Vahe Bandarian - Publications

Affiliations: 
Biochemistry & Molecular Biophysics University of Arizona, Tucson, AZ 
Area:
Biochemistry

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Grell TAJ, Bell BN, Nguyen C, Dowling DP, Bruender NA, Bandarian V, Drennan CL. Crystal structure of AdoMet radical enzyme 7-carboxy-7-deazaguanine synthase from Escherichia coli suggests how modifications near [4Fe-4S] cluster engender flavodoxin specificity. Protein Science : a Publication of the Protein Society. PMID 30341796 DOI: 10.2210/Pdb6Nhl/Pdb  0.4
2018 Walker LM, Kincannon WM, Bandarian V, Elliott SJ. Deconvoluting the Reduction Potentials for the three [4Fe-4S] clusters in an AdoMet Radical SCIFF Maturase. Biochemistry. PMID 30272955 DOI: 10.1021/Acs.Biochem.8B00846  0.32
2018 Grell TAJ, Kincannon WM, Bruender NA, Blaesi EJ, Krebs C, Bandarian V, Drennan CL. Structural and spectroscopic analyses of the sporulation killing factor biosynthetic enzyme SkfB, a bacterial AdoMet radical sactisynthase. The Journal of Biological Chemistry. PMID 30217813 DOI: 10.1074/Jbc.Ra118.005369  0.48
2018 Lewis JK, Bruender NA, Bandarian V. QueE: A Radical SAM Enzyme Involved in the Biosynthesis of 7-Deazapurine Containing Natural Products. Methods in Enzymology. 606: 95-118. PMID 30097106 DOI: 10.1016/Bs.Mie.2018.05.001  0.4
2018 Kincannon W, Bruender NA, Bandarian V. A Radical Clock Probe Uncouples H-atom Abstraction from Thi-oether Crosslink Formation by the Radical SAM Enzyme SkfB. Biochemistry. PMID 29965747 DOI: 10.1021/Acs.Biochem.8B00537  0.4
2018 Grell TAJ, Young AP, Drennan CL, Bandarian V. Biochemical and Structural Characterization of a Schiff Base in the Radical-Mediated Biosynthesis of 4-Demethylwyosine by TYW1. Journal of the American Chemical Society. PMID 29792696 DOI: 10.1021/Jacs.8B01493  0.4
2018 Wilcoxen J, Bruender NA, Bandarian V, Britt RD. A Radical Intermediate in Bacillus subtilis QueE During Turnover With the Substrate Analog 6-Carboxypterin. Journal of the American Chemical Society. PMID 29303575 DOI: 10.1021/Jacs.7B10860  0.4
2017 Nelp MT, Young AP, Stepanski BM, Bandarian V. Human Viperin Causes Radical SAM Dependent Elongation of E. coli Hinting at its Physiological Role. Biochemistry. PMID 28708394 DOI: 10.1021/Acs.Biochem.7B00608  0.36
2017 Bruender NA, Bandarian V. The creatininase homolog MftE from Mycobacterium smegmatis catalyzes a peptide cleavage reaction in the biosynthesis of a novel RiPP. The Journal of Biological Chemistry. PMID 28077628 DOI: 10.1074/Jbc.M116.762062  0.4
2017 Bruender NA, Grell TA, Dowling DP, McCarty RM, Drennan CL, Bandarian V. 7-Carboxy-7-deazaguanine synthase - A radical S-adenosyl-L-methionine enzyme with polar tendencies. Journal of the American Chemical Society. PMID 28045519 DOI: 10.1021/Jacs.6B11381  1
2016 Dowling DP, Miles ZD, Köhrer C, Maiocco SJ, Elliott SJ, Bandarian V, Drennan CL. Molecular basis of cobalamin-dependent RNA modification. Nucleic Acids Research. PMID 27638883 DOI: 10.1093/Nar/Gkw806  0.72
2016 Bruender NA, Bandarian V. SkfB abstracts a hydrogen atom from Cα on SkfA to initiate thioether crosslink formation. Biochemistry. PMID 27410522 DOI: 10.1021/Acs.Biochem.6B00598  1
