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Krishna P. Neupane, Ph.D. - Publications

Affiliations: 
2009 University of Miami, Coral Gables, FL 
Area:
Condensed Matter Physics, Electricity and Magnetism Physics, Molecular Physics
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Hoffer NQ, Neupane K, Woodside MT. Observing the base-by-base search for native structure along transition paths during the folding of single nucleic acid hairpins. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34853166 DOI: 10.1073/pnas.2101006118  0.368
2019 Halma MTJ, Ritchie DB, Cappellano TR, Neupane K, Woodside MT. Complex dynamics under tension in a high-efficiency frameshift stimulatory structure. Proceedings of the National Academy of Sciences of the United States of America. PMID 31409714 DOI: 10.1073/Pnas.1905258116  0.375
2019 Hoffer NQ, Neupane K, Pyo AGT, Woodside MT. Measuring the average shape of transition paths during the folding of a single biological molecule. Proceedings of the National Academy of Sciences of the United States of America. PMID 30952784 DOI: 10.1073/Pnas.1816602116  0.453
2018 Pyo AGT, Hoffer NQ, Neupane K, Woodside MT. Transition-path properties for folding reactions in the limit of small barriers. The Journal of Chemical Physics. 149: 115101. PMID 30243275 DOI: 10.1063/1.5046692  0.414
2018 Neupane K, Hoffer NQ, Woodside MT. Measuring the Local Velocity along Transition Paths during the Folding of Single Biological Molecules. Physical Review Letters. 121: 018102. PMID 30028173 DOI: 10.1103/Physrevlett.121.018102  0.423
2018 Neupane K, Hoffer NQ, Woodside MT. Testing Kinetic Identities Involving Transition-Path Properties Using Single-Molecule Folding Trajectories. The Journal of Physical Chemistry. B. PMID 30004229 DOI: 10.1021/Acs.Jpcb.8B05355  0.443
2018 Hoffer NQ, Neupane K, Woodside MT. Testing Kinetic Identities using Measurements of Transition Paths in Single-Molecule Folding Trajectories Biophysical Journal. 114: 168a-169a. DOI: 10.1016/J.Bpj.2017.11.942  0.414
2017 Neupane K, Wang F, Woodside MT. Direct measurement of sequence-dependent transition path times and conformational diffusion in DNA duplex formation. Proceedings of the National Academy of Sciences of the United States of America. PMID 28115714 DOI: 10.1073/Pnas.1611602114  0.42
2017 Hoffer NQ, Neupane K, Woodside MT. Direct Observation of Transition-State Dynamics during Folding Reactions Biophysical Journal. 112: 166a. DOI: 10.1016/J.Bpj.2016.11.913  0.475
2016 Neupane K, Woodside MT. Quantifying Instrumental Artifacts in Folding Kinetics Measured by Single-Molecule Force Spectroscopy. Biophysical Journal. PMID 27369870 DOI: 10.1016/J.Bpj.2016.06.011  0.397
2016 Gupta AN, Neupane K, Rezajooei N, Cortez LM, Sim VL, Woodside MT. Pharmacological chaperone reshapes the energy landscape for folding and aggregation of the prion protein. Nature Communications. 7: 12058. PMID 27346148 DOI: 10.1038/Ncomms12058  0.385
2016 Neupane K, Foster DA, Dee DR, Yu H, Wang F, Woodside MT. Direct observation of transition paths during the folding of proteins and nucleic acids. Science (New York, N.Y.). 352: 239-242. PMID 27124461 DOI: 10.1126/Science.Aad0637  0.468
2016 Neupane K, Manuel AP, Woodside MT. Protein folding trajectories can be described quantitatively by one-dimensional diffusion over measured energy landscapes Nature Physics. DOI: 10.1038/Nphys3677  0.412
2016 Neupane KP, Manuel AP, Lambert J, Woodside M. Testing the Physical Theory of Folding as Diffusive Motion over an Energy Landscape using Transition Path Analysis of Single-Molecule Folding Trajectories Biophysical Journal. 110: 194a. DOI: 10.1016/J.Bpj.2015.11.1080  0.452
2015 Neupane K, Manuel AP, Lambert J, Woodside MT. Transition-Path Probability as a Test of Reaction-Coordinate Quality Reveals DNA Hairpin Folding Is a One-Dimensional Diffusive Process. The Journal of Physical Chemistry Letters. 6: 1005-10. PMID 26262860 DOI: 10.1021/Acs.Jpclett.5B00176  0.388
2015 Neupane KP, Gupta AN, Rezajooei N, Woodside MT. Anti-Prion Ligand Binding Promotes Native PrP Folding Over Misfolding at the Single Molecule Level Biophysical Journal. 108: 204a. DOI: 10.1016/J.Bpj.2014.11.1127  0.365
2014 Zhou S, Neupane K, Nastishin YA, Baldwin AR, Shiyanovskii SV, Lavrentovich OD, Sprunt S. Elasticity, viscosity, and orientational fluctuations of a lyotropic chromonic nematic liquid crystal disodium cromoglycate. Soft Matter. 10: 6571-81. PMID 25043812 DOI: 10.1039/C4Sm00772G  0.306
