| Year |
Citation |
Score |
| 2024 |
Manfroi B, Cuc BT, Sokal A, Vandenberghe A, Temmam S, Attia M, El Behi M, Camaglia F, Nguyen NT, Pohar J, Salem-Wehbe L, Pottez-Jouatte V, Borzakian S, Elenga N, Galeotti C, ... ... Walczak AM, et al. Preschool-age children maintain a distinct memory CD4 T cell and memory B cell response after SARS-CoV-2 infection. Science Translational Medicine. 16: eadl1997. PMID 39292802 DOI: 10.1126/scitranslmed.adl1997 |
0.504 |
|
| 2024 |
Abbate MF, Dupic T, Vigne E, Shahsavarian MA, Walczak AM, Mora T. Computational detection of antigen-specific B cell receptors following immunization. Proceedings of the National Academy of Sciences of the United States of America. 121: e2401058121. PMID 39163333 DOI: 10.1073/pnas.2401058121 |
0.573 |
|
| 2024 |
Spisak N, Athènes G, Dupic T, Mora T, Walczak AM. Combining mutation and recombination statistics to infer clonal families in antibody repertoires. Elife. 13. PMID 39120133 DOI: 10.7554/eLife.86181 |
0.551 |
|
| 2024 |
Meynard-Piganeau B, Feinauer C, Weigt M, Walczak AM, Mora T. TULIP: A transformer-based unsupervised language model for interacting peptides and T cell receptors that generalizes to unseen epitopes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316401121. PMID 38838016 DOI: 10.1073/pnas.2316401121 |
0.546 |
|
| 2024 |
Karnaukhov VK, Le Gac AL, Bilonda Mutala L, Darbois A, Perrin L, Legoux F, Walczak AM, Mora T, Lantz O. Innate-like T cell subset commitment in the murine thymus is independent of TCR characteristics and occurs during proliferation. Proceedings of the National Academy of Sciences of the United States of America. 121: e2311348121. PMID 38530897 DOI: 10.1073/pnas.2311348121 |
0.547 |
|
| 2024 |
Camaglia F, Nemenman I, Mora T, Walczak AM. Bayesian estimation of the Kullback-Leibler divergence for categorical systems using mixtures of Dirichlet priors. Physical Review. E. 109: 024305. PMID 38491647 DOI: 10.1103/PhysRevE.109.024305 |
0.66 |
|
| 2024 |
Ortega MR, Pogorelyy MV, Minervina AA, Thomas PG, Walczak AM, Mora T. Learning predictive signatures of HLA type from T-cell repertoires. Biorxiv : the Preprint Server For Biology. PMID 38352609 DOI: 10.1101/2024.01.25.577228 |
0.539 |
|
| 2023 |
Kreer C, Lupo C, Ercanoglu MS, Gieselmann L, Spisak N, Grossbach J, Schlotz M, Schommers P, Gruell H, Dold L, Beyer A, Nourmohammad A, Mora T, Walczak AM, Klein F. Probabilities of developing HIV-1 bNAb sequence features in uninfected and chronically infected individuals. Nature Communications. 14: 7137. PMID 37932288 DOI: 10.1038/s41467-023-42906-y |
0.489 |
|
| 2023 |
Chardès V, Mazzolini A, Mora T, Walczak AM. Evolutionary stability of antigenically escaping viruses. Proceedings of the National Academy of Sciences of the United States of America. 120: e2307712120. PMID 37871216 DOI: 10.1073/pnas.2307712120 |
0.507 |
|
| 2023 |
Hahn L, Walczak AM, Mora T. Dynamical Information Synergy in Biochemical Signaling Networks. Physical Review Letters. 131: 128401. PMID 37802943 DOI: 10.1103/PhysRevLett.131.128401 |
0.494 |
|
| 2023 |
