalys RJ, Brandt ME, Mitchell TG. Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology (Reading, England). 148: 203-12. PMID 11782512 DOI: 10.1099/00221287-148-1-203 |
0.387 |
|
| 2002 |
Hofstetter V, Clémençon H, Vilgalys R, Moncalvo JM. Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycota) based on nuclear and mitochondrial rDNA sequences Mycological Research. 106: 1043-1059. DOI: 10.1017/S095375620200641X |
0.419 |
|
| 2002 |
Henkel TW, Terborgh J, Vilgalys RJ. Ectomycorrhizal fungi and their leguminous hosts in the Pakaraima Mountains of Guyana Mycological Research. 106: 515-531. DOI: 10.1017/S0953756202005919 |
0.765 |
|
| 2002 |
Redhead SA, Lutzoni F, Moncalvo JM, Vilgalys R. Phylogeny of agarics: Partial systematics solutions for core Omphalinoid genera in the Agaricales (Euagarics) Mycotaxon. 83: 19-57. |
0.498 |
|
| 2001 |
Peintner U, Bougher NL, Castellano MA, Moncalvo JM, Moser MM, Trappe JM, Vilgalys R. Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). American Journal of Botany. 88: 2168-79. PMID 21669649 DOI: 10.2307/3558378 |
0.443 |
|
| 2001 |
Kües U, James TY, Vilgalys R, Challen MP. The chromosomal region containing pab-1, mip, and the A mating type locus of the secondarily homothallic homobasidiomycete Coprinus bilanatus. Current Genetics. 39: 16-24. PMID 11318102 DOI: 10.1007/S002940000176 |
0.682 |
|
| 2001 |
James TY, Vilgalys R. Abundance and diversity of Schizophyllum commune spore clouds in the Caribbean detected by selective sampling. Molecular Ecology. 10: 471-9. PMID 11298961 DOI: 10.1046/J.1365-294X.2001.01224.X |
0.691 |
|
| 2001 |
Xu J, Onyewu C, Yoell HJ, Ali RY, Vilgalys RJ, Mitchell TG. Dynamic and heterogeneous mutations to fluconazole resistance in Cryptococcus neoformans. Antimicrobial Agents and Chemotherapy. 45: 420-7. PMID 11158735 DOI: 10.1128/Aac.45.2.420-427.2001 |
0.345 |
|
| 2001 |
James TY, Moncalvo JM, Li S, Vilgalys R. Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics. 157: 149-61. PMID 11139499 |
0.703 |
|
| 2001 |
Redhead SA, Vilgalys R, Moncalvo JM, Johnson J, Hopple J.S. J. Coprinus Pers. and the disposition of Coprinus species sensu lato Taxon. 50: 203-241. DOI: 10.2307/1224525 |
0.427 |
|
| 2001 |
Gonzalez D, Carling DE, Kuninaga S, Vilgalys R, Cubetae MA. Ribosomal DNA systematics of Ceratobasidium and Thanatephorus with Rhizoctonia anamorphs Mycologia. 93: 1138-1150. DOI: 10.1080/00275514.2001.12063247 |
0.355 |
|
| 2001 |
Mueller GM, Wu QX, Huang YQ, Guo SY, Aldana-Gomez R, Vilgalys R. Assessing biogeographic relationships between North American and Chinese macrofungi Journal of Biogeography. 28: 271-281. DOI: 10.1046/J.1365-2699.2001.00540.X |
0.458 |
|
| 2001 |
Hughes KW, Petersen RH, Johnson JE, Moncalvo JM, Vilgalys R, Redhead SA, Thomas T, McGhee LL. Infragenic phylogeny of Collybia s. str. based on sequences of ribosomal ITS and LSU regions Mycological Research. 105: 164-172. DOI: 10.1017/S0953756200003415 |
0.396 |
|
| 2000 |
Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology. 49: 278-305. PMID 12118409 DOI: 10.1093/Sysbio/49.2.278 |
0.669 |
|
| 2000 |
Forche A, Xu J, Vilgalys R, Mitchell TG. Development and characterization of a genetic linkage map of Cryptococcus neoformans var. neoformans using amplified fragment length polymorphisms and other markers. Fungal Genetics and Biology : Fg & B. 31: 189-203. PMID 11273681 DOI: 10.1006/Fgbi.2000.1240 |
