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Jeffrey W. Beckman, Ph.D. - Publications

Affiliations: 
2006 University of Colorado, Boulder, Boulder, CO, United States 
Area:
Biochemistry, Molecular Biology
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Reha-Krantz LJ, Hariharan C, Subuddhi U, Xia S, Zhao C, Beckman J, Christian T, Konigsberg W. Structure of the 2-aminopurine-cytosine base pair formed in the polymerase active site of the RB69 Y567A-DNA polymerase. Biochemistry. 50: 10136-49. PMID 22023103 DOI: 10.1021/Bi2014618  0.46
2010 Beckman J, Wang M, Blaha G, Wang J, Konigsberg WH. Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP and dGMP to be inserted opposite Guanidinohydantoin . Biochemistry. 49: 8554-63. PMID 20795733 DOI: 10.1021/Bi100913V  0.358
2010 Beckman J, Wang M, Blaha G, Wang J, Konigsberg WH. Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine . Biochemistry. 49: 4116-25. PMID 20411947 DOI: 10.1021/Bi100102S  0.383
2009 Zhang H, Beckman JW, Guengerich FP. Frameshift deletion by Sulfolobus solfataricus P2 DNA polymerase Dpo4 T239W is selective for purines and involves normal conformational change followed by slow phosphodiester bond formation Journal of Biological Chemistry. 284: 35144-35153. PMID 19837980 DOI: 10.1074/Jbc.M109.067397  0.423
2009 Zhang H, Beckman J, Wang J, Konigsberg W. RB69 DNA polymerase mutants with expanded nascent base-pair-binding pockets are highly efficient but have reduced base selectivity. Biochemistry. 48: 6940-50. PMID 19522539 DOI: 10.1021/Bi900422B  0.336
2009 Trostler M, Delier A, Beckman J, Urban M, Patro JN, Spratt TE, Beese LS, Kuchta RD. Discrimination between right and wrong purine dNTPs by DNA polymerase I from Bacillus stearothermophilus. Biochemistry. 48: 4633-41. PMID 19348507 DOI: 10.1021/Bi900104N  0.71
2009 Cavanaugh NA, Urban M, Beckman J, Spratt TE, Kuchta RD. Identifying the features of purine dNTPs that allow accurate and efficient DNA replication by herpes simplex virus I DNA polymerase. Biochemistry. 48: 3554-64. PMID 19166354 DOI: 10.1021/Bi8022202  0.43
2008 Beckman JW, Wang Q, Guengerich FP. Kinetic analysis of correct nucleotide insertion by a Y-family DNA polymerase reveals conformational changes both prior to and following phosphodiester bond formation as detected by tryptophan fluorescence. The Journal of Biological Chemistry. 283: 36711-23. PMID 18984592 DOI: 10.1074/Jbc.M806785200  0.33
2008 Cavanaugh N, Trostler M, Patro J, Beckman J, Kuchta RD. Mechanisms by which DNA polymerases discriminate between right and wrong dNTPs Collection of Czechoslovak Chemical Communications. 10: 186-190. DOI: 10.1135/Css200810186  0.592
2007 Beckman J, Kincaid K, Hocek M, Spratt T, Engels J, Cosstick R, Kuchta RD. Human DNA polymerase alpha uses a combination of positive and negative selectivity to polymerize purine dNTPs with high fidelity. Biochemistry. 46: 448-60. PMID 17209555 DOI: 10.1021/Bi061243S  0.697
2005 Kincaid K, Beckman J, Zivkovic A, Halcomb RL, Engels JW, Kuchta RD. Exploration of factors driving incorporation of unnatural dNTPS into DNA by Klenow fragment (DNA polymerase I) and DNA polymerase alpha. Nucleic Acids Research. 33: 2620-8. PMID 15879351 DOI: 10.1093/Nar/Gki563  0.599
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