Bravi B, Di Gioacchino A, Fernandez-de-Cossio-Diaz J, Walczak AM, Mora T, Cocco S, Monasson R. A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity. Elife. 12. PMID 37681658 DOI: 10.7554/eLife.85126 |
0.562 |
|
| 2023 |
Mora T, Walczak AM. Towards a quantitative theory of tolerance. Trends in Immunology. PMID 37263823 DOI: 10.1016/j.it.2023.04.008 |
0.553 |
|
| 2023 |
Urbanus J, Cosgrove J, Beltman JB, Elhanati Y, Moral RA, Conrad C, van Heijst JW, Tubeuf E, Velds A, Kok L, Merle C, Magnusson JP, Guyonnet L, Frisén J, Fre S, ... Walczak AM, et al. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications. 14: 2184. PMID 37069150 DOI: 10.1038/s41467-023-37167-8 |
0.49 |
|
| 2023 |
Mazzolini A, Mora T, Walczak AM. Inspecting the interaction between human immunodeficiency virus and the immune system through genetic turnover. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220056. PMID 37004725 DOI: 10.1098/rstb.2022.0056 |
0.545 |
|
| 2023 |
Ruiz Ortega M, Spisak N, Mora T, Walczak AM. Modeling and predicting the overlap of B- and T-cell receptor repertoires in healthy and SARS-CoV-2 infected individuals. Plos Genetics. 19: e1010652. PMID 36827454 DOI: 10.1371/journal.pgen.1010652 |
0.572 |
|
| 2023 |
Chen X, Ginoux F, Carbo-Tano M, Mora T, Walczak AM, Wyart C. Granger causality analysis for calcium transients in neuronal networks, challenges and improvements. Elife. 12. PMID 36749019 DOI: 10.7554/eLife.81279 |
0.471 |
|
| 2023 |
Bensouda Koraichi M, Ferri S, Walczak AM, Mora T. Inferring the T cell repertoire dynamics of healthy individuals. Proceedings of the National Academy of Sciences of the United States of America. 120: e2207516120. PMID 36669107 DOI: 10.1073/pnas.2207516120 |
0.583 |
|
| 2023 |
Camaglia F, Ryvkin A, Greenstein E, Reich-Zeliger S, Chain B, Mora T, Walczak AM, Friedman N. Quantifying changes in the T cell receptor repertoire during thymic development. Elife. 12. PMID 36661220 DOI: 10.7554/eLife.81622 |
0.558 |
|
| 2022 |
Ferretti F, Grosse-Holz S, Holmes C, Shivers JL, Giardina I, Mora T, Walczak AM. Signatures of irreversibility in microscopic models of flocking. Physical Review. E. 106: 034608. PMID 36266796 DOI: 10.1103/PhysRevE.106.034608 |
0.501 |
|
| 2022 |
Koraichi MB, Touzel MP, Mazzolini A, Mora T, Walczak AM. NoisET: Noise Learning and Expansion Detection of T-Cell Receptors. The Journal of Physical Chemistry. A. PMID 36178325 DOI: 10.1021/acs.jpca.2c05002 |
0.551 |
|
| 2022 |
Greiff V, Luning Prak ET, O'Donnell T, Finotello F, Reddy ST, Walczak A, Mora T. What are the current driving questions in immune repertoire research? Cell Systems. 13: 683-686. PMID 36137509 DOI: 10.1016/j.cels.2022.08.006 |
0.481 |
|
| 2022 |
Krishnamurthy K, Hermundstad AM, Mora T, Walczak AM, Balasubramanian V. Disorder and the Neural Representation of Complex Odors. Frontiers in Computational Neuroscience. 16: 917786. PMID 36003684 DOI: 10.3389/fncom.2022.917786 |
0.623 |
|
| 2022 |
Galpern EA, Marchi J, Mora T, Walczak AM, Ferreiro DU. Evolution and folding of repeat proteins. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204131119. PMID 35905321 DOI: 10.1073/pnas.2204131119 |
0.523 |
|
| 2022 |
