Weiqun Peng - Publications

Affiliations: 
Physics The George Washington University, Washington, DC, United States 
Area:
General Biophysics, Bioinformatics Biology

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jensen IJ, Li X, McGonagill PW, Shan Q, Fosdick MG, Tremblay MM, Houtman JC, Xue HH, Griffith TS, Peng W, Badovinac VP. Sepsis leads to lasting changes in phenotype and function of memory CD8 T cells. Elife. 10. PMID 34652273 DOI: 10.7554/eLife.70989  1
2021 Shan Q, Li X, Chen X, Zeng Z, Zhu S, Gai K, Peng W, Xue HH. Tcf1 and Lef1 provide constant supervision to mature CD8 T cell identity and function by organizing genomic architecture. Nature Communications. 12: 5863. PMID 34615872 DOI: 10.1038/s41467-021-26159-1  1
2021 Du J, Jing J, Yuan Y, Feng J, Han X, Chen S, Li X, Peng W, Xu J, Ho TV, Jiang X, Chai Y. Arid1a-Plagl1-Hh signaling is indispensable for differentiation-associated cell cycle arrest of tooth root progenitors. Cell Reports. 35: 108964. PMID 33826897 DOI: 10.1016/j.celrep.2021.108964  0.01
2021 Park YK, Lee JE, Yan Z, McKernan K, O'Haren T, Wang W, Peng W, Ge K. Interplay of BAF and MLL4 promotes cell type-specific enhancer activation. Nature Communications. 12: 1630. PMID 33712604 DOI: 10.1038/s41467-021-21893-y  1
2020 Zang C, Wang Y, Peng W. RECOGNICER: A coarse-graining approach for identifying broad domains from ChIP-seq data. Quantitative Biology (Beijing, China). 8: 359-368. PMID 34327037 DOI: 10.1007/s40484-020-0225-2  1
2020 Brennan JA, Chen Q, Gams A, Dyavanapalli J, Mendelowitz D, Peng W, Efimov IR. Evidence of Superior and Inferior Sinoatrial Nodes in the Mammalian Heart. Jacc. Clinical Electrophysiology. 6: 1827-1840. PMID 33357580 DOI: 10.1016/j.jacep.2020.09.012  0.01
2020 Tian Y, Zeng Z, Li X, Wang Y, Chen R, Mattijssen S, Gaidamakov S, Wu Y, Maraia RJ, Peng W, Zhu J. Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation. Nucleic Acids Research. PMID 32735645 DOI: 10.1093/Nar/Gkaa643  1
2020 Li Y, Zhang X, Zhu S, Dejene EA, Peng W, Sepulveda A, Seto E. HDAC10 Regulates Cancer Stem-like Cell Properties in KRAS-driven Lung Adenocarcinoma. Cancer Research. PMID 32540961 DOI: 10.1158/0008-5472.Can-19-3613  1
2019 Zhang Y, Wu X, Kai Y, Lee CH, Cheng F, Li Y, Zhuang Y, Ghaemmaghami J, Chuang KH, Liu Z, Meng Y, Keswani M, Gough NR, Wu X, Zhu W, ... ... Peng W, et al. Secretome profiling identifies neuron-derived neurotrophic factor as a tumor-suppressive factor in lung cancer. Jci Insight. 4. PMID 31852841 DOI: 10.1172/Jci.Insight.129344  1
2019 Xing S, Gai K, Li X, Shao P, Zeng Z, Zhao X, Zhao X, Chen X, Paradee WJ, Meyerholz DK, Peng W, Xue HH. Tcf1 and Lef1 are required for the immunosuppressive function of regulatory T cells. The Journal of Experimental Medicine. PMID 30837262 DOI: 10.1084/Jem.20182010  1
2018 Li F, Zeng Z, Xing S, Gullicksrud JA, Shan Q, Choi J, Badovinac VP, Crotty S, Peng W, Xue HH. Ezh2 programs T differentiation by integrating phosphorylation-dependent activation of Bcl6 and polycomb-dependent repression of p19Arf. Nature Communications. 9: 5452. PMID 30575739 DOI: 10.1038/S41467-018-07853-Z  1