2016 Bruender NA, Bandarian V. The radical S-adenosyl-L-methionine enzyme MftC catalyzes an oxidative decarboxylation of the C-terminus of the MftA peptide. Biochemistry. PMID 27158836 DOI: 10.1021/Acs.Biochem.6B00355  1
2016 Bruender NA, Wilcoxen J, Britt RD, Bandarian V. Biochemical and spectroscopic characterization of a radical SAM enzyme involved in the formation of a peptide thioether crosslink. Biochemistry. PMID 27007615 DOI: 10.1021/Acs.Biochem.6B00145  1
2016 Bruender NA, Young AP, Bandarian V. Correction to Chemical and Biological Reduction of the Radical SAM Enzyme 7-Carboxy-7-deazaguanine Synthase. Biochemistry. PMID 26950390 DOI: 10.1021/Acs.Biochem.6B00147  1
2016 Nelp MT, Song Y, Wysocki VH, Bandarian V. A Protein-Derived Oxygen is the Source of the Amide Oxygen of Nitrile Hydratases. The Journal of Biological Chemistry. PMID 26865634 DOI: 10.1074/Jbc.M115.704791  1
2016 Skinner OS, Havugimana PC, Haverland NA, Fornelli L, Early BP, Greer JB, Fellers RT, Durbin KR, Do Vale LH, Melani RD, Seckler HS, Nelp MT, Belov ME, Horning SR, Makarov AA, ... ... Bandarian V, et al. An informatic framework for decoding protein complexes by top-down mass spectrometry. Nature Methods. PMID 26780093 DOI: 10.1038/Nmeth.3731  0.36
2015 Song Y, Nelp MT, Bandarian V, Wysocki VH. Refining the Structural Model of a Heterohexameric Protein Complex: Surface Induced Dissociation and Ion Mobility Provide Key Connectivity and Topology Information. Acs Central Science. 1: 477-487. PMID 26744735 DOI: 10.1021/Acscentsci.5B00251  0.36
2015 Bandarian V, Drennan CL. Radical-mediated ring contraction in the biosynthesis of 7-deazapurines. Current Opinion in Structural Biology. 35: 116-124. PMID 26643180 DOI: 10.1016/J.Sbi.2015.11.005  1
2015 Miles ZD, Myers WK, Kincannon WM, Britt RD, Bandarian V. Biochemical and Spectroscopic Studies of Epoxyqueuosine Reductase: A Novel Iron-Sulfur Cluster- and Cobalamin-Containing Protein Involved in the Biosynthesis of Queuosine. Biochemistry. 54: 4927-35. PMID 26230193 DOI: 10.1021/Acs.Biochem.5B00335  1
2015 Nelp MT, Bandarian V. A Single Enzyme Transforms a Carboxylic Acid into a Nitrile through an Amide Intermediate. Angewandte Chemie (International Ed. in English). 54: 10627-9. PMID 26228534 DOI: 10.1002/Anie.201504505  0.36
2015 Young AP, Bandarian V. Mechanistic Studies of the Radical S-Adenosyl-l-methionine Enzyme 4-Demethylwyosine Synthase Reveal the Site of Hydrogen Atom Abstraction. Biochemistry. 54: 3569-72. PMID 26052987 DOI: 10.1021/Acs.Biochem.5B00476  1
2015 Bruender NA, Young AP, Bandarian V. Chemical and Biological Reduction of the Radical SAM Enzyme CPH4 Synthase. Biochemistry. 54: 2903-10. PMID 25933252 DOI: 10.1021/Acs.Biochem.5B00210  1
2015 Lajoie DM, Roberts SA, Zobel-Thropp PA, Delahaye JL, Bandarian V, Binford GJ, Cordes MH. Variable Substrate Preference among Phospholipase D Toxins from Sicariid Spiders. The Journal of Biological Chemistry. 290: 10994-1007. PMID 25752604 DOI: 10.1074/Jbc.M115.636951  1
2014 Miles ZD, Roberts SA, McCarty RM, Bandarian V. Biochemical and structural studies of 6-carboxy-5,6,7,8-tetrahydropterin synthase reveal the molecular basis of catalytic promiscuity within the tunnel-fold superfamily. The Journal of Biological Chemistry. 289: 23641-52. PMID 24990950 DOI: 10.1074/Jbc.M114.555680  1