Isacchini G, Spisak N, Nourmohammad A, Mora T, Walczak AM. Mutual information maximization for amortized likelihood inference from sampled trajectories: MINIMALIST. Physical Review. E. 105: 055309. PMID 35706287 DOI: 10.1103/PhysRevE.105.055309 |
0.513 |
|
| 2022 |
Lupo C, Spisak N, Walczak AM, Mora T. Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. Plos Computational Biology. 18: e1010167. PMID 35653375 DOI: 10.1371/journal.pcbi.1010167 |
0.543 |
|
| 2022 |
Ferretti F, Chardès V, Mora T, Walczak AM, Giardina I. Renormalization group approach to connect discrete- and continuous-time descriptions of Gaussian processes. Physical Review. E. 105: 044133. PMID 35590618 DOI: 10.1103/PhysRevE.105.044133 |
0.494 |
|
| 2022 |
Łuksza M, Sethna ZM, Rojas LA, Lihm J, Bravi B, Elhanati Y, Soares K, Amisaki M, Dobrin A, Hoyos D, Guasp P, Zebboudj A, Yu R, Chandra AK, Waters T, ... ... Walczak AM, et al. Neoantigen quality predicts immunoediting in survivors of pancreatic cancer. Nature. PMID 35589842 DOI: 10.1038/s41586-022-04735-9 |
0.509 |
|
| 2022 |
Chardès V, Vergassola M, Walczak AM, Mora T. Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35177475 DOI: 10.1073/pnas.2113512119 |
0.547 |
|
| 2022 |
Shakiba N, Li C, Garcia-Ojalvo J, Cho KH, Patil K, Walczak A, Liu YY, Kuehn S, Nie Q, Klein A, Deco G, Kringelbach M, Iyer-Biswas S. How can Waddington-like landscapes facilitate insights beyond developmental biology? Cell Systems. 13: 4-9. PMID 35051373 DOI: 10.1016/j.cels.2021.12.003 |
0.713 |
|
| 2021 |
Heltberg ML, Miné-Hattab J, Taddei A, Walczak AM, Mora T. Physical observables to determine the nature of membrane-less cellular sub-compartments. Elife. 10. PMID 34677123 DOI: 10.7554/eLife.69181 |
0.484 |
|
| 2021 |
Phillips AM, Lawrence KR, Moulana A, Dupic T, Chang J, Johnson MS, Cvijovic I, Mora T, Walczak AM, Desai MM. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies. Elife. 10. PMID 34491198 DOI: 10.7554/eLife.71393 |
0.513 |
|
| 2021 |
Bravi B, Balachandran VP, Greenbaum BD, Walczak AM, Mora T, Monasson R, Cocco S. Probing T-cell response by sequence-based probabilistic modeling. Plos Computational Biology. 17: e1009297. PMID 34473697 DOI: 10.1371/journal.pcbi.1009297 |
0.573 |
|
| 2021 |
Marchi J, Lässig M, Walczak AM, Mora T. Antigenic waves of virus-immune coevolution. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34183397 DOI: 10.1073/pnas.2103398118 |
0.524 |
|
| 2021 |
Isacchini G, Walczak AM, Mora T, Nourmohammad A. Deep generative selection models of T and B cell receptor repertoires with soNNia. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33795515 DOI: 10.1073/pnas.2023141118 |
0.578 |
|
| 2021 |
Sachdeva V, Mora T, Walczak AM, Palmer SE. Optimal prediction with resource constraints using the information bottleneck. Plos Computational Biology. 17: e1008743. PMID 33684112 DOI: 10.1371/journal.pcbi.1008743 |
0.633 |
|
| 2021 |
Miné-Hattab J, Heltberg M, Villemeur M, Guedj C, Mora T, Walczak AM, Dahan M, Taddei A. Single molecule microscopy reveals key physical features of repair foci in living cells. Elife. 10. PMID 33543712 DOI: 10.7554/eLife.60577 |
0.473 |
|
| 2021 |