0.47 |
|
| 2000 |
McEwen JG, Taylor JW, Carter D, Xu J, Felipe MS, Vilgalys R, Mitchell TG, Kasuga T, White T, Bui T, Soares CM. Molecular typing of pathogenic fungi. Medical Mycology. 38: 189-97. PMID 11204145 DOI: 10.1080/Mmy.38.S1.189.197 |
0.593 |
|
| 2000 |
Xu J, Vilgalys R, Mitchell TG. Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Molecular Ecology. 9: 1471-81. PMID 11050543 DOI: 10.1046/J.1365-294X.2000.01021.X |
0.552 |
|
| 2000 |
Moncalvo JM, Drehmel D, Vilgalys R. Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications. Molecular Phylogenetics and Evolution. 16: 48-63. PMID 10877939 DOI: 10.1006/Mpev.2000.0782 |
0.377 |
|
| 2000 |
Xu J, Ramos AR, Vilgalys R, Mitchell TG. Clonal and spontaneous origins of fluconazole resistance in Candida albicans. Journal of Clinical Microbiology. 38: 1214-20. PMID 10699025 DOI: 10.1128/Jcm.38.3.1214-1220.2000 |
0.432 |
|
| 2000 |
Xu J, Ali RY, Gregory DA, Amick D, Lambert SE, Yoell HJ, Vilgalys RJ, Mitchell TG. Uniparental mitochondrial transmission in sexual crosses in Cryptococcus neoformans. Current Microbiology. 40: 269-73. PMID 10688697 DOI: 10.1007/S002849910053 |
0.382 |
|
| 2000 |
Pringle A, Moncalvo JM, Vilgalys R. High levels of variation in ribosomal DNA sequences within and among spores of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica Mycologia. 92: 259-268. DOI: 10.2307/3761559 |
0.617 |
|
| 2000 |
Thorn RG, Moncalvo JM, Reddy CA, Vilgalys R. Phylogenetic analyses and the distribution of nematophagy support a monophyletic Pleurotaceae within the polyphyletic pleurotoid-lentinoid fungi Mycologia. 92: 241-252. DOI: 10.2307/3761557 |
0.448 |
|
| 2000 |
James TY, Porter D, Leander CA, Vilgalys R, Longcore JE. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics Canadian Journal of Botany. 78: 336-350. DOI: 10.1139/B00-009 |
0.732 |
|
| 2000 |
Isikhuemhen OS, Moncalvo JM, Nerud F, Vilgalys R. Mating compatibility and phylogeography in Pleurotus tuberregium Mycological Research. 104: 732-737. DOI: 10.1017/S0953756299001926 |
0.413 |
|
| 1999 |
James TY, Porter D, Hamrick JL, Vilgalys R. EVIDENCE FOR LIMITED INTERCONTINENTAL GENE FLOW IN THE COSMOPOLITAN MUSHROOM, SCHIZOPHYLLUM COMMUNE. Evolution; International Journal of Organic Evolution. 53: 1665-1677. PMID 28565469 DOI: 10.1111/J.1558-5646.1999.Tb04552.X |
0.696 |
|
| 1999 |
Forche A, Schönian G, Gräser Y, Vilgalys R, Mitchell TG. Genetic structure of typical and atypical populations of Candida albicans from Africa. Fungal Genetics and Biology : Fg & B. 28: 107-25. PMID 10587473 DOI: 10.1006/Fgbi.1999.1164 |
0.342 |
|
| 1999 |
Hopple JS, Vilgalys R. Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Molecular Phylogenetics and Evolution. 13: 1-19. PMID 10508535 DOI: 10.1006/Mpev.1999.0634 |
0.44 |
|
| 1999 |
Gräser Y, El Fari M, Vilgalys R, Kuijpers AF, De Hoog GS, Presber W, Tietz H. Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region. Medical Mycology. 37: 105-14. PMID 10361266 DOI: 10.1080/02681219980000171 |
0.484 |
|
| 1999 |
Xu J, Vilgalys R, Mitchell TG. Lack of genetic differentiation between two geographically diverse samples of Candida albicans isolated from patients infected with human immunodeficiency virus. Journal of Bacteriology. 181: 1369-73. PMID 9973371 DOI: 10.1128/Jb.181.4.1369-1373.1999 |