2014 Nelp MT, Astashkin AV, Breci LA, McCarty RM, Bandarian V. The alpha subunit of nitrile hydratase is sufficient for catalytic activity and post-translational modification. Biochemistry. 53: 3990-4. PMID 24914472 DOI: 10.1021/Bi500260J  1
2014 Dowling DP, Bruender NA, Young AP, McCarty RM, Bandarian V, Drennan CL. Radical SAM enzyme QueE defines a new minimal core fold and metal-dependent mechanism. Nature Chemical Biology. 10: 106-12. PMID 24362703 DOI: 10.1038/Nchembio.1426  1
2013 Young AP, Bandarian V. Radical mediated ring formation in the biosynthesis of the hypermodified tRNA base wybutosine. Current Opinion in Chemical Biology. 17: 613-8. PMID 23856057 DOI: 10.1016/J.Cbpa.2013.05.035  1
2013 McCarty RM, Krebs C, Bandarian V. Spectroscopic, steady-state kinetic, and mechanistic characterization of the radical SAM enzyme QueE, which catalyzes a complex cyclization reaction in the biosynthesis of 7-deazapurines. Biochemistry. 52: 188-98. PMID 23194065 DOI: 10.1021/Bi301156W  1
2012 McCarty RM, Bandarian V. Biosynthesis of pyrrolopyrimidines. Bioorganic Chemistry. 43: 15-25. PMID 22382038 DOI: 10.1016/J.Bioorg.2012.01.001  1
2011 Young AP, Bandarian V. Pyruvate is the source of the two carbons that are required for formation of the imidazoline ring of 4-demethylwyosine. Biochemistry. 50: 10573-5. PMID 22026549 DOI: 10.1021/Bi2015053  1
2011 Jenkins JL, Krucinska J, McCarty RM, Bandarian V, Wedekind JE. Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. The Journal of Biological Chemistry. 286: 24626-37. PMID 21592962 DOI: 10.1074/Jbc.M111.230375  1
2011 Miles ZD, McCarty RM, Molnar G, Bandarian V. Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification. Proceedings of the National Academy of Sciences of the United States of America. 108: 7368-72. PMID 21502530 DOI: 10.1073/Pnas.1018636108  1
2011 Blackwell AE, Dodds ED, Bandarian V, Wysocki VH. Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation. Analytical Chemistry. 83: 2862-5. PMID 21417466 DOI: 10.1021/Ac200452B  1
2009 McCarty RM, Somogyi A, Lin G, Jacobsen NE, Bandarian V. The deazapurine biosynthetic pathway revealed: in vitro enzymatic synthesis of PreQ(0) from guanosine 5'-triphosphate in four steps. Biochemistry. 48: 3847-52. PMID 19354300 DOI: 10.1021/Bi900400E  1
2009 Spitale RC, Torelli AT, Krucinska J, Bandarian V, Wedekind JE. The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain. The Journal of Biological Chemistry. 284: 11012-6. PMID 19261617 DOI: 10.1074/Jbc.C900024200  1
2009 McCarty RM, Somogyi A, Bandarian V. Escherichia coli QueD Is a 6-Carboxy-5,6,7,8-tetrahydropterin synthase Biochemistry. 48: 2301-2303. PMID 19231875 DOI: 10.1021/Bi9001437  1
2008 Spoonamore JE, Roberts SA, Heroux A, Bandarian V. Structure of a 6-pyruvoyltetrahydropterin synthase homolog from Streptomyces coelicolor. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 64: 875-9. PMID 18931427 DOI: 10.1107/S1744309108027048  1
2008 McCarty RM, Bandarian V. Deciphering deazapurine biosynthesis: pathway for pyrrolopyrimidine nucleosides toyocamycin and sangivamycin. Chemistry & Biology. 15: 790-8. PMID 18721750 DOI: 10.1016/J.Chembiol.2008.07.012  1