Gueguen P, Metoikidou C, Dupic T, Lawand M, Goudot C, Baulande S, Lameiras S, Lantz O, Girard N, Seguin-Givelet A, Lefevre M, Mora T, Walczak AM, Waterfall JJ, Amigorena S. Contribution of resident and circulating precursors to tumor-infiltrating CD8 T cell populations in lung cancer. Science Immunology. 6. PMID 33514641 DOI: 10.1126/sciimmunol.abd5778 |
0.507 |
|
| 2021 |
Murugan A, Husain K, Rust M, Bass JT, Hepler C, Pietsch JMJ, Swain PS, Toettcher JE, Jena S, Chakraborty AK, Sprenger KG, Mora T, Walczak A, Rivoire O, Wang S, et al. Roadmap on biology in time varying environments. Physical Biology. PMID 33477124 DOI: 10.1088/1478-3975/abde8d |
0.486 |
|
| 2021 |
Minervina AA, Komech EA, Titov A, Bensouda Koraichi M, Rosati E, Mamedov IZ, Franke A, Efimov GA, Chudakov DM, Mora T, Walczak AM, Lebedev YB, Pogorelyy MV. Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection. Elife. 10. PMID 33399535 DOI: 10.7554/eLife.63502 |
0.554 |
|
| 2021 |
Dupic T, Bensouda Koraichi M, Minervina AA, Pogorelyy MV, Mora T, Walczak AM. Immune fingerprinting through repertoire similarity. Plos Genetics. 17: e1009301. PMID 33395405 DOI: 10.1371/journal.pgen.1009301 |
0.567 |
|
| 2020 |
Bravi B, Tubiana J, Cocco S, Monasson R, Mora T, Walczak AM. RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles. Cell Systems. PMID 33338400 DOI: 10.1016/j.cels.2020.11.005 |
0.496 |
|
| 2020 |
Sethna Z, Isacchini G, Dupic T, Mora T, Walczak AM, Elhanati Y. Population variability in the generation and selection of T-cell repertoires. Plos Computational Biology. 16: e1008394. PMID 33296360 DOI: 10.1371/journal.pcbi.1008394 |
0.551 |
|
| 2020 |
Spisak N, Walczak AM, Mora T. Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data. Nucleic Acids Research. PMID 33035336 DOI: 10.1093/nar/gkaa825 |
0.557 |
|
| 2020 |
Isacchini G, Olivares C, Nourmohammad A, Walczak AM, Mora T. SOS: online probability estimation and generation of T-and B-cell receptors. Bioinformatics (Oxford, England). PMID 32814974 DOI: 10.1093/Bioinformatics/Btaa574 |
0.564 |
|
| 2020 |
Isacchini G, Sethna Z, Elhanati Y, Nourmohammad A, Walczak AM, Mora T. Generative models of T-cell receptor sequences. Physical Review. E. 101: 062414. PMID 32688532 DOI: 10.1103/Physreve.101.062414 |
0.577 |
|
| 2020 |
Puelma Touzel M, Walczak AM, Mora T. Inferring the immune response from repertoire sequencing. Plos Computational Biology. 16: e1007873. PMID 32348312 DOI: 10.1371/Journal.Pcbi.1007873 |
0.582 |
|
| 2020 |
Minervina AA, Pogorelyy MV, Komech EA, Karnaukhov VK, Bacher P, Rosati E, Franke A, Chudakov D, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones. Elife. 9. PMID 32081129 DOI: 10.7554/Elife.53704 |
0.548 |
|
| 2020 |
Kreer C, Gruell H, Mora T, Walczak AM, Klein F. Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies. Vaccines. 8. PMID 31906351 DOI: 10.3390/Vaccines8010013 |
0.536 |
|
| 2020 |
Ferretti F, Chardès V, Mora T, Walczak AM, Giardina I. Building General Langevin Models from Discrete Datasets Physical Review X. 10. DOI: 10.1103/Physrevx.10.031018 |
0.522 |
|
| 2020 |
