| Year |
Citation |
Score |
| 2021 |
Beyerle ER, Dinpajooh M, Ji H, von Hippel PH, Marcus AH, Guenza MG. Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms. Nucleic Acids Research. PMID 33503257 DOI: 10.1093/nar/gkab015 |
1 |
|
| 2019 |
Beyerle ER, Guenza MG. Kinetics analysis of ubiquitin local fluctuations with Markov state modeling of the LE4PD normal modes. The Journal of Chemical Physics. 151: 164119. PMID 31675886 DOI: 10.1063/1.5123513 |
1 |
|
| 2019 |
Dinpajooh M, Guenza MG. Correction to "On the Density Dependence of the Integral Equation Coarse-Graining Effective Potential". The Journal of Physical Chemistry. B. 123: 2466. PMID 30821979 DOI: 10.1021/acs.jpcb.9b01664 |
1 |
|
| 2019 |
Dinpajooh M, Guenza MG. Can pure polymer liquids be represented at two different resolutions simultaneously? The Journal of Chemical Physics. 151: 061102. DOI: 10.1063/1.5115791 |
0.01 |
|
| 2018 |
Guenza MG, Dinpajooh M, McCarty J, Lyubimov IY. Accuracy, Transferability, and Efficiency of Coarse-Grained Models of Molecular Liquids. The Journal of Physical Chemistry. B. 122: 10257-10278. PMID 30153027 DOI: 10.1021/acs.jpcb.8b06687 |
0.01 |
|
| 2018 |
Dinpajooh M, Guenza MG. Coarse-graining simulation approaches for polymer melts: the effect of potential range on computational efficiency. Soft Matter. PMID 30070292 DOI: 10.1039/c8sm00868j |
1 |
|
| 2018 |
Beyerle ER, Guenza M. A Comparison of Collective Coordinates for Analyzing Protein Dynamics Biophysical Journal. 114: 232a-233a. DOI: 10.1016/j.bpj.2017.11.1294 |
0.01 |
|
| 2017 |
Dinpajooh M, Guenza MG. On the Density Dependence of the Integral Equation Coarse-Graining Effective Potential. The Journal of Physical Chemistry. B. PMID 29144758 DOI: 10.1021/acs.jpcb.7b10494 |
1 |
|
| 2017 |
Copperman J, Dinpajooh M, Beyerle ER, Guenza MG. Universality and Specificity in Protein Fluctuation Dynamics. Physical Review Letters. 119: 158101. PMID 29077439 DOI: 10.1103/PhysRevLett.119.158101 |
1 |
|
| 2017 |
Romano PG, Guenza MG. GRadient Adaptive Decomposition (GRAD) Method: Optimized Refinement Along Macrostate Borders in Markov State Models. Journal of Chemical Information and Modeling. 57: 2729-2740. PMID 29035546 DOI: 10.1021/acs.jcim.7b00261 |
0.01 |
|
| 2017 |
deLorimier E, Hinman MN, Copperman J, Datta K, Guenza M, Berglund JA. Pseudouridine modification inhibits muscleblind-like 1 (MBNL1) binding to CCUG repeats and minimally structured RNA through reduced RNA flexibility. The Journal of Biological Chemistry. PMID 28130447 DOI: 10.1074/jbc.M116.770768 |
1 |
|
| 2016 |
Ozog D, Malony AD, Guenza M. The UA?CG Workflow: High Performance Molecular Dynamics of Coarse-Grained Polymers Proceedings - 24th Euromicro International Conference On Parallel, Distributed, and Network-Based Processing, Pdp 2016. 272-279. DOI: 10.1109/PDP.2016.127 |
1 |
|
| 2016 |
Copperman J, Guenza MG. Mode localization in the cooperative dynamics of protein recognition Journal of Chemical Physics. 145. DOI: 10.1063/1.4954506 |
1 |
|
| 2016 |
Jose D, Michael MM, Romano P, Camel BR, Meze KH, Johnson NP, Guenza M, Marcus AH, von Hippel PH. Binding of the Single-Stranded DNA Binding Protein (gp32) of T4 Bacteriophage Induces Position-Specific Local Conformational Changes in DNA Lattices that can be Monitored by Fluorescent Probes Biophysical Journal. 110: 239a. DOI: 10.1016/J.BPJ.2015.11.1316 |
0.01 |
|
| 2015 |
Clark AJ, McCarty J, Guenza MG. Comment on "Systematic and simulation-free coarse graining of homopolymer melts: A structure-based study" [J. Chem. Phys. 142, 054905 (2015)]. The Journal of Chemical Physics. 143: 067101. PMID 26277169 DOI: 10.1063/1.4928457 |
1 |
|
| 2015 |
