Deo R. Singh, Ph.D. - Related publications

Affiliations: 
2012 Physics University of Wisconsin-Milwaukee, Milwaukee, WI 
Area:
General Biophysics, General Physics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Baldering TN, Karathanasis C, Harwardt MIE, Freund P, Meurer M, Rahm JV, Knop M, Dietz MS, Heilemann M. CRISPR/Cas12a-mediated labeling of MET receptor enables quantitative single-molecule imaging of endogenous protein organization and dynamics. Iscience. 24: 101895. PMID 33364584 DOI: 10.1016/j.isci.2020.101895   
2021 Fischer LS, Klingner C, Schlichthaerle T, Strauss MT, Böttcher R, Fässler R, Jungmann R, Grashoff C. Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion. Nature Communications. 12: 919. PMID 33568673 DOI: 10.1038/s41467-021-21142-2   
2021 Wolf P, Gavins G, Beck-Sickinger A, Seitz O. Strategies for site-specific labeling of receptor proteins on surfaces of living cells using genetically encoded peptide tags. Chembiochem : a European Journal of Chemical Biology. PMID 33428317 DOI: 10.1002/cbic.202000797   
2021 Gruebele M, Pielak GJ. Dynamical spectroscopy and microscopy of proteins in cells. Current Opinion in Structural Biology. 70: 1-7. PMID 33662744 DOI: 10.1016/j.sbi.2021.02.001   
2021 Işbilir A, Serfling R, Möller J, Thomas R, De Faveri C, Zabel U, Scarselli M, Beck-Sickinger AG, Bock A, Coin I, Lohse MJ, Annibale P. Determination of G-protein-coupled receptor oligomerization by molecular brightness analyses in single cells. Nature Protocols. PMID 33514946 DOI: 10.1038/s41596-020-00458-1   
2021 Murakoshi H. Optogenetic Imaging of Protein Activity Using Two-Photon Fluorescence Lifetime Imaging Microscopy. Advances in Experimental Medicine and Biology. 1293: 295-308. PMID 33398821 DOI: 10.1007/978-981-15-8763-4_18   
2021 Zhang H, Gong W, Wu S, Perrett S. Studying protein folding in health and disease using biophysical approaches. Emerging Topics in Life Sciences. PMID 33660767 DOI: 10.1042/ETLS20200317   
2021 Herrera NG, Morano NC, Celikgil A, Georgiev GI, Malonis RJ, Lee JH, Tong K, Vergnolle O, Massimi AB, Yen LY, Noble AJ, Kopylov M, Bonanno JB, Garrett-Thomson SC, Hayes DB, et al. Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis. Acs Omega. 6: 85-102. PMID 33458462 DOI: 10.1021/acsomega.0c03512   
2021 Chen M, Horn HT, Wen T, Cryns VL, Anderson RA. Assessing In Situ Phosphoinositide-Protein Interactions Through Fluorescence Proximity Ligation Assay in Cultured Cells. Methods in Molecular Biology (Clifton, N.J.). 2251: 133-142. PMID 33481236 DOI: 10.1007/978-1-0716-1142-5_9   
2021 Tan KT, Lin KY, Lam CH, Lin XH, Hsu JI, Fan SY, Gupta NK, Lin YC, Tee BK, Li JP, Chen JK. Improved Stabilities of Labeling Probes for the Selective Modification of Endogenous Proteins in Living Cells and In Vivo. Chemistry, An Asian Journal. PMID 33629493 DOI: 10.1002/asia.202100060   
2021 Pedicini L, Wiktor SD, Simmons KJ, Money A, McKeown L. Affinity-based proteomics reveals novel binding partners for Rab46 in endothelial cells. Scientific Reports. 11: 4054. PMID 33603063 DOI: 10.1038/s41598-021-83560-y   
2021 Hu Y, Cheng K, He L, Zhang X, Jiang B, Jiang L, Li C, Wang G, Yang Y, Liu M. NMR-Based Methods for Protein Analysis. Analytical Chemistry. PMID 33439619 DOI: 10.1021/acs.analchem.0c03830   
2021 Panigrahi R, Glover JNM. Structural insights into DNA double-strand break signaling. The Biochemical Journal. 478: 135-156. PMID 33439989 DOI: 10.1042/BCJ20200066   
2021 Skruber K, Read TA, Vitriol EA. Delivering defined amounts of purified protein with high precision into living cells. Star Protocols. 2: 100272. PMID 33511357 DOI: 10.1016/j.xpro.2020.100272   
2021 Liu M, Van Voorhis WC, Quinn RJ. Development of a target identification approach using native mass spectrometry. Scientific Reports. 11: 2387. PMID 33504855 DOI: 10.1038/s41598-021-81859-4   
2021 Zhang X, Thielert M, Li H, Cravatt BF. SPIN4 Is a Principal Endogenous Substrate of the E3 Ubiquitin Ligase DCAF16. Biochemistry. PMID 33636084 DOI: 10.1021/acs.biochem.1c00067   