2018 Kai Y, Andricovich J, Zeng Z, Zhu J, Tzatsos A, Peng W. Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features. Nature Communications. 9: 4221. PMID 30310060 DOI: 10.1038/S41467-018-06664-6  1
2018 Sun J, Cai X, Yung MM, Zhou W, Li J, Zhang Y, Li Z, Liu SS, Cheung ANY, Ngan HYS, Li Y, Dai Z, Kai Y, Tzatsos A, Peng W, et al. miR-137 mediates the functional link between c-Myc and EZH2 that regulates cisplatin resistance in ovarian cancer. Oncogene. PMID 30166592 DOI: 10.1038/S41388-018-0459-X  1
2018 Xing S, Shao P, Li F, Zhao X, Seo W, Wheat JC, Ramasamy S, Wang J, Li X, Peng W, Yu S, Liu C, Taniuchi I, Sweetser DA, Xue HH. Tle corepressors are differentially partitioned to instruct CD8 T cell lineage choice and identity. The Journal of Experimental Medicine. PMID 30045946 DOI: 10.1084/Jem.20171514  1
2018 Meng Y, Chen CW, Yung MMH, Sun W, Sun J, Li Z, Li J, Li Z, Zhou W, Liu SS, Cheung ANY, Ngan HYS, Braisted JC, Kai Y, Peng W, et al. DUOXA1-mediated ROS production promotes cisplatin resistance by activating ATR-Chk1 pathway in ovarian cancer. Cancer Letters. PMID 29704517 DOI: 10.1016/J.Canlet.2018.04.029  1
2018 Zhou W, Sun W, Yung MMH, Dai S, Cai Y, Chen CW, Meng Y, Lee JB, Braisted JC, Xu Y, Southall NT, Shinn P, Huang X, Song Z, Chen X, ... ... Peng W, et al. Autocrine activation of JAK2 by IL-11 promotes platinum drug resistance. Oncogene. PMID 29662190 DOI: 10.1038/S41388-018-0238-8  1
2018 Andricovich J, Perkail S, Kai Y, Casasanta N, Peng W, Tzatsos A. Loss of KDM6A Activates Super-Enhancers to Induce Gender-Specific Squamous-like Pancreatic Cancer and Confers Sensitivity to BET Inhibitors. Cancer Cell. 33: 512-526.e8. PMID 29533787 DOI: 10.1016/J.Ccell.2018.02.003  1
2017 Lee JE, Park YK, Park S, Jang Y, Waring N, Dey A, Ozato K, Lai B, Peng W, Ge K. Brd4 binds to active enhancers to control cell identity gene induction in adipogenesis and myogenesis. Nature Communications. 8: 2217. PMID 29263365 DOI: 10.1038/S41467-017-02403-5  1
2017 Gullicksrud JA, Li F, Xing S, Zeng Z, Peng W, Badovinac VP, Harty JT, Xue HH. Differential Requirements for Tcf1 Long Isoforms in CD8(+) and CD4(+) T Cell Responses to Acute Viral Infection. Journal of Immunology (Baltimore, Md. : 1950). PMID 28652395 DOI: 10.4049/Jimmunol.1700595  1
2017 Shan Q, Zeng Z, Xing S, Li F, Hartwig SM, Gullicksrud JA, Kurup SP, Van Braeckel-Budimir N, Su Y, Martin MD, Varga SM, Taniuchi I, Harty JT, Peng W, Badovinac VP, et al. The transcription factor Runx3 guards cytotoxic CD8(+) effector T cells against deviation towards follicular helper T cell lineage. Nature Immunology. PMID 28604718 DOI: 10.1038/Ni.3773  1
2017 Lai B, Lee JE, Jang Y, Wang L, Peng W, Ge K. MLL3/MLL4 are required for CBP/p300 binding on enhancers and super-enhancer formation in brown adipogenesis. Nucleic Acids Research. PMID 28398509 DOI: 10.1093/Nar/Gkx234  1
2017 Huang L, Wang Z, Liu C, Xu C, Mbofung RM, McKenzie JA, Khong H, Hwu P, Peng W. CpG-based immunotherapy impairs antitumor activity of BRAF inhibitors in a B-cell-dependent manner. Oncogene. PMID 28263973 DOI: 10.1038/Onc.2017.35  1