2008 Spoonamore JE, Bandarian V. Understanding functional divergence in proteins by studying intragenomic homologues. Biochemistry. 47: 2592-600. PMID 18281960 DOI: 10.1021/Bi702263Z  1
2008 Morrison SD, Roberts SA, Zegeer AM, Montfort WR, Bandarian V. A new use for a familiar fold: the X-ray crystal structure of GTP-bound GTP cyclohydrolase III from Methanocaldococcus jannaschii reveals a two metal ion catalytic mechanism. Biochemistry. 47: 230-42. PMID 18052207 DOI: 10.1021/Bi701782E  1
2007 Quaranta D, McCarty R, Bandarian V, Rensing C. The copper-inducible cin operon encodes an unusual methionine-rich azurin-like protein and a pre-Q0 reductase in Pseudomonas putida KT2440. Journal of Bacteriology. 189: 5361-71. PMID 17483220 DOI: 10.1128/Jb.00377-07  1
2006 Spoonamore JE, Dahlgran AL, Jacobsen NE, Bandarian V. Evolution of new function in the GTP cyclohydrolase II proteins of Streptomyces coelicolor. Biochemistry. 45: 12144-55. PMID 17002314 DOI: 10.1021/Bi061005X  1
2006 Poyner RR, Anderson MA, Bandarian V, Cleland WW, Reed GH. Probing nitrogen-sensitive steps in the free-radical-mediated deamination of amino alcohols by ethanolamine ammonia-lyase. Journal of the American Chemical Society. 128: 7120-1. PMID 16734439 DOI: 10.1021/Ja060710Q  1
2004 Bandarian V, Matthews RG. Measurement of energetics of conformational change in cobalamin-dependent methionine synthase. Methods in Enzymology. 380: 152-69. PMID 15051336 DOI: 10.1016/S0076-6879(04)80007-7  1
2003 Bandarian V, Ludwig ML, Matthews RG. Factors modulating conformational equilibria in large modular proteins: a case study with cobalamin-dependent methionine synthase. Proceedings of the National Academy of Sciences of the United States of America. 100: 8156-63. PMID 12832615 DOI: 10.1073/Pnas.1133218100  1
2003 Matthews RG, Smith AE, Zhou ZS, Taurog RE, Bandarian V, Evans JC, Ludwig M. Cobalamin-Dependent and Cobalamin-Independent Methionine Synthases: Are There Two Solutions to the Same Chemical Problem? Helvetica Chimica Acta. 86: 3939-3954. DOI: 10.1002/Hlca.200390329  1
2002 Bandarian V, Reed GH. Analysis of the electron paramagnetic resonance spectrum of a radical intermediate in the coenzyme B(12)-dependent ethanolamine ammonia-lyase catalyzed reaction of S-2-aminopropanol. Biochemistry. 41: 8580-8. PMID 12093274 DOI: 10.1021/Bi0201217  1
2002 Bandarian V, Pattridge KA, Lennon BW, Huddler DP, Matthews RG, Ludwig ML. Domain alternation switches B(12)-dependent methionine synthase to the activation conformation. Nature Structural Biology. 9: 53-6. PMID 11731805 DOI: 10.1038/Nsb738  1
2001 Miller J, Bandarian V, Reed GH, Frey PA. Inhibition of lysine 2,3-aminomutase by the alternative substrate 4-thialysine and characterization of the 4-thialysyl radical intermediate. Archives of Biochemistry and Biophysics. 387: 281-8. PMID 11370852 DOI: 10.1006/Abbi.2001.2261  1
2001 Bandarian V, Matthews RG. Quantitation of rate enhancements attained by the binding of cobalamin to methionine synthase. Biochemistry. 40: 5056-64. PMID 11305922 DOI: 10.1021/Bi002801K  1
