Deo R. Singh, Ph.D. - Related publications
Affiliations: | 2012 | Physics | University of Wisconsin-Milwaukee, Milwaukee, WI |
Area:
General Biophysics, General Physics
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50 most relevant papers in past 60 days:
50 most relevant papers in past 60 days:
| Year | Citation | Score | |
|---|---|---|---|
| 2021 | Baldering TN, Karathanasis C, Harwardt MIE, Freund P, Meurer M, Rahm JV, Knop M, Dietz MS, Heilemann M. CRISPR/Cas12a-mediated labeling of MET receptor enables quantitative single-molecule imaging of endogenous protein organization and dynamics. Iscience. 24: 101895. PMID 33364584 DOI: 10.1016/j.isci.2020.101895 | ||
| 2021 | Fischer LS, Klingner C, Schlichthaerle T, Strauss MT, Böttcher R, Fässler R, Jungmann R, Grashoff C. Quantitative single-protein imaging reveals molecular complex formation of integrin, talin, and kindlin during cell adhesion. Nature Communications. 12: 919. PMID 33568673 DOI: 10.1038/s41467-021-21142-2 | ||
| 2021 | Wolf P, Gavins G, Beck-Sickinger A, Seitz O. Strategies for site-specific labeling of receptor proteins on surfaces of living cells using genetically encoded peptide tags. Chembiochem : a European Journal of Chemical Biology. PMID 33428317 DOI: 10.1002/cbic.202000797 | ||
| 2021 | Gruebele M, Pielak GJ. Dynamical spectroscopy and microscopy of proteins in cells. Current Opinion in Structural Biology. 70: 1-7. PMID 33662744 DOI: 10.1016/j.sbi.2021.02.001 | ||
| 2021 | Işbilir A, Serfling R, Möller J, Thomas R, De Faveri C, Zabel U, Scarselli M, Beck-Sickinger AG, Bock A, Coin I, Lohse MJ, Annibale P. Determination of G-protein-coupled receptor oligomerization by molecular brightness analyses in single cells. Nature Protocols. PMID 33514946 DOI: 10.1038/s41596-020-00458-1 | ||
| 2021 | Murakoshi H. Optogenetic Imaging of Protein Activity Using Two-Photon Fluorescence Lifetime Imaging Microscopy. Advances in Experimental Medicine and Biology. 1293: 295-308. PMID 33398821 DOI: 10.1007/978-981-15-8763-4_18 | ||
| 2021 | Zhang H, Gong W, Wu S, Perrett S. Studying protein folding in health and disease using biophysical approaches. Emerging Topics in Life Sciences. PMID 33660767 DOI: 10.1042/ETLS20200317 | ||
| 2021 | Herrera NG, Morano NC, Celikgil A, Georgiev GI, Malonis RJ, Lee JH, Tong K, Vergnolle O, Massimi AB, Yen LY, Noble AJ, Kopylov M, Bonanno JB, Garrett-Thomson SC, Hayes DB, et al. Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis. Acs Omega. 6: 85-102. PMID 33458462 DOI: 10.1021/acsomega.0c03512 | ||
| 2021 | Chen M, Horn HT, Wen T, Cryns VL, Anderson RA. Assessing In Situ Phosphoinositide-Protein Interactions Through Fluorescence Proximity Ligation Assay in Cultured Cells. Methods in Molecular Biology (Clifton, N.J.). 2251: 133-142. PMID 33481236 DOI: 10.1007/978-1-0716-1142-5_9 | ||
| 2021 | Tan KT, Lin KY, Lam CH, Lin XH, Hsu JI, Fan SY, Gupta NK, Lin YC, Tee BK, Li JP, Chen JK. Improved Stabilities of Labeling Probes for the Selective Modification of Endogenous Proteins in Living Cells and In Vivo. Chemistry, An Asian Journal. PMID 33629493 DOI: 10.1002/asia.202100060 | ||