2017 Choi YJ, Lin CP, Risso D, Chen S, Kim TA, Tan MH, Li JB, Wu Y, Chen C, Xuan Z, Macfarlan T, Peng W, Lloyd KC, Kim SY, Speed TP, et al. Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells. Science (New York, N.Y.). PMID 28082412 DOI: 10.1126/Science.Aag1927  0.01
2017 Barski A, Cuddapah S, Kartashov AV, Liu C, Imamichi H, Yang W, Peng W, Lane HC, Zhao K. Rapid Recall Ability of Memory T cells is Encoded in their Epigenome. Scientific Reports. 7: 39785. PMID 28054639 DOI: 10.1038/Srep39785  1
2016 Wang C, Lee JE, Lai B, Macfarlan TS, Xu S, Zhuang L, Liu C, Peng W, Ge K. Enhancer priming by H3K4 methyltransferase MLL4 controls cell fate transition. Proceedings of the National Academy of Sciences of the United States of America. PMID 27698142 DOI: 10.1073/Pnas.1606857113  1
2016 Ni T, Yang W, Han M, Zhang Y, Shen T, Nie H, Zhou Z, Dai Y, Yang Y, Liu P, Cui K, Zeng Z, Tian Y, Zhou B, Wei G, ... ... Peng W, et al. Global intron retention mediated gene regulation during CD4+ T cell activation. Nucleic Acids Research. PMID 27369383 DOI: 10.1093/Nar/Gkw591  1
2016 Xing S, Li F, Zeng Z, Zhao Y, Yu S, Shan Q, Li Y, Phillips FC, Maina PK, Qi HH, Liu C, Zhu J, Pope RM, Musselman CA, Zeng C, ... Peng W, et al. Tcf1 and Lef1 transcription factors establish CD8(+) T cell identity through intrinsic HDAC activity. Nature Immunology. PMID 27111144 DOI: 10.1038/Ni.3456  1
2016 Yu S, Li F, Xing S, Zhao T, Peng W, Xue HH. Hematopoietic and Leukemic Stem Cells Have Distinct Dependence on Tcf1 and Lef1 Transcription Factors. The Journal of Biological Chemistry. PMID 27044748 DOI: 10.1074/Jbc.M116.717801  1
2016 Andricovich J, Kai Y, Peng W, Foudi A, Tzatsos A. Histone demethylase KDM2B regulates lineage commitment in normal and malignant hematopoiesis. The Journal of Clinical Investigation. 126: 905-20. PMID 26808549 DOI: 10.1172/Jci84014  1
2016 Starnes LM, Su D, Pikkupeura LM, Weinert BT, Santos MA, Mund A, Soria R, Cho YW, Pozdnyakova I, Kubec Højfeldt M, Vala A, Yang W, López-Méndez B, Lee JE, Peng W, et al. A PTIP-PA1 subcomplex promotes transcription for IgH class switching independently from the associated MLL3/MLL4 methyltransferase complex. Genes & Development. PMID 26744420 DOI: 10.1101/Gad.268797.115  1
2016 Crompton JG, Narayanan M, Cuddapah S, Roychoudhuri R, Ji Y, Yang W, Patel SJ, Sukumar M, Palmer DC, Peng W, Wang E, Marincola FM, Klebanoff CA, Zhao K, Tsang JS, et al. Lineage relationship of CD8+ T cell subsets is revealed by progressive changes in the epigenetic landscape Cellular and Molecular Immunology. 13: 502-513. DOI: 10.1038/cmi.2015.32  1
2015 Choi YS, Gullicksrud JA, Xing S, Zeng Z, Shan Q, Li F, Love PE, Peng W, Xue HH, Crotty S. LEF-1 and TCF-1 orchestrate TFH differentiation by regulating differentiation circuits upstream of the transcriptional repressor Bcl6. Nature Immunology. PMID 26214741 DOI: 10.1038/Ni.3226  1
2015 Crompton JG, Narayanan M, Cuddapah S, Roychoudhuri R, Ji Y, Yang W, Patel SJ, Sukumar M, Palmer DC, Peng W, Wang E, Marincola FM, Klebanoff CA, Zhao K, Tsang JS, et al. Lineage relationship of CD8(+) T cell subsets is revealed by progressive changes in the epigenetic landscape. Cellular & Molecular Immunology. PMID 25914936 DOI: 10.1038/Cmi.2015.32  1