2001 LoBrutto R, Bandarian V, Magnusson OT, Chen X, Schramm VL, Reed GH. 5'-Deoxyadenosine contacts the substrate radical intermediate in the active site of ethanolamine ammonia-lyase: 2H and 13C electron nuclear double resonance studies. Biochemistry. 40: 9-14. PMID 11141051 DOI: 10.1021/Bi001865S  1
2000 Bandarian V, Reed GH. Isotope effects in the transient phases of the reaction catalyzed by ethanolamine ammonia-lyase: Determination of the number of exchangeable hydrogens in the enzyme - Cofactor complex Biochemistry. 39: 12069-12075. PMID 11009622 DOI: 10.1021/Bi001014K  1
2000 Wu W, Booker S, Lieder KW, Bandarian V, Reed GH, Frey PA. Lysine 2,3-aminomutase and trans-4,5-dehydrolysine: characterization of an allylic analogue of a substrate-based radical in the catalytic mechanism. Biochemistry. 39: 9561-70. PMID 10924153 DOI: 10.1021/Bi000658P  1
2000 Abend A, Bandarian V, Reed GH, Frey PA. Identification of cis-ethanesemidione as the organic radical derived from glycolaldehyde in the suicide inactivation of dioldehydrase and of ethanolamine ammonia-lyase. Biochemistry. 39: 6250-7. PMID 10821701 DOI: 10.1021/Bi992963K  1
2000 Chang CWT, Johnson DA, Bandarian V, Zhou H, LoBrutto R, Reed GH, Liu HW. Characterization of a unique coenzyme B6 radical in the ascarylose biosynthetic pathway [14] Journal of the American Chemical Society. 122: 4239-4240. DOI: 10.1021/Ja0000807  1
1999 Abend A, Bandarian V, Nitsche R, Stupperich E, Rétey J, Reed GH. Ethanolamine ammonia-lyase has a "base-on" binding mode for coenzyme B(12). Archives of Biochemistry and Biophysics. 370: 138-41. PMID 10496987 DOI: 10.1006/Abbi.1999.1382  1
1999 Bandarian V, Poyner RR, Reed GH. Hydrogen atom exchange between 5'-deoxyadenosine and hydroxyethylhydrazine during the single turnover inactivation of ethanolamine ammonia-lyase Biochemistry. 38: 12403-12407. PMID 10493808 DOI: 10.1021/Bi9906219  1
1999 Bandarian V, Reed GH. Hydrazine cation radical in the active site of ethanolamine ammonia- lyase: Mechanism-based inactivation by hydroxyethylhydrazine Biochemistry. 38: 12394-12402. PMID 10493807 DOI: 10.1021/Bi990620G  1
1998 Abend A, Nitsche R, Bandarian V, Stupperich E, Rétey J. Dioldehydratase binds coenzyme B12 in the 'base-on' mode: ESR investigations on Cob(II)alamin Angewandte Chemie - International Edition. 37: 625-627. DOI: 10.1002/(SICI)1521-3773(19980316)37:5<625::AID-ANIE625>3.0.CO;2-4  1
1996 Johnson DA, Gassner GT, Bandarian V, Ruzicka FJ, Ballou DP, Reed GH, Liu HW. Kinetic characterization of an organic radical in the ascarylose biosynthetic pathway. Biochemistry. 35: 15846-56. PMID 8961949 DOI: 10.1021/Bi961370W  1
1996 Xia B, Cheng H, Bandarian V, Reed GH, Markley JL. Human ferredoxin: overproduction in Escherichia coli, reconstitution in vitro, and spectroscopic studies of iron-sulfur cluster ligand cysteine-to-serine mutants. Biochemistry. 35: 9488-95. PMID 8755728 DOI: 10.1021/Bi960467F  1
1996 Spangler NJ, Lindahl PA, Bandarian V, Ludden PW. Spectroelectrochemical characterization of the metal centers in carbon monoxide dehydrogenase (CODH) and nickel-deficient CODH from Rhodospirillum rubrum Journal of Biological Chemistry. 271: 7973-7977. PMID 8626477 DOI: 10.1074/Jbc.271.14.7973  1
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