| 2021 | Pedicini L, Wiktor SD, Simmons KJ, Money A, McKeown L. Affinity-based proteomics reveals novel binding partners for Rab46 in endothelial cells. Scientific Reports. 11: 4054. PMID 33603063 DOI: 10.1038/s41598-021-83560-y | ||
| 2021 | Hu Y, Cheng K, He L, Zhang X, Jiang B, Jiang L, Li C, Wang G, Yang Y, Liu M. NMR-Based Methods for Protein Analysis. Analytical Chemistry. PMID 33439619 DOI: 10.1021/acs.analchem.0c03830 | ||
| 2021 | Panigrahi R, Glover JNM. Structural insights into DNA double-strand break signaling. The Biochemical Journal. 478: 135-156. PMID 33439989 DOI: 10.1042/BCJ20200066 | ||
| 2021 | Skruber K, Read TA, Vitriol EA. Delivering defined amounts of purified protein with high precision into living cells. Star Protocols. 2: 100272. PMID 33511357 DOI: 10.1016/j.xpro.2020.100272 | ||
| 2021 | Liu M, Van Voorhis WC, Quinn RJ. Development of a target identification approach using native mass spectrometry. Scientific Reports. 11: 2387. PMID 33504855 DOI: 10.1038/s41598-021-81859-4 | ||
| 2021 | Zhang X, Thielert M, Li H, Cravatt BF. SPIN4 Is a Principal Endogenous Substrate of the E3 Ubiquitin Ligase DCAF16. Biochemistry. PMID 33636084 DOI: 10.1021/acs.biochem.1c00067 | ||
| 2021 | Wang B, Su Z, Wu Y. Characterizing the function of domain linkers in regulating the dynamics of multi-domain fusion proteins by microsecond molecular dynamics simulations and artificial intelligence. Proteins. PMID 33620752 DOI: 10.1002/prot.26066 | ||
| 2021 | Duś-Szachniewicz K, Rymkiewicz G, Agrawal AK, Kołodziej P, Wiśniewski JR. Large-Scale Proteomic Analysis of Follicular Lymphoma Reveals Extensive Remodeling of Cell Adhesion Pathway and Identifies Hub Proteins Related to the Lymphomagenesis. Cancers. 13. PMID 33562532 DOI: 10.3390/cancers13040630 | ||
| 2021 | LeBlanc EV, Shekhar-Guturja T, Whitesell L, Cowen LE. Fluorescence Polarization-Based Measurement of Protein-Ligand Interaction in Fungal Cell Lysates. Current Protocols. 1: e17. PMID 33484500 DOI: 10.1002/cpz1.17 | ||
| 2021 | Beyer T, Klose F, Kuret A, Hoffmann F, Lukowski R, Ueffing M, Boldt K. Tissue- and isoform-specific protein complex analysis with natively processed bait proteins. Journal of Proteomics. 231: 103947. PMID 32853754 DOI: 10.1016/j.jprot.2020.103947 | ||
| 2021 | Endo M, Ozawa T. Functional Modulation of Receptor Proteins on Cellular Interface with Optogenetic System. Advances in Experimental Medicine and Biology. 1293: 247-263. PMID 33398818 DOI: 10.1007/978-981-15-8763-4_15 | ||
| 2021 | Gayoso A, Steier Z, Lopez R, Regier J, Nazor KL, Streets A, Yosef N. Joint probabilistic modeling of single-cell multi-omic data with totalVI. Nature Methods. PMID 33589839 DOI: 10.1038/s41592-020-01050-x | ||
| 2021 | Qin W, Cho KF, Cavanagh PE, Ting AY. Deciphering molecular interactions by proximity labeling. Nature Methods. PMID 33432242 DOI: 10.1038/s41592-020-01010-5 | ||
| 2021 | Narasimhan S, Pinto C, Lucini Paioni A, van der Zwan J, Folkers GE, Baldus M. Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy. Nature Protocols. PMID 33442051 DOI: 10.1038/s41596-020-00439-4 | ||