2014 Jin Q, Zhuang L, Lai B, Wang C, Li W, Dolan B, Lu Y, Wang Z, Zhao K, Peng W, Dent SY, Ge K. Gcn5 and PCAF negatively regulate interferon-β production through HAT-independent inhibition of TBK1. Embo Reports. 15: 1192-201. PMID 25269644 DOI: 10.15252/Embr.201438990  1
2014 Xu S, Grullon S, Ge K, Peng W. Spatial clustering for identification of ChIP-enriched regions (SICER) to map regions of histone methylation patterns in embryonic stem cells. Methods in Molecular Biology (Clifton, N.J.). 1150: 97-111. PMID 24743992 DOI: 10.1007/978-1-4939-0512-6_5  1
2013 Lee JE, Wang C, Xu S, Cho YW, Wang L, Feng X, Baldridge A, Sartorelli V, Zhuang L, Peng W, Ge K. H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation. Elife. 2: e01503. PMID 24368734 DOI: 10.7554/Elife.01503  1
2013 Ni T, Yang Y, Hafez D, Yang W, Kiesewetter K, Wakabayashi Y, Ohler U, Peng W, Zhu J. Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy. Bmc Genomics. 14: 615. PMID 24025092 DOI: 10.1186/1471-2164-14-615  1
2013 Jiang L, Mu J, Zhang Q, Ni T, Srinivasan P, Rayavara K, Yang W, Turner L, Lavstsen T, Theander TG, Peng W, Wei G, Jing Q, Wakabayashi Y, Bansal A, et al. PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum. Nature. 499: 223-7. PMID 23823717 DOI: 10.1038/Nature12361  1
2013 Hawley TS, Riz I, Yang W, Wakabayashi Y, Depalma L, Chang YT, Peng W, Zhu J, Hawley RG. Identification of an ABCB1 (P-glycoprotein)-positive carfilzomib-resistant myeloma subpopulation by the pluripotent stem cell fluorescent dye CDy1. American Journal of Hematology. 88: 265-72. PMID 23475625 DOI: 10.1002/Ajh.23387  1
2013 Wang L, Xu S, Lee JE, Baldridge A, Grullon S, Peng W, Ge K. Histone H3K9 methyltransferase G9a represses PPARγ expression and adipogenesis. The Embo Journal. 32: 45-59. PMID 23178591 DOI: 10.1038/Emboj.2012.306  1
2013 Lee J, Wang C, Xu S, Cho Y, Wang L, Feng X, Baldridge A, Sartorelli V, Zhuang L, Peng W, Ge K. Author response: H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation Elife. DOI: 10.7554/Elife.01503.027  1
2012 Callen E, Faryabi RB, Luckey M, Hao B, Daniel JA, Yang W, Sun HW, Dressler G, Peng W, Chi H, Ge K, Krangel MS, Park JH, Nussenzweig A. The DNA Damage- and Transcription-Associated Protein Paxip1 Controls Thymocyte Development and Emigration Immunity. 37: 971-985. PMID 23159437 DOI: 10.1016/J.Immuni.2012.10.007  1
2012 Hao H, Kim DS, Klocke B, Johnson KR, Cui K, Gotoh N, Zang C, Gregorski J, Gieser L, Peng W, Fann Y, Seifert M, Zhao K, Swaroop A. Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis. Plos Genetics. 8: e1002649. PMID 22511886 DOI: 10.1371/Journal.Pgen.1002649  1
2012 Cowley AW, Nadeau JH, Baccarelli A, Berecek K, Fornage M, Gibbons GH, Harrison DG, Liang M, Nathanielsz PW, O'Connor DT, Ordovas J, Peng W, Soares MB, Szyf M, Tolunay HE, et al. Report of the National Heart, Lung, and Blood Institute Working Group on epigenetics and hypertension. Hypertension. 59: 899-905. PMID 22431584 DOI: 10.1161/Hypertensionaha.111.190116  1
2011 Peng W, Zhao K. An integrated strategy for identification of both sharp and broad peaks from next-generation sequencing data. Genome Biology. 12: 120. PMID 21787381 DOI: 10.1186/Gb-2011-12-7-120  1