Copperman J, Guenza MG. Coarse-Grained Langevin Equation for Protein Dynamics: Global Anisotropy and a Mode Approach to Local Complexity Journal of Physical Chemistry B. 119: 9195-9211. PMID 25356856 DOI: 10.1021/jp509473z |
1 |
|
| 2015 |
Guenza MG. Advancements in multi scale modeling: Adaptive resolution simulations and related issues European Physical Journal: Special Topics. 224: 2491-2495. DOI: 10.1140/epjst/e2015-02529-1 |
1 |
|
| 2015 |
Guenza MG. Structural and thermodynamic consistency in coarse-grained models of macromolecules Journal of Physics: Conference Series. 640. DOI: 10.1088/1742-6596/640/1/012009 |
1 |
|
| 2015 |
Copperman J, Guenza MG. Predicting protein dynamics from structural ensembles Journal of Chemical Physics. 143. DOI: 10.1063/1.4935575 |
1 |
|
| 2015 |
Ozog D, McCarty J, Gossett G, Malony AD, Guenza M. Fast equilibration of coarse-grained polymeric liquids Journal of Computational Science. 9: 33-38. DOI: 10.1016/j.jocs.2015.04.015 |
1 |
|
| 2014 |
Guenza MG. Localization of chain dynamics in entangled polymer melts Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 89. PMID 25353822 DOI: 10.1103/PhysRevE.89.052603 |
1 |
|
| 2014 |
deLorimier E, Coonrod LA, Copperman J, Taber A, Reister EE, Sharma K, Todd PK, Guenza MG, Berglund JA. Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model. Nucleic Acids Research. 42: 12768-78. PMID 25303993 DOI: 10.1093/nar/gku941 |
1 |
|
| 2014 |
McCarty J, Clark AJ, Copperman J, Guenza MG. An analytical coarse-graining method which preserves the free energy, structural correlations, and thermodynamic state of polymer melts from the atomistic to the mesoscale. The Journal of Chemical Physics. 140: 204913. PMID 24880331 DOI: 10.1063/1.4875923 |
1 |
|
| 2014 |
Guenza MG. Entangled dynamics of polyethylene melts and tracer dynamics Aip Conference Proceedings. 1599: 22-25. DOI: 10.1063/1.4876768 |
1 |
|
| 2013 |
Clark AJ, McCarty J, Guenza MG. Effective potentials for representing polymers in melts as chains of interacting soft particles. The Journal of Chemical Physics. 139: 124906. PMID 24089803 DOI: 10.1063/1.4821818 |
1 |
|
| 2013 |
Lyubimov IY, Guenza MG. Theoretical reconstruction of realistic dynamics of highly coarse-grained cis-1,4-polybutadiene melts. The Journal of Chemical Physics. 138: 12A546. PMID 23556797 DOI: 10.1063/1.4792367 |
1 |
|
| 2013 |
Copperman JT, Guenza MG. In Silico Insight into Transitional Structures and Barrier-Crossing Dynamics of DNA and RNA Oligomers Biophysical Journal. 104: 199a. DOI: 10.1016/j.bpj.2012.11.1122 |
0.01 |
|
| 2012 |
Clark AJ, McCarty J, Lyubimov IY, Guenza MG. Thermodynamic consistency in variable-level coarse graining of polymeric liquids. Physical Review Letters. 109: 168301. PMID 23215138 DOI: 10.1103/PhysRevLett.109.168301 |
1 |
|
| 2012 |
McCarty J, Clark AJ, Lyubimov IY, Guenza MG. Thermodynamic consistency between analytic integral equation theory and coarse-grained molecular dynamics simulations of homopolymer melts Macromolecules. 45: 8482-8493. DOI: 10.1021/ma301502w |
1 |
|
| 2011 |
Lyubimov I, Guenza MG. First-principle approach to rescale the dynamics of simulated coarse-grained macromolecular liquids Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 84. DOI: 10.1103/PhysRevE.84.031801 |
1 |
|
| 2010 |
Lyubimov IY, McCarty J, Clark A, Guenza MG. Analytical rescaling of polymer dynamics from mesoscale simulations. The Journal of Chemical Physics. 132: 224903. PMID 20550415 DOI: 10.1063/1.3450301 |
1 |
|
| 2010 |
McCarty J, Guenza MG. Multiscale modeling of binary polymer mixtures: Scale bridging in the athermal and thermal regime Journal of Chemical Physics. 133. DOI: 10.1063/1.3483236 |