Altan-Bonnet G, Mora T, Walczak AM. Quantitative immunology for physicists Physics Reports. 849: 1-83. DOI: 10.1016/J.Physrep.2020.01.001 |
0.545 |
|
| 2019 |
Marchi J, Galpern EA, Espada R, Ferreiro DU, Walczak AM, Mora T. Size and structure of the sequence space of repeat proteins. Plos Computational Biology. 15: e1007282. PMID 31415557 DOI: 10.1371/Journal.Pcbi.1007282 |
0.508 |
|
| 2019 |
Marchi J, Lässig M, Mora T, Walczak AM. Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems. Pathogens (Basel, Switzerland). 8. PMID 31362404 DOI: 10.3390/Pathogens8030115 |
0.531 |
|
| 2019 |
Nourmohammad A, Otwinowski J, Łuksza M, Mora T, Walczak AM. Fierce selection and interference in B-cell repertoire response to chronic HIV-1. Molecular Biology and Evolution. PMID 31209469 DOI: 10.1093/Molbev/Msz143 |
0.551 |
|
| 2019 |
Pogorelyy MV, Minervina AA, Shugay M, Chudakov DM, Lebedev YB, Mora T, Walczak AM. Detecting T cell receptors involved in immune responses from single repertoire snapshots. Plos Biology. 17: e3000314. PMID 31194732 DOI: 10.1371/Journal.Pbio.3000314 |
0.577 |
|
| 2019 |
Mayer A, Balasubramanian V, Walczak AM, Mora T. How a well-adapting immune system remembers. Proceedings of the National Academy of Sciences of the United States of America. PMID 30988203 DOI: 10.1073/Pnas.1812810116 |
0.523 |
|
| 2019 |
Bradde S, Mora T, Walczak AM. Cost and benefits of clustered regularly interspaced short palindromic repeats spacer acquisition. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180095. PMID 30905281 DOI: 10.1098/Rstb.2018.0095 |
0.521 |
|
| 2019 |
Dupic T, Marcou Q, Walczak AM, Mora T. Genesis of the αβ T-cell receptor. Plos Computational Biology. 15: e1006874. PMID 30830899 DOI: 10.1371/Journal.Pcbi.1006874 |
0.517 |
|
| 2019 |
Sethna Z, Elhanati Y, Callan CG, Walczak AM, Mora T. OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinformatics (Oxford, England). PMID 30657870 DOI: 10.1093/Bioinformatics/Btz035 |
0.554 |
|
| 2019 |
Mora T, Walczak AM. How many different clonotypes do immune repertoires contain? Current Opinion in Systems Biology. 18: 104-110. DOI: 10.1016/J.Coisb.2019.10.001 |
0.575 |
|
| 2018 |
Adams RM, Kinney JB, Walczak AM, Mora T. Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy. Cell Systems. PMID 30611676 DOI: 10.1016/J.Cels.2018.12.004 |
0.516 |
|
| 2018 |
Rossi NA, Mora T, Walczak AM, Dunlop MJ. Active degradation of MarA controls coordination of its downstream targets. Plos Computational Biology. 14: e1006634. PMID 30589845 DOI: 10.1371/Journal.Pcbi.1006634 |
0.469 |
|
| 2018 |
Pogorelyy MV, Minervina AA, Touzel MP, Sycheva AL, Komech EA, Kovalenko EI, Karganova GG, Egorov ES, Komkov AY, Chudakov DM, Mamedov IZ, Mora T, Walczak AM, Lebedev YB. Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30459272 DOI: 10.1073/Pnas.1809642115 |
0.547 |
|
| 2018 |
Magadan S, Jouneau L, Puelma Touzel M, Marillet S, Chara W, Six A, Quillet E, Mora T, Walczak AM, Cazals F, Sunyer O, Fillatreau S, Boudinot P. Origin of Public Memory B Cell Clones in Fish After Antiviral Vaccination. Frontiers in Immunology. 9: 2115. PMID 30319606 DOI: 10.3389/Fimmu.2018.02115 |
0.52 |
|
| 2018 |
