Nathan P. Manes, Ph.D. - Publications

2004 Stony Brook University, Stony Brook, NY, United States 
General Biophysics, Biochemistry, Molecular Biology

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Manes NP, Nita-Lazar A. Molecular Mechanisms of the Toll-Like Receptor, STING, MAVS, Inflammasome, and Interferon Pathways. Msystems. e0033621. PMID 34184910 DOI: 10.1128/mSystems.00336-21  0.01
2021 Gillen J, Ondee T, Gurusamy D, Issara-Amphorn J, Manes NP, Yoon SH, Leelahavanichkul A, Nita-Lazar A. LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome. Biomolecules. 11. PMID 33513762 DOI: 10.3390/biom11020164  0.01
2020 Bansal R, Khan MM, Dasari S, Verma I, Goodlett DR, Manes NP, Nita-Lazar A, Sharma SP, Kumar A, Singh N, Chakraborti A, Gupta V, Dogra MR, Ram J, Gupta A. Proteomic profile of vitreous in patients with tubercular uveitis. Tuberculosis (Edinburgh, Scotland). 126: 102036. PMID 33359883 DOI: 10.1016/  0.01
2020 Daniels CM, Kaplan PR, Bishof I, Bradfield C, Tucholski T, Nuccio AG, Manes NP, Katz S, Fraser IDC, Nita-Lazar A. The dynamic ADP-ribosylome, phosphoproteome, and interactome in LPS-activated macrophages. Journal of Proteome Research. PMID 32529831 DOI: 10.1021/Acs.Jproteome.0C00261  0.01
2019 Khan MM, Ernst O, Manes NP, Oyler BL, Fraser IDC, Goodlett DR, Nita-Lazar A. Multi-Omics Strategies Uncover Host-Pathogen Interactions. Acs Infectious Diseases. PMID 30857388 DOI: 10.1021/Acsinfecdis.9B00080  0.01
2018 Khan MM, Koppenol-Raab M, Kuriakose M, Manes NP, Goodlett DR, Nita-Lazar A. Host-pathogen dynamics through targeted secretome analysis of stimulated macrophages. Journal of Proteomics. PMID 29572161 DOI: 10.1016/J.Jprot.2018.03.016  0.01
2018 Manes NP, Nita-Lazar A. Application of targeted mass spectrometry in bottom-up proteomics for systems biology research. Journal of Proteomics. PMID 29452276 DOI: 10.1016/J.Jprot.2018.02.008  0.01
2017 Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A. Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota. Msystems. 2. PMID 29085914 DOI: 10.1128/mSystems.00107-17  0.01
2017 Koppenol-Raab M, Sjoelund VH, Manes NP, Gottschalk RA, Dutta B, Benet ZL, Fraser ID, Nita-Lazar A. Proteome and secretome analysis reveals differential post-transcriptional regulation of Toll-like receptor responses. Molecular & Cellular Proteomics : McP. PMID 28235783 DOI: 10.1074/Mcp.M116.064261  0.01
2016 Manes NP, Nita-Lazar A. The development of SRM assays is transforming proteomics research. Proteomics. PMID 27718317 DOI: 10.1002/Pmic.201600366  0.01
2015 Manes NP, Mann JM, Nita-Lazar A. Selected Reaction Monitoring Mass Spectrometry for Absolute Protein Quantification. Journal of Visualized Experiments : Jove. e52959. PMID 26325288 DOI: 10.3791/52959  1
2015 Manes NP, Angermann BR, Koppenol-Raab M, An E, Sjoelund VH, Sun J, Ishii M, Germain RN, Meier-Schellersheim M, Nita-Lazar A. Targeted Proteomics-Driven Computational Modeling of Macrophage S1P Chemosensing. Molecular & Cellular Proteomics : McP. 14: 2661-81. PMID 26199343 DOI: 10.1074/Mcp.M115.048918  1
2014 An E, Narayanan M, Manes NP, Nita-Lazar A. Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling. Molecular & Cellular Proteomics : McP. 13: 2687-704. PMID 25044017 DOI: 10.1074/Mcp.M113.034371  1
2011 Chung MC, Tonry JH, Narayanan A, Manes NP, Mackie RS, Gutting B, Mukherjee DV, Popova TG, Kashanchi F, Bailey CL, Popov SG. Bacillus anthracis interacts with plasmin(ogen) to evade C3b-dependent innate immunity. Plos One. 6: e18119. PMID 21464960 DOI: 10.1371/Journal.Pone.0018119  1