1 |
|
| 2010 |
Guenza MG. Intermolecular effects in the dynamics of polymer melts: Interplay of cooperative dynamics and entanglements Aip Conference Proceedings. 1255: 114-116. DOI: 10.1063/1.3455548 |
1 |
|
| 2010 |
Clark AJ, Guenza MG. Mapping of polymer melts onto liquids of soft-colloidal chains Journal of Chemical Physics. 132. DOI: 10.1063/1.3292013 |
1 |
|
| 2010 |
McCarty J, Lyubimov IY, Guenza MG. Effective soft-core potentials and mesoscopic simulations of binary polymer mixtures Macromolecules. 43: 3964-3979. DOI: 10.1021/ma100052z |
1 |
|
| 2009 |
McCarty J, Lyubimov IY, Guenza MG. Multiscale modeling of coarse-grained macromolecular liquids. The Journal of Physical Chemistry. B. 113: 11876-86. PMID 19678631 DOI: 10.1021/jp905071w |
1 |
|
| 2008 |
Zamponi M, Wischnewski A, Monkenbusch M, Willner L, Richter D, Falus P, Farago B, Guenza MG. Cooperative dynamics in homopolymer melts: a comparison of theoretical predictions with neutron spin echo experiments. The Journal of Physical Chemistry. B. 112: 16220-9. PMID 19072142 DOI: 10.1021/jp807035z |
1 |
|
| 2008 |
Guenza MG. Theoretical models for bridging timescales in polymer dynamics Journal of Physics Condensed Matter. 20. DOI: 10.1088/0953-8984/20/03/033101 |
1 |
|
| 2008 |
Debnath P, Guenza MG. Cooperative dynamics in polymer melts from the unentangled to the entangled regime Philosophical Magazine. 88: 4131-4136. DOI: 10.1080/14786430802464255 |
1 |
|
| 2007 |
Sambriski EJ, Guenza MG. Theoretical coarse-graining approach to bridge length scales in diblock copolymer liquids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 051801. PMID 18233675 DOI: 10.1103/PhysRevE.76.051801 |
1 |
|
| 2007 |
Caballero-Manrique E, Bray JK, Deutschman WA, Dahlquist FW, Guenza MG. A theory of protein dynamics to predict NMR relaxation. Biophysical Journal. 93: 4128-40. PMID 17766356 DOI: 10.1529/biophysj.107.111849 |
1 |
|
| 2007 |
Sambriski EJ, Yatsenko G, Nemirovskaya MA, Guenza MG. Bridging length scales in polymer melt relaxation for macromolecules with specific local structures Journal of Physics Condensed Matter. 19. DOI: 10.1088/0953-8984/19/20/205115 |
1 |
|
| 2006 |
Sambriski EJ, Yatsenko G, Nemirovskaya MA, Guenza MG. Analytical coarse-grained description for polymer melts. The Journal of Chemical Physics. 125: 234902. PMID 17190572 DOI: 10.1063/1.2404669 |
1 |
|
| 2006 |
Fink MC, Adair KV, Guenza MG, Marcus AH. Translational diffusion of fluorescent proteins by molecular fourier imaging correlation spectroscopy. Biophysical Journal. 91: 3482-98. PMID 16920833 DOI: 10.1529/biophysj.106.085712 |
1 |
|
| 2005 |
Yatsenko G, Sambriski EJ, Guenza MG. Coarse-grained description of polymer blends as interacting soft-colloidal particles. The Journal of Chemical Physics. 122: 54907. PMID 15740353 DOI: 10.1063/1.1835271 |
1 |
|
| 2004 |
Yatsenko G, Sambriski EJ, Nemirovskaya MA, Guenza M. Analytical soft-core potentials for macromolecular fluids and mixtures. Physical Review Letters. 93: 257803. PMID 15697944 DOI: 10.1103/PhysRevLett.93.257803 |
1 |
|
| 2002 |
Knowles MK, Guenza MG, Capaldi RA, Marcus AH. Cytoskeletal-assisted dynamics of the mitochondrial reticulum in living cells. Proceedings of the National Academy of Sciences of the United States of America. 99: 14772-7. PMID 12417764 DOI: 10.1073/pnas.232346999 |
1 |
|
| 2002 |
Guenza MG. Cooperative dynamics in polymer liquids Acs Symposium Series. 820: 92-105. |
1 |
|
| 2001 |
Guenza M. Cooperative dynamics in unentangled polymer fluids. Physical Review Letters. 88: 025901. PMID 11801026 DOI: 10.1103/PhysRevLett.88.025901 |
0.28 |
|
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