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Matthew L. Settles, Ph.D. - Publications

Affiliations: 
2011 University of Idaho, Moscow, ID, United States 
Area:
Bioinformatics Biology, Computer Science
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 de Oliveira Peixoto J, Savoldi IR, Ibelli AMG, Cantão ME, Jaenisch FRF, Giachetto PF, Settles ML, Zanella R, Marchesi JAP, Pandolfi JR, Coutinho LL, Ledur MC. Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens. Bmc Genomics. 20: 1031. PMID 31888477 DOI: 10.1186/s12864-019-6411-9  0.626
2016 Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML. Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest. Genome Announcements. 4. PMID 26798113 DOI: 10.1128/Genomea.01628-15  0.316
2016 Hunter SS, Settles ML, New DD, Parent CE, Gerritsen AT. Mitochondrial Genome Sequence of the Galápagos Endemic Land Snail Naesiotus nux. Genome Announcements. 4. PMID 26798085 DOI: 10.1128/Genomea.01362-15  0.313
2015 Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB. The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards. Molecular Ecology. PMID 26363411 DOI: 10.1111/Mec.13385  0.328
2012 Rosenblum EB, Poorten TJ, Joneson S, Settles M. Substrate-specific gene expression in Batrachochytrium dendrobatidis, the chytrid pathogen of amphibians. Plos One. 7: e49924. PMID 23185485 DOI: 10.1371/Journal.Pone.0049924  0.35
2012 Settles ML, Coram T, Soule T, Robison BD. An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays. Molecular Ecology Resources. 12: 1079-89. PMID 22966828 DOI: 10.1111/1755-0998.12006  0.626
2012 Drew RE, Settles ML, Churchill EJ, Williams SM, Balli S, Robison BD. Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio). Bmc Genomics. 13: 323. PMID 22817472 DOI: 10.1186/1471-2164-13-323  0.331
2012 Minozzi G, Williams JL, Stella A, Strozzi F, Luini M, Settles ML, Taylor JF, Whitlock RH, Zanella R, Neibergs HL. Meta-analysis of two genome-wide association studies of bovine paratuberculosis. Plos One. 7: e32578. PMID 22396781 DOI: 10.1371/Journal.Pone.0032578  0.726
2012 Rosenblum EB, Poorten TJ, Settles M, Murdoch GK. Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species. Molecular Ecology. 21: 3110-20. PMID 22332717 DOI: 10.1111/J.1365-294X.2012.05481.X  0.326
2011 Murdoch BM, Murdoch GK, Settles M, McKay S, Williams JL, Moore SS. Genome-wide scan identifies loci associated with classical BSE occurrence. Plos One. 6: e26819. PMID 22073200 DOI: 10.1371/Journal.Pone.0026819  0.415
2011 Zanella R, Settles ML, McKay SD, Schnabel R, Taylor J, Whitlock RH, Schukken Y, Van Kessel JS, Smith JM, Neibergs HL. Identification of loci associated with tolerance to Johne's disease in Holstein cattle. Animal Genetics. 42: 28-38. PMID 20477805 DOI: 10.1111/J.1365-2052.2010.02076.X  0.705
2011 Bryan JN, Jabbes M, Settles ML. Abstract 4812: Gene promoter and CpG island DNA methylation and gene expression are altered in canine non-Hodgkin lymphoma Cancer Research. 71: 4812-4812. DOI: 10.1158/1538-7445.Am2011-4812  0.345
2010 Murdoch BM, Clawson ML, Yue S, Basu U, McKay S, Settles M, Capoferri R, Laegreid WW, Williams JL, Moore SS. PRNP haplotype associated with classical BSE incidence in European Holstein cattle. Plos One. 5. PMID 20862290 DOI: 10.1371/Journal.Pone.0012786  0.37
2010 Neibergs HL, Settles ML, Whitlock RH, Taylor JF. GSEA-SNP identifies genes associated with Johne's disease in cattle. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 21: 419-25. PMID 20706723 DOI: 10.1007/S00335-010-9278-2  0.643
2010 Clement TM, Savenkova MI, Settles M, Anway MD, Skinner MK. Alterations in the developing testis transcriptome following embryonic vinclozolin exposure. Reproductive Toxicology (Elmsford, N.Y.). 30: 353-64. PMID 20566332 DOI: 10.1016/J.Reprotox.2010.05.086  0.306
2010 Murdoch BM, Clawson ML, Laegreid WW, Stothard P, Settles M, McKay S, Prasad A, Wang Z, Moore SS, Williams JL. A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. Bmc Genetics. 11: 20. PMID 20350325 DOI: 10.1186/1471-2156-11-20  0.415
2010 Coram TE, Huang X, Zhan G, Settles ML, Chen X. Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts. Functional & Integrative Genomics. 10: 383-92. PMID 19937262 DOI: 10.1007/S10142-009-0148-5  0.309
2009 Rosenblum EB, Poorten TJ, Settles M, Murdoch GK, Robert J, Maddox N, Eisen MB. Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus. Plos One. 4: e6494. PMID 19701481 DOI: 10.1371/Journal.Pone.0006494  0.328
2009 Coram TE, Settles ML, Chen X. Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array. Bmc Genomics. 10: 253. PMID 19480707 DOI: 10.1186/1471-2164-10-253  0.334
2009 Settles M, Zanella R, McKay SD, Schnabel RD, Taylor JF, Whitlock R, Schukken Y, Van Kessel JS, Smith JM, Neibergs H. A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle. Animal Genetics. 40: 655-62. PMID 19422364 DOI: 10.1111/J.1365-2052.2009.01896.X  0.723
2008 Robison BD, Drew RE, Murdoch GK, Powell M, Rodnick KJ, Settles M, Stone D, Churchill E, Hill RA, Papasani MR, Lewis SS, Hardy RW. Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio). Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 3: 141-54. PMID 20483215 DOI: 10.1016/J.Cbd.2008.01.001  0.307
2008 Coram TE, Settles ML, Chen X. Transcriptome analysis of high-temperature adult-plant resistance conditioned by Yr39 during the wheat-Puccinia striiformis f. sp. tritici interaction. Molecular Plant Pathology. 9: 479-93. PMID 18705862 DOI: 10.1111/J.1364-3703.2008.00476.X  0.311
2008 Coram TE, Settles ML, Wang M, Chen X. Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 117: 401-11. PMID 18470504 DOI: 10.1007/S00122-008-0784-5  0.383
2005 Settles M, Nathan P, Soule T. Breeding swarms: A new approach to recurrent neural network training Gecco 2005 - Genetic and Evolutionary Computation Conference. 185-192. DOI: 10.1145/1068009.1068038  0.548
2005 Settles M, Soule T. Breeding swarms: A GA/PSO hybrid Gecco 2005 - Genetic and Evolutionary Computation Conference. 161-168. DOI: 10.1145/1068009.1068035  0.546
2003 Settles ML, Soule T. A hybrid GA/PSO to evolve artificial recurrent neural networks Intelligent Engineering Systems Through Artificial Neural Networks. 13: 51-56.  0.556
2003 Settles M, Rodebaugh B, Soule T. Comparison of genetic algorithm and particle swarm optimizer when evolving a recurrent neural network Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2723: 148-149.  0.54
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