| 2021 | Weke K, Singh A, Uwugiaren N, Alfaro JA, Wang T, Hupp TR, O'Neill JR, Vojtesek B, Goodlett DR, Williams SM, Zhou M, Kelly RT, Zhu Y, Dapic I. MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress. Journal of Proteome Research. PMID 33491460 DOI: 10.1021/acs.jproteome.0c00629 | ||
| 2021 | Wu D, Piszczek G. Rapid Determination of Antibody-Antigen Affinity by Mass Photometry. Journal of Visualized Experiments : Jove. PMID 33616097 DOI: 10.3791/61784 | ||
| 2021 | Mehboob MZ, Lang M. Structure, function, and pathology of protein O-glucosyltransferases. Cell Death & Disease. 12: 71. PMID 33436558 DOI: 10.1038/s41419-020-03314-y | ||
| 2021 | Gassaway BM, Paulo JA, Gygi SP. Categorization of Phosphorylation Site Behavior during the Diauxic Shift in . Journal of Proteome Research. PMID 33630598 DOI: 10.1021/acs.jproteome.0c00943 | ||
| 2021 | Wenk D, Ignatchenko V, Macklin A, Hübner H, Gmeiner P, Weikert D, Pischetsrieder M, Kislinger T. Functionally selective activation of the dopamine receptor D is mirrored by the protein expression profiles. Scientific Reports. 11: 3501. PMID 33568753 DOI: 10.1038/s41598-021-83038-x | ||
| 2021 | Zhang J, He S. Co-immunoprecipitation Assay for Blue Light-Dependent Protein Interactions in Plants. Methods in Molecular Biology (Clifton, N.J.). 2297: 141-146. PMID 33656677 DOI: 10.1007/978-1-0716-1370-2_14 | ||
| 2021 | Thole JF, Fadero TC, Bonin JP, Stadmiller SS, Giudice JA, Pielak GJ. Oocytes for Eukaryotic In-Cell NMR. Biochemistry. PMID 33534998 DOI: 10.1021/acs.biochem.0c00922 | ||
| 2021 | Ward TL, Tai W, Morton SU, Impens F, VanDamme P, Van Haver D, Timmerman E, Venturini G, Zhang K, Jang MY, Willcox JA, Haghighi A, Gelb BD, Chung WK, Goldmuntz E, et al. Mechanisms of Congenital Heart Disease Caused by NAA15 Haploinsufficiency. Circulation Research. PMID 33557580 DOI: 10.1161/CIRCRESAHA.120.316966 | ||
| 2021 | Suazo KF, Jeong A, Ahmadi M, Brown C, Qu W, Li L, Distefano MD. Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells. Scientific Reports. 11: 4367. PMID 33623102 DOI: 10.1038/s41598-021-83666-3 | ||
| 2021 | Huang LF, Sinaga DS, Tan CC, Hsieh SM, Huang CH. Expression of Recombinant Human Octamer-Binding Transcription Factor 4 in Rice Suspension Cells. International Journal of Molecular Sciences. 22. PMID 33573352 DOI: 10.3390/ijms22031409 | ||
| 2021 | Villatoro AJ, Martín-Astorga MDC, Alcoholado C, Sánchez-Martín MDM, Becerra J. Proteomic Analysis of the Secretome and Exosomes of Feline Adipose-Derived Mesenchymal Stem Cells. Animals : An Open Access Journal From Mdpi. 11. PMID 33498940 DOI: 10.3390/ani11020295 | ||
| 2021 | López-Molina S, do Nascimento NA, Silva-Filha MHNL, Guerrero A, Sánchez J, Pacheco S, Gill SS, Soberón M, Bravo A. In vivo nanoscale analysis of the dynamic synergistic interaction of Bacillus thuringiensis Cry11Aa and Cyt1Aa toxins in Aedes aegypti. Plos Pathogens. 17: e1009199. PMID 33465145 DOI: 10.1371/journal.ppat.1009199 | ||
| 2021 | Xiong Z, Lo HP, McMahon KA, Martel N, Jones A, Hill MM, Parton RG, Hall TE. In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. Elife. 10. PMID 33591275 DOI: 10.7554/eLife.64631 | ||