0.472 |
|
| 1999 |
Xu J, Mitchell TG, Vilgalys R. PCR-restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candida albicans. Molecular Ecology. 8: 59-73. PMID 9919698 DOI: 10.1046/J.1365-294X.1999.00523.X |
0.477 |
|
| 1999 |
Drehmel D, Moncalvo JM, Vilgalys R. Molecular phylogeny of Amanita based on large-subunit ribosomal DNA sequences: Implications for taxonomy and character evolution Mycologia. 91: 610-618. DOI: 10.1080/00275514.1999.12061059 |
0.415 |
|
| 1999 |
Baroni TJ, Legon NW, Vilgalys R, Lodge DJ. Calocybe cyanea - A rare and beautiful agaric is discovered in Puerto Rico Mycologist. 13: 7-10. DOI: 10.1016/S0269-915X(99)80065-2 |
0.432 |
|
| 1999 |
James TY, Porter D, Hamrick JL, Vilgalys R. Evidence for limited intercontinental gene flow in the cosmopolitan mushroom, Schizophyllum commune Evolution. 53: 1665-1677. |
0.622 |
|
| 1998 |
Xu J, Vilgalys R, Mitchell TG. Colony size can be used to determine the MIC of fluconazole for pathogenic yeasts. Journal of Clinical Microbiology. 36: 2383-5. PMID 9666032 DOI: 10.1128/Jcm.36.8.2383-2385.1998 |
0.433 |
|
| 1998 |
Johnson J, Vilgalys R. Phylogenetic systematics of Lepiota sensu lato based on nuclear large subunit rDNA evidence Mycologia. 90: 971-979. DOI: 10.1080/00275514.1998.12026994 |
0.421 |
|
| 1997 |
Lewis LA, Mishler BD, Vilgalys R. Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL. Molecular Phylogenetics and Evolution. 7: 377-93. PMID 9187096 DOI: 10.1006/Mpev.1996.0395 |
0.395 |
|
| 1996 |
Yoder AD, Vilgalys R, Ruvolo M. Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions. Molecular Biology and Evolution. 13: 1339-50. PMID 8952078 DOI: 10.1093/Oxfordjournals.Molbev.A025580 |
0.389 |
|
| 1996 |
Gräser Y, Volovsek M, Arrington J, Schönian G, Presber W, Mitchell TG, Vilgalys R. Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination. Proceedings of the National Academy of Sciences of the United States of America. 93: 12473-7. PMID 8901606 DOI: 10.1073/Pnas.93.22.12473 |
0.371 |
|
| 1996 |
Yoder AD, Cartmill M, Ruvolo M, Smith K, Vilgalys R. Ancient single origin for Malagasy primates. Proceedings of the National Academy of Sciences of the United States of America. 93: 5122-6. PMID 8643538 DOI: 10.1073/Pnas.93.10.5122 |
0.42 |
|
| 1995 |
Spatafora JW, Mitchell TG, Vilgalys R. Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. Journal of Clinical Microbiology. 33: 1322-6. PMID 7615749 DOI: 10.1128/Jcm.33.5.1322-1326.1995 |
0.463 |
|
| 1995 |
Lutzoni F, Vilgalys R. Integration of morphological and molecular data sets in estimating fungal phytogenies Canadian Journal of Botany. 73: 649-659. DOI: 10.1139/B95-307 |
0.651 |
|
| 1994 |
Vilgalys R, Sun BL. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 91: 4599-603. PMID 8183955 DOI: 10.1073/Pnas.91.10.4599 |
0.477 |
|
| 1994 |
Steele KP, Vilgalys R. Phylogenetic Analyses of Polemoniaceae Using Nucleotide Sequences of the Plastid Gene matK Systematic Botany. 19: 126. DOI: 10.2307/2419717 |
0.443 |
|
| 1994 |
Vilgalys R, Cubeta MA. Molecular systematics and population biology of Rhizoctonia Annual Review of Phytopathology. 32: 135-155. DOI: 10.1146/Annurev.Py.32.090194.001031 |
0.419 |
|
| 1994 |