Toledano A, Elhanati Y, Benichou JIC, Walczak AM, Mora T, Louzoun Y. Evidence for Shaping of Light Chain Repertoire by Structural Selection. Frontiers in Immunology. 9: 1307. PMID 29988361 DOI: 10.3389/Fimmu.2018.01307 |
0.51 |
|
| 2018 |
Elhanati Y, Sethna Z, Callan CG, Mora T, Walczak AM. Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination. Immunological Reviews. 284: 167-179. PMID 29944757 DOI: 10.1111/Imr.12665 |
0.567 |
|
| 2018 |
Pogorelyy MV, Minervina AA, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Method for identification of condition-associated public antigen receptor sequences. Elife. 7. PMID 29533178 DOI: 10.7554/Elife.33050 |
0.538 |
|
| 2018 |
Marcou Q, Mora T, Walczak AM. High-throughput immune repertoire analysis with IGoR. Nature Communications. 9: 561. PMID 29422654 DOI: 10.1038/S41467-018-02832-W |
0.583 |
|
| 2018 |
Marcou Q, Carmi-Levy I, Trichot C, Soumelis V, Mora T, Walczak A. A model for the integration of conflicting exogenous and endogenous signals by dendritic cells. Physical Biology. PMID 29360100 DOI: 10.1088/1478-3975/Aaaa0A |
0.478 |
|
| 2018 |
Cavagna A, Giardina I, Mora T, Walczak AM. Physical constraints in biological collective behaviour Current Opinion in Systems Biology. 9: 49-54. DOI: 10.1016/J.Coisb.2018.03.002 |
0.495 |
|
| 2017 |
Mayer A, Mora T, Rivoire O, Walczak AM. Transitions in optimal adaptive strategies for populations in fluctuating environments. Physical Review. E. 96: 032412. PMID 29346942 DOI: 10.1103/Physreve.96.032412 |
0.523 |
|
| 2017 |
Mayer A, Rivoire O, Mora T, Walczak A. [Evolutionary explanation of the diversity of immune strategies]. Medecine Sciences : M/S. 33: 593-595. PMID 28990557 DOI: 10.1051/Medsci/20173306012 |
0.564 |
|
| 2017 |
Pogorelyy MV, Elhanati Y, Marcou Q, Sycheva AL, Komech EA, Nazarov VI, Britanova OV, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. Plos Computational Biology. 13: e1005572. PMID 28683116 DOI: 10.1371/Journal.Pcbi.1005572 |
0.555 |
|
| 2017 |
Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Inferring repeat-protein energetics from evolutionary information. Plos Computational Biology. 13: e1005584. PMID 28617812 DOI: 10.1371/Journal.Pcbi.1005584 |
0.526 |
|
| 2017 |
Fisher CK, Mora T, Walczak AM. Variable habitat conditions drive species covariation in the human microbiota. Plos Computational Biology. 13: e1005435. PMID 28448493 DOI: 10.1371/Journal.Pcbi.1005435 |
0.483 |
|
| 2017 |
Sethna Z, Elhanati Y, Dudgeon CS, Callan CG, Levine AJ, Mora T, Walczak AM. Insights into immune system development and function from mouse T-cell repertoires. Proceedings of the National Academy of Sciences of the United States of America. PMID 28196891 DOI: 10.1073/Pnas.1700241114 |
0.573 |
|
| 2017 |
Callan CG, Mora T, Walczak AM. Repertoire sequencing and the statistical ensemble approach to adaptive immunity Current Opinion in Systems Biology. 1: 44-47. DOI: 10.1016/J.Coisb.2016.12.014 |
0.566 |
|
| 2016 |
Adams RM, Mora T, Walczak AM, Kinney JB. Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves. Elife. 5. PMID 28035901 DOI: 10.7554/Elife.23156 |
0.52 |
|
| 2016 |