2021 Wang B, Su Z, Wu Y. Characterizing the function of domain linkers in regulating the dynamics of multi-domain fusion proteins by microsecond molecular dynamics simulations and artificial intelligence. Proteins. PMID 33620752 DOI: 10.1002/prot.26066   
2021 Duś-Szachniewicz K, Rymkiewicz G, Agrawal AK, Kołodziej P, Wiśniewski JR. Large-Scale Proteomic Analysis of Follicular Lymphoma Reveals Extensive Remodeling of Cell Adhesion Pathway and Identifies Hub Proteins Related to the Lymphomagenesis. Cancers. 13. PMID 33562532 DOI: 10.3390/cancers13040630   
2021 LeBlanc EV, Shekhar-Guturja T, Whitesell L, Cowen LE. Fluorescence Polarization-Based Measurement of Protein-Ligand Interaction in Fungal Cell Lysates. Current Protocols. 1: e17. PMID 33484500 DOI: 10.1002/cpz1.17   
2021 Beyer T, Klose F, Kuret A, Hoffmann F, Lukowski R, Ueffing M, Boldt K. Tissue- and isoform-specific protein complex analysis with natively processed bait proteins. Journal of Proteomics. 231: 103947. PMID 32853754 DOI: 10.1016/j.jprot.2020.103947   
2021 Endo M, Ozawa T. Functional Modulation of Receptor Proteins on Cellular Interface with Optogenetic System. Advances in Experimental Medicine and Biology. 1293: 247-263. PMID 33398818 DOI: 10.1007/978-981-15-8763-4_15   
2021 Gayoso A, Steier Z, Lopez R, Regier J, Nazor KL, Streets A, Yosef N. Joint probabilistic modeling of single-cell multi-omic data with totalVI. Nature Methods. PMID 33589839 DOI: 10.1038/s41592-020-01050-x   
2021 Qin W, Cho KF, Cavanagh PE, Ting AY. Deciphering molecular interactions by proximity labeling. Nature Methods. PMID 33432242 DOI: 10.1038/s41592-020-01010-5   
2021 Narasimhan S, Pinto C, Lucini Paioni A, van der Zwan J, Folkers GE, Baldus M. Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy. Nature Protocols. PMID 33442051 DOI: 10.1038/s41596-020-00439-4   
2021 Weke K, Singh A, Uwugiaren N, Alfaro JA, Wang T, Hupp TR, O'Neill JR, Vojtesek B, Goodlett DR, Williams SM, Zhou M, Kelly RT, Zhu Y, Dapic I. MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress. Journal of Proteome Research. PMID 33491460 DOI: 10.1021/acs.jproteome.0c00629   
2021 Wu D, Piszczek G. Rapid Determination of Antibody-Antigen Affinity by Mass Photometry. Journal of Visualized Experiments : Jove. PMID 33616097 DOI: 10.3791/61784   
2021 Mehboob MZ, Lang M. Structure, function, and pathology of protein O-glucosyltransferases. Cell Death & Disease. 12: 71. PMID 33436558 DOI: 10.1038/s41419-020-03314-y   
2021 Gassaway BM, Paulo JA, Gygi SP. Categorization of Phosphorylation Site Behavior during the Diauxic Shift in . Journal of Proteome Research. PMID 33630598 DOI: 10.1021/acs.jproteome.0c00943   
2021 Wenk D, Ignatchenko V, Macklin A, Hübner H, Gmeiner P, Weikert D, Pischetsrieder M, Kislinger T. Functionally selective activation of the dopamine receptor D is mirrored by the protein expression profiles. Scientific Reports. 11: 3501. PMID 33568753 DOI: 10.1038/s41598-021-83038-x   
2021 Zhang J, He S. Co-immunoprecipitation Assay for Blue Light-Dependent Protein Interactions in Plants. Methods in Molecular Biology (Clifton, N.J.). 2297: 141-146. PMID 33656677 DOI: 10.1007/978-1-0716-1370-2_14   
2021 Thole JF, Fadero TC, Bonin JP, Stadmiller SS, Giudice JA, Pielak GJ. Oocytes for Eukaryotic In-Cell NMR. Biochemistry. PMID 33534998 DOI: 10.1021/acs.biochem.0c00922   
2021 Ward TL, Tai W, Morton SU, Impens F, VanDamme P, Van Haver D, Timmerman E, Venturini G, Zhang K, Jang MY, Willcox JA, Haghighi A, Gelb BD, Chung WK, Goldmuntz E, et al. Mechanisms of Congenital Heart Disease Caused by NAA15 Haploinsufficiency. Circulation Research. PMID 33557580 DOI: 10.1161/CIRCRESAHA.120.316966   
2021 Suazo KF, Jeong A, Ahmadi M, Brown C, Qu W, Li L, Distefano MD. Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells. Scientific Reports. 11: 4367. PMID 33623102 DOI: 10.1038/s41598-021-83666-3   
2021 Huang LF, Sinaga DS, Tan CC, Hsieh SM, Huang CH. Expression of Recombinant Human Octamer-Binding Transcription Factor 4 in Rice Suspension Cells. International Journal of Molecular Sciences. 22. PMID 33573352 DOI: 10.3390/ijms22031409   