Vilgalys R, Sun Bao Lin. Assessment of species distributions in Pleurotus based on trapping of airborne basidiospores Mycologia. 86: 270-274. DOI: 10.1080/00275514.1994.12026407 |
0.443 |
|
| 1993 |
Meyer W, Mitchell TG, Freedman EZ, Vilgalys R. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. Journal of Clinical Microbiology. 31: 2274-80. PMID 8408543 DOI: 10.1128/Jcm.31.9.2274-2280.1993 |
0.317 |
|
| 1993 |
Hibbett DS, Vilgalys R. Phylogenetic Relationships of Lentinus (Basidiomycotina) Inferred from Molecular and Morphological Characters Systematic Botany. 18: 409. DOI: 10.2307/2419417 |
0.671 |
|
| 1993 |
Vilgalys R, Smith A, Bao Lin Sun, Miller OK. Intersterility groups in the Pleurotus ostreatus complex from the continental United States and adjacent Canada Canadian Journal of Botany. 71: 113-128. DOI: 10.1139/B93-013 |
0.682 |
|
| 1993 |
Moncalvo JM, Rehner SA, Vilgalys R. Systematics of Lyophyllum section difformia based on evidence from culture studies and ribosomal DNA sequences Mycologia. 85: 788-794. DOI: 10.1080/00275514.1993.12026333 |
0.442 |
|
| 1992 |
Bruns TD, Vilgalys R, Barns SM, Gonzalez D, Hibbett DS, Lane DJ, Simon L, Stickel S, Szaro TM, Weisburg WG. Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Molecular Phylogenetics and Evolution. 1: 231-41. PMID 1342940 DOI: 10.1016/1055-7903(92)90020-H |
0.634 |
|
| 1992 |
Mishler BD, Thrall PH, Hopple JS, Luna ED, Vilgalys R. A Molecular Approach to the Phylogeny of Bryophytes: Cladistic Analysis of Chloroplast-Encoded 16S and 23S Ribosomal RNA Genes The Bryologist. 95: 172. DOI: 10.2307/3243432 |
0.426 |
|
| 1992 |
Kay E, Vilgalys R. Spatial distribution and genetic relationships among individuals in a natural population of the oyster mushroom Pleurotus ostreatus Mycologia. 84: 173-182. DOI: 10.1080/00275514.1992.12026124 |
0.328 |
|
| 1991 |
Vilgalys R. Speciation and species concepts in the Collybia dryophila complex Mycologia. 83: 758-773. DOI: 10.1080/00275514.1991.12026081 |
0.347 |
|
| 1991 |
Hibbett DS, Vilgalys R. Evolutionary relationships of Lentinus to the Polyporaceae: evidence from restriction analysis of enzymatically amplified ribosomal DNA Mycologia. 83: 425-439. DOI: 10.1080/00275514.1991.12026032 |
0.671 |
|
| 1991 |
Gowan SP, Vilgalys R. RIBOSOMAL DNA LENGTH POLYMORPHISMS WITHIN POPULATIONS OF XYLARIA MAGNOLIAE (ASCOMYCOTINA) American Journal of Botany. 78: 1603-1607. DOI: 10.1002/J.1537-2197.1991.Tb14526.X |
0.353 |
|
| 1990 |
Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology. 172: 4238-46. PMID 2376561 DOI: 10.1128/Jb.172.8.4238-4246.1990 |
0.376 |
|
| 1990 |
Vilgalys R, Gonzalez D. Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola Current Genetics. 18: 277-280. PMID 2249259 DOI: 10.1007/Bf00318394 |
0.345 |
|
| 1987 |
Vilgalys R, Miller O. Mating relationships within the Collybia dryophila group in Europe Transactions of the British Mycological Society. 89: 295-300. DOI: 10.1016/S0007-1536(87)80109-2 |
0.582 |
|
| 1987 |
Vilgalys R, Miller O. Morphological studies on the Collybia dryophila group in Europe Transactions of the British Mycological Society. 88: 461-472. DOI: 10.1016/S0007-1536(87)80029-3 |
0.636 |
|
| 1983 |
Vilgalys R, Miller OK. Biological Species in theCollybia DryophilaGroup in North America Mycologia. 75: 707-722. DOI: 10.1080/00275514.1983.12023740 |
0.665 |
|
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