2011 Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF, Liotta LA, Popov SG. Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry. Molecular & Cellular Proteomics : McP. 10: M110.000927. PMID 21189417 DOI: 10.1074/Mcp.M110.000927  1
2011 Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD. Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry. Journal of Proteome Research. 10: 923-31. PMID 21175198 DOI: 10.1021/Pr100848A  1
2010 Brown JN, Estep RD, Lopez-Ferrer D, Brewer HM, Clauss TR, Manes NP, O'Connor M, Li H, Adkins JN, Wong SW, Smith RD. Characterization of macaque pulmonary fluid proteome during monkeypox infection: dynamics of host response. Molecular & Cellular Proteomics : McP. 9: 2760-71. PMID 20736407 DOI: 10.1074/Mcp.M110.001875  1
2010 Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F. Performing comparative peptidomics analyses of Salmonella from different growth conditions. Methods in Molecular Biology (Clifton, N.J.). 615: 13-27. PMID 20013197 DOI: 10.1007/978-1-60761-535-4_2  1
2008 Mottaz-Brewer HM, Norbeck AD, Adkins JN, Manes NP, Ansong C, Shi L, Rikihisa Y, Kikuchi T, Wong SW, Estep RD, Heffron F, Pasa-Tolic L, Smith RD. Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems. Journal of Biomolecular Techniques : Jbt. 19: 285-95. PMID 19183792  1
2008 Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F. Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella. Future Microbiology. 3: 625-34. PMID 19072180 DOI: 10.2217/17460913.3.6.625  1
2008 Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. A computational strategy to analyze label-free temporal bottom-up proteomics data. Journal of Proteome Research. 7: 2595-604. PMID 18442284 DOI: 10.1021/Pr0704837  1
2008 Du X, Yang F, Manes NP, Stenoien DL, Monroe ME, Adkins JN, States DJ, Purvine SO, Camp DG, Smith RD. Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications. Journal of Proteome Research. 7: 2195-203. PMID 18422353 DOI: 10.1021/Pr070510T  1
2008 Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TR, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD. Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions. Journal of Proteome Research. 7: 960-8. PMID 18205298 DOI: 10.1021/Pr070432+  1
2007 Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JS, Metz TO, Adkins JN, Smith RD, Heffron F. Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics. Molecular & Cellular Proteomics : McP. 6: 717-27. PMID 17228056 DOI: 10.1074/Mcp.M600282-Mcp200  1
2006 Shi L, Adkins JN, Coleman JR, Schepmoes AA, Dohnkova A, Mottaz HM, Norbeck AD, Purvine SO, Manes NP, Smallwood HS, Wang H, Forbes J, Gros P, Uzzau S, Rodland KD, et al. Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages. The Journal of Biological Chemistry. 281: 29131-40. PMID 16893888 DOI: 10.1074/Jbc.M604640200  1
2006 Kim SG, Manes NP, El-Maghrabi MR, Lee YH. Crystal structure of the hypoxia-inducible form of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB3): a possible new target for cancer therapy. The Journal of Biological Chemistry. 281: 2939-44. PMID 16316985 DOI: 10.1074/Jbc.M511019200  1
2005 Manes NP, El-Maghrabi MR. The kinase activity of human brain 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase is regulated via inhibition by phosphoenolpyruvate. Archives of Biochemistry and Biophysics. 438: 125-36. PMID 15896703 DOI: 10.1016/J.Abb.2005.04.011  1
2001 El-Maghrabi M, Noto F, Wu N, Manes N. 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase: suiting structure to need, in a family of tissue-specific enzymes. Current Opinion in Clinical Nutrition and Metabolic Care. 4: 411-418. PMID 11568503 DOI: 10.1097/00075197-200109000-00012  0.01
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