Mora T, Walczak AM, Castello LD, Ginelli F, Melillo S, Parisi L, Viale M, Cavagna A, Giardina I. Local equilibrium in bird flocks. Nature Physics. 12: 1153-1157. PMID 27917230 DOI: 10.1038/Nphys3846 |
0.506 |
|
| 2016 |
Mayer A, Mora T, Rivoire O, Walczak AM. Diversity of immune strategies explained by adaptation to pathogen statistics. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432970 DOI: 10.1073/Pnas.1600663113 |
0.534 |
|
| 2016 |
Mora T, Walczak AM. Rényi entropy, abundance distribution, and the equivalence of ensembles. Physical Review. E. 93: 052418. PMID 27300934 DOI: 10.1103/Physreve.93.052418 |
0.483 |
|
| 2016 |
Elhanati Y, Marcou Q, Mora T, Walczak AM. repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinformatics (Oxford, England). PMID 27153709 DOI: 10.1093/Bioinformatics/Btw112 |
0.572 |
|
| 2016 |
Sokolowski TR, Walczak AM, Bialek W, Tkačik G. Extending the dynamic range of transcription factor action by translational regulation. Physical Review. E. 93: 022404. PMID 26986359 DOI: 10.1103/Physreve.93.022404 |
0.678 |
|
| 2015 |
Desponds J, Mora T, Walczak AM. Fluctuating fitness shapes the clone-size distribution of immune repertoires. Proceedings of the National Academy of Sciences of the United States of America. PMID 26711994 DOI: 10.1073/Pnas.1512977112 |
0.585 |
|
| 2015 |
Espada R, Parra RG, Sippl MJ, Mora T, Walczak AM, Ferreiro DU. Repeat proteins challenge the concept of structural domains. Biochemical Society Transactions. 43: 844-9. PMID 26517892 DOI: 10.1042/Bst20150083 |
0.472 |
|
| 2015 |
Bagnara D, Squillario M, Kipling D, Mora T, Walczak AM, Da Silva L, Weller S, Dunn-Walters DK, Weill JC, Reynaud CA. A Reassessment of IgM Memory Subsets in Humans. Journal of Immunology (Baltimore, Md. : 1950). 195: 3716-24. PMID 26355154 DOI: 10.4049/Jimmunol.1500753 |
0.522 |
|
| 2015 |
Elhanati Y, Sethna Z, Marcou Q, Callan CG, Mora T, Walczak AM. Inferring processes underlying B-cell repertoire diversity. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26194757 DOI: 10.1098/Rstb.2014.0243 |
0.562 |
|
| 2015 |
Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Capturing coevolutionary signals inrepeat proteins. Bmc Bioinformatics. 16: 207. PMID 26134293 DOI: 10.1186/S12859-015-0648-3 |
0.518 |
|
| 2015 |
Mayer A, Balasubramanian V, Mora T, Walczak AM. How a well-adapted immune system is organized. Proceedings of the National Academy of Sciences of the United States of America. 112: 5950-5. PMID 25918407 DOI: 10.1073/Pnas.1421827112 |
0.553 |
|
| 2015 |
Cappuccio A, Zollinger R, Schenk M, Walczak A, Servant N, Barillot E, Hupé P, Modlin RL, Soumelis V. Combinatorial code governing cellular responses to complex stimuli. Nature Communications. 6: 6847. PMID 25896517 DOI: 10.1038/Ncomms7847 |
0.306 |
|
| 2014 |
Elhanati Y, Murugan A, Callan CG, Mora T, Walczak AM. Quantifying selection in immune receptor repertoires. Proceedings of the National Academy of Sciences of the United States of America. 111: 9875-80. PMID 24941953 DOI: 10.1073/Pnas.1409572111 |
0.583 |
|
| 2014 |