2014 Solanki A, Neupane K, Woodside MT. Single-molecule force spectroscopy of rapidly fluctuating, marginally stable structures in the intrinsically disordered protein α-synuclein. Physical Review Letters. 112: 158103. PMID 24785077 DOI: 10.1103/Physrevlett.112.158103  0.43
2014 Neupane K, Solanki A, Sosova I, Belov M, Woodside MT. Diverse metastable structures formed by small oligomers of α-synuclein probed by force spectroscopy. Plos One. 9: e86495. PMID 24475132 DOI: 10.1371/Journal.Pone.0086495  0.362
2013 Hoffmann A, Neupane K, Woodside MT. Single-molecule assays for investigating protein misfolding and aggregation. Physical Chemistry Chemical Physics : Pccp. 15: 7934-48. PMID 23612887 DOI: 10.1039/C3Cp44564J  0.329
2013 Neupane K, Yu H, Ritchie D, Gupta AN, Liu X, Foster DA, Wang F, Sosova I, Brigley AM, Woodside MT. Transition Path Times for the Folding of Nucleic Acids and Proteins Determined from Experimentally-Reconstructed Energy Landscape Profiles Biophysical Journal. 104: 165a. DOI: 10.1016/J.Bpj.2012.11.932  0.468
2012 Neupane K, Ritchie DB, Yu H, Foster DA, Wang F, Woodside MT. Transition path times for nucleic Acid folding determined from energy-landscape analysis of single-molecule trajectories. Physical Review Letters. 109: 068102. PMID 23006308 DOI: 10.1103/Physrevlett.109.068102  0.427
2012 Yu H, Gupta AN, Liu X, Neupane K, Brigley AM, Sosova I, Woodside MT. Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates. Proceedings of the National Academy of Sciences of the United States of America. 109: 14452-7. PMID 22908253 DOI: 10.1073/Pnas.1206190109  0.471
2012 Yu H, Liu X, Neupane K, Gupta AN, Brigley AM, Solanki A, Sosova I, Woodside MT. Direct observation of multiple misfolding pathways in a single prion protein molecule. Proceedings of the National Academy of Sciences of the United States of America. 109: 5283-8. PMID 22421432 DOI: 10.1073/Pnas.1107736109  0.42
2012 Neupane KP, Solanki A, Sosova I, Belov M, Woodside M. Force Spectroscopy of α-Synuclein Oligomers Reveals Rapid Formation of Stable Structures Biophysical Journal. 102: 629a-630a. DOI: 10.1016/J.Bpj.2011.11.3429  0.333
2012 Liu X, Yu H, Gupta AN, Neupane K, Brigley AM, Sosova I, Woodside MP. Reconstruction of the Energy Landscape Profile for Native Folding of Thepprion Protein from Single-Molecule Force Spectroscopy Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.324  0.43
2011 Neupane K, Yu H, Foster DA, Wang F, Woodside MT. Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism. Nucleic Acids Research. 39: 7677-87. PMID 21653559 DOI: 10.1093/Nar/Gkr305  0.398
2011 Gupta AN, Vincent A, Neupane K, Yu H, Wang F, Woodside MT. Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements Nature Physics. 7: 631-634. DOI: 10.1038/Nphys2022  0.4
2011 Vincent A, Gupta AN, Neupane K, Yu H, Woodside M. Experimental Validation of Free Energy Landscape Reconstructions from Non-Equilibrium Single-Molecule Pulling Experiments Biophysical Journal. 100: 484a. DOI: 10.1016/J.Bpj.2010.12.2836  0.442
2011 Neupane KP, Yu H, Foster DA, Wang F, Woodside MT. Force Spectroscopy of Add Adenine Riboswitch Aptamer Folding Reveals Multiple Intermediate and Misfolded States Biophysical Journal. 100: 483a. DOI: 10.1016/J.Bpj.2010.12.2830  0.398
2009 Neupane KP, Neumeier JJ, Cohn JL. Anisotropic in-plane strain and transport in epitaxial Nd 0.2Sr0.8MnO3 thin films Journal of Applied Physics. 106. DOI: 10.1063/1.3269698  0.472
2008 Wiant D, Neupane K, Sharma S, Gleeson JT, Sprunt S, Jákli A, Pradhan N, Iannacchione G. Observation of a possible tetrahedratic phase in a bent-core liquid crystal. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 061701. PMID 18643281 DOI: 10.1103/Physreve.77.061701  0.302
2006 Neupane K, Kang SW, Sharma S, Carney D, Meyer T, Mehl GH, Allender DW, Kumar S, Sprunt S. Dynamic light scattering study of biaxial ordering in a thermotropic liquid crystal. Physical Review Letters. 97: 207802. PMID 17155716 DOI: 10.1103/Physrevlett.97.207802  0.313
2006 Wiant D, Stojadinovic S, Neupane K, Sharma S, Fodor-Csorba K, Jákli A, Gleeson JT, Sprunt S. Critical behavior at the isotropic-to-nematic phase transition in a bent-core liquid crystal. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 030703. PMID 16605491 DOI: 10.1103/Physreve.73.030703  0.356
2006 Neupane KP, Cohn JL, Terashita H, Neumeier JJ. Doping dependence of polaron hopping energies in La1-x Cax MnO3 (0≤x≤0.15) Physical Review B - Condensed Matter and Materials Physics. 74. DOI: 10.1103/Physrevb.74.144428  0.505
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