2021 Villatoro AJ, Martín-Astorga MDC, Alcoholado C, Sánchez-Martín MDM, Becerra J. Proteomic Analysis of the Secretome and Exosomes of Feline Adipose-Derived Mesenchymal Stem Cells. Animals : An Open Access Journal From Mdpi. 11. PMID 33498940 DOI: 10.3390/ani11020295   
2021 López-Molina S, do Nascimento NA, Silva-Filha MHNL, Guerrero A, Sánchez J, Pacheco S, Gill SS, Soberón M, Bravo A. In vivo nanoscale analysis of the dynamic synergistic interaction of Bacillus thuringiensis Cry11Aa and Cyt1Aa toxins in Aedes aegypti. Plos Pathogens. 17: e1009199. PMID 33465145 DOI: 10.1371/journal.ppat.1009199   
2021 Xiong Z, Lo HP, McMahon KA, Martel N, Jones A, Hill MM, Parton RG, Hall TE. In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. Elife. 10. PMID 33591275 DOI: 10.7554/eLife.64631   
2021 Kawakami T, Yu LJ, Liang T, Okazaki K, Madigan MT, Kimura Y, Wang-Otomo ZY. Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP. Nature Communications. 12: 1104. PMID 33597527 DOI: 10.1038/s41467-021-21397-9   
2021 Bircher JE, Koleske AJ. Trio family proteins as regulators of cell migration and morphogenesis in development and disease - mechanisms and cellular contexts. Journal of Cell Science. 134. PMID 33568469 DOI: 10.1242/jcs.248393   
2021 Vistain LF, Tay S. Single-Cell Proteomics. Trends in Biochemical Sciences. PMID 33653632 DOI: 10.1016/j.tibs.2021.01.013   
2021 Ziegler SJ, Mallinson SJB, St John PC, Bomble YJ. Advances in integrative structural biology: Towards understanding protein complexes in their cellular context. Computational and Structural Biotechnology Journal. 19: 214-225. PMID 33425253 DOI: 10.1016/j.csbj.2020.11.052   
2021 Green AG, Elhabashy H, Brock KP, Maddamsetti R, Kohlbacher O, Marks DS. Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature Communications. 12: 1396. PMID 33654096 DOI: 10.1038/s41467-021-21636-z   
2021 Green AG, Elhabashy H, Brock KP, Maddamsetti R, Kohlbacher O, Marks DS. Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature Communications. 12: 1396. PMID 33654096 DOI: 10.1038/s41467-021-21636-z   
2021 Heidarsson PO, Cecconi C. From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers. Essays in Biochemistry. PMID 33438724 DOI: 10.1042/EBC20200024   
2021 Sakuma C, Sato T, Shibata T, Nakagawa M, Kurosawa Y, Okumura CJ, Maruyama T, Arakawa T, Akuta T. Western blotting analysis of proteins separated by agarose native gel electrophoresis. International Journal of Biological Macromolecules. 166: 1106-1110. PMID 33157142 DOI: 10.1016/j.ijbiomac.2020.10.265   
2021 Simard JR, Lee L, Vieux E, Improgo R, Tieu T, Phillips AJ, Fisher SL, Pollock RM, Park E. High-Throughput Quantitative Assay Technologies for Accelerating the Discovery and Optimization of Targeted Protein Degradation Therapeutics. Slas Discovery : Advancing Life Sciences R & D. 2472555220985049. PMID 33430712 DOI: 10.1177/2472555220985049   
2021 Scheu AHA, Lim SYT, Metzner FJ, Mohammed S, Howarth M. NeissLock provides an inducible protein anhydride for covalent targeting of endogenous proteins. Nature Communications. 12: 717. PMID 33514717 DOI: 10.1038/s41467-021-20963-5   
2021 Patel CN, Goswami D, Jaiswal DG, Parmar RM, Solanki HA, Pandya HA. Pinpointing the potential hits for hindering interaction of SARS-CoV-2 S-protein with ACE2 from the pool of antiviral phytochemicals utilizing molecular docking and molecular dynamics (MD) simulations. Journal of Molecular Graphics & Modelling. 105: 107874. PMID 33647752 DOI: 10.1016/j.jmgm.2021.107874   
2021 Xu C, Wang B, Yang L, Zhongming Hu L, Yi L, Wang Y, Chen S, Emili A, Wan C. Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803. Genomics, Proteomics & Bioinformatics. PMID 33636367 DOI: 10.1016/j.gpb.2020.06.020   
2021 Gladyck S, Aras S, Hüttemann M, Grossman LI. Regulation of COX Assembly and Function by Twin CXC Proteins-Implications for Human Disease. Cells. 10. PMID 33498264 DOI: 10.3390/cells10020197