Cavagna A, Giardina I, Ginelli F, Mora T, Piovani D, Tavarone R, Walczak AM. Dynamical maximum entropy approach to flocking. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 042707. PMID 24827278 DOI: 10.1103/Physreve.89.042707 |
0.512 |
|
| 2014 |
Bialek W, Cavagna A, Giardina I, Mora T, Pohl O, Silvestri E, Viale M, Walczak AM. Social interactions dominate speed control in poising natural flocks near criticality. Proceedings of the National Academy of Sciences of the United States of America. 111: 7212-7. PMID 24785504 DOI: 10.1073/Pnas.1324045111 |
0.656 |
|
| 2014 |
Bagnara D, Squillario M, Kipling D, Mora T, Walczak A, Dunn-Walters DK, Weill J, Reynaud C. High-Throughput Ig Sequencing of Paired Blood and Spleen Samples Allows a Redefinition of Memory IgM Subsets in Humans Blood. 124: 565-565. DOI: 10.1182/Blood.V124.21.565.565 |
0.574 |
|
| 2014 |
Cavagna A, Del Castello L, Giardina I, Grigera T, Jelic A, Melillo S, Mora T, Parisi L, Silvestri E, Viale M, Walczak AM. Flocking and Turning: a New Model for Self-organized Collective Motion Journal of Statistical Physics. 158: 601-627. DOI: 10.1007/S10955-014-1119-3 |
0.478 |
|
| 2013 |
Six A, Mariotti-Ferrandiz ME, Chaara W, Magadan S, Pham HP, Lefranc MP, Mora T, Thomas-Vaslin V, Walczak AM, Boudinot P. The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis. Frontiers in Immunology. 4: 413. PMID 24348479 DOI: 10.3389/Fimmu.2013.00413 |
0.575 |
|
| 2013 |
Mora T, Walczak AM. Effect of phenotypic selection on stochastic gene expression. The Journal of Physical Chemistry. B. 117: 13194-205. PMID 23795617 DOI: 10.1021/Jp403231F |
0.502 |
|
| 2012 |
Murugan A, Mora T, Walczak AM, Callan CG. Statistical inference of the generation probability of T-cell receptors from sequence repertoires. Proceedings of the National Academy of Sciences of the United States of America. 109: 16161-6. PMID 22988065 DOI: 10.1073/Pnas.1212755109 |
0.587 |
|
| 2012 |
Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 041903. PMID 22680494 DOI: 10.1103/Physreve.85.041903 |
0.678 |
|
| 2012 |
Mora T, Walczak AM, Zamponi F. Transition path sampling algorithm for discrete many-body systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 036710. PMID 22587212 DOI: 10.1103/Physreve.85.036710 |
0.478 |
|
| 2012 |
Bialek W, Cavagna A, Giardina I, Mora T, Silvestri E, Viale M, Walczak AM. Statistical mechanics for natural flocks of birds. Proceedings of the National Academy of Sciences of the United States of America. 109: 4786-91. PMID 22427355 DOI: 10.1073/Pnas.1118633109 |
0.656 |
|
| 2010 |
Walczak AM, Tkacik G, Bialek W. Optimizing information flow in small genetic networks. II. Feed-forward interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 041905. PMID 20481751 DOI: 10.1103/Physreve.81.041905 |
0.69 |
|
| 2010 |
Mora T, Walczak AM, Bialek W, Callan CG. Maximum entropy models for antibody diversity. Proceedings of the National Academy of Sciences of the United States of America. 107: 5405-10. PMID 20212159 DOI: 10.1073/Pnas.1001705107 |
0.685 |
|
| 2009 |
Tkacik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 031920. PMID 19905159 DOI: 10.1103/Physreve.80.031920 |
0.698 |
|
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