| 2021 | Kawakami T, Yu LJ, Liang T, Okazaki K, Madigan MT, Kimura Y, Wang-Otomo ZY. Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP. Nature Communications. 12: 1104. PMID 33597527 DOI: 10.1038/s41467-021-21397-9 | ||
| 2021 | Bircher JE, Koleske AJ. Trio family proteins as regulators of cell migration and morphogenesis in development and disease - mechanisms and cellular contexts. Journal of Cell Science. 134. PMID 33568469 DOI: 10.1242/jcs.248393 | ||
| 2021 | Vistain LF, Tay S. Single-Cell Proteomics. Trends in Biochemical Sciences. PMID 33653632 DOI: 10.1016/j.tibs.2021.01.013 | ||
| 2021 | Ziegler SJ, Mallinson SJB, St John PC, Bomble YJ. Advances in integrative structural biology: Towards understanding protein complexes in their cellular context. Computational and Structural Biotechnology Journal. 19: 214-225. PMID 33425253 DOI: 10.1016/j.csbj.2020.11.052 | ||
| 2021 | Green AG, Elhabashy H, Brock KP, Maddamsetti R, Kohlbacher O, Marks DS. Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature Communications. 12: 1396. PMID 33654096 DOI: 10.1038/s41467-021-21636-z | ||
| 2021 | Green AG, Elhabashy H, Brock KP, Maddamsetti R, Kohlbacher O, Marks DS. Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. Nature Communications. 12: 1396. PMID 33654096 DOI: 10.1038/s41467-021-21636-z | ||
| 2021 | Heidarsson PO, Cecconi C. From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers. Essays in Biochemistry. PMID 33438724 DOI: 10.1042/EBC20200024 | ||
| 2021 | Sakuma C, Sato T, Shibata T, Nakagawa M, Kurosawa Y, Okumura CJ, Maruyama T, Arakawa T, Akuta T. Western blotting analysis of proteins separated by agarose native gel electrophoresis. International Journal of Biological Macromolecules. 166: 1106-1110. PMID 33157142 DOI: 10.1016/j.ijbiomac.2020.10.265 | ||
| 2021 | Simard JR, Lee L, Vieux E, Improgo R, Tieu T, Phillips AJ, Fisher SL, Pollock RM, Park E. High-Throughput Quantitative Assay Technologies for Accelerating the Discovery and Optimization of Targeted Protein Degradation Therapeutics. Slas Discovery : Advancing Life Sciences R & D. 2472555220985049. PMID 33430712 DOI: 10.1177/2472555220985049 | ||
| 2021 | Scheu AHA, Lim SYT, Metzner FJ, Mohammed S, Howarth M. NeissLock provides an inducible protein anhydride for covalent targeting of endogenous proteins. Nature Communications. 12: 717. PMID 33514717 DOI: 10.1038/s41467-021-20963-5 | ||
| 2021 | Patel CN, Goswami D, Jaiswal DG, Parmar RM, Solanki HA, Pandya HA. Pinpointing the potential hits for hindering interaction of SARS-CoV-2 S-protein with ACE2 from the pool of antiviral phytochemicals utilizing molecular docking and molecular dynamics (MD) simulations. Journal of Molecular Graphics & Modelling. 105: 107874. PMID 33647752 DOI: 10.1016/j.jmgm.2021.107874 | ||
| 2021 | Xu C, Wang B, Yang L, Zhongming Hu L, Yi L, Wang Y, Chen S, Emili A, Wan C. Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803. Genomics, Proteomics & Bioinformatics. PMID 33636367 DOI: 10.1016/j.gpb.2020.06.020 | ||
| 2021 | Gladyck S, Aras S, Hüttemann M, Grossman LI. Regulation of COX Assembly and Function by Twin CXC Proteins-Implications for Human Disease. Cells. 10. PMID 33498264 DOI: 10.3390/cells10020197 |