2010 Daniel JA, Santos MA, Wang Z, Zang C, Schwab KR, Jankovic M, Filsuf D, Chen HT, Gazumyan A, Yamane A, Cho YW, Sun HW, Ge K, Peng W, Nussenzweig MC, et al. PTIP promotes chromatin changes critical for immunoglobulin class switch recombination Science. 329: 917-923. PMID 20671152 DOI: 10.1126/Science.1187942  1
2010 Wei L, Vahedi G, Sun HW, Watford WT, Takatori H, Ramos HL, Takahashi H, Liang J, Gutierrez-Cruz G, Zang C, Peng W, O'Shea JJ, Kanno Y. Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation. Immunity. 32: 840-51. PMID 20620946 DOI: 10.1016/J.Immuni.2010.06.003  1
2009 Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell. 138: 1019-31. PMID 19698979 DOI: 10.1016/J.Cell.2009.06.049  1
2009 Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nature Genetics. 41: 941-5. PMID 19633671 DOI: 10.1038/Ng.409  1
2009 Araki Y, Wang Z, Zang C, Wood WH, Schones D, Cui K, Roh TY, Lhotsky B, Wersto RP, Peng W, Becker KG, Zhao K, Weng NP. Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells. Immunity. 30: 912-25. PMID 19523850 DOI: 10.1016/J.Immuni.2009.05.006  1
2009 Zang C, Schones DE, Zeng C, Cui K, Zhao K, Peng W. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics (Oxford, England). 25: 1952-8. PMID 19505939 DOI: 10.1093/Bioinformatics/Btp340  1
2009 Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, Schones DE, Peng W, Sun HW, Paul WE, O'Shea JJ, et al. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity. 30: 155-67. PMID 19144320 DOI: 10.1016/J.Immuni.2008.12.009  1
2009 Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell. 4: 80-93. PMID 19128795 DOI: 10.1016/J.Stem.2008.11.011  1
2008 Chen J, Pathak VK, Peng W, Hu WS. Capsid proteins from human immunodeficiency virus type 1 and simian immunodeficiency virus SIVmac can coassemble into mature cores of infectious viruses. Journal of Virology. 82: 8253-61. PMID 18579598 DOI: 10.1128/Jvi.02663-07  1
2008 Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genetics. 40: 897-903. PMID 18552846 DOI: 10.1038/Ng.154  1
2007 Yu Y, Wang G, Simha R, Peng W, Turano F, Zeng C. Pathway switching explains the sharp response characteristic of hypoxia response network. Plos Computational Biology. 3: e171. PMID 17784783 DOI: 10.1371/Journal.Pcbi.0030171  1
2004 Peng W, Levine H, Hwa T, Kessler DA. Analytical study of the effect of recombination on evolution via DNA shuffling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 051911. PMID 15244851 DOI: 10.1103/Physreve.69.051911  1
2003 Peng W, Gerland U, Hwa T, Levine H. Dynamics of competitive evolution on a smooth landscape. Physical Review Letters. 90: 088103. PMID 12633464 DOI: 10.1103/Physrevlett.90.088103  1
2000 Peng W, Goldbart PM. Renormalization-group approach to the vulcanization transition Physical Review E. 61: 3339-3357. PMID 11088108 DOI: 10.1103/Physreve.61.3339  1
1998 Peng W, Castillo HE, Goldbart PM, Zippelius A. Universality and its origins at the amorphous solidification transition Physical Review B - Condensed Matter and Materials Physics. 57: 839-847. DOI: 10.1103/Physrevb.57.839  1
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