Igor Jurisica - Publications

Affiliations: 
Medical Biophysics University of Toronto, Toronto, ON, Canada 
Area:
Bioinformatics Biology

223 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ali SA, Gandhi R, Potla P, Keshavarzi S, Espin-Garcia O, Shestopaloff K, Pastrello C, Bethune-Waddell D, Lively S, Perruccio AV, Rampersaud YR, Veillette C, Rockel JS, Jurisica I, Appleton T, et al. Sequencing identifies a distinct signature of circulating microRNAs in early radiographic knee osteoarthritis. Osteoarthritis and Cartilage. PMID 32738291 DOI: 10.1016/j.joca.2020.07.003  0.72
2020 Agapito G, Pastrello C, Guzzi PH, Jurisica I, Cannataro M. BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. Bioinformatics (Oxford, England). PMID 32437515 DOI: 10.1093/bioinformatics/btaa529  0.72
2020 Yao Z, Aboualizadeh F, Kroll J, Akula I, Snider J, Lyakisheva A, Tang P, Kotlyar M, Jurisica I, Boxem M, Stagljar I. Split Intein-Mediated Protein Ligation for detecting protein-protein interactions and their inhibition. Nature Communications. 11: 2440. PMID 32415080 DOI: 10.1038/s41467-020-16299-1  1
2020 Sinsky J, Majerova P, Kovac A, Kotlyar M, Jurisica I, Hanes J. Physiological Tau Interactome in Brain and Its Link to Tauopathies. Journal of Proteome Research. 19: 2429-2442. PMID 32357304 DOI: 10.1021/acs.jproteome.0c00137  1
2020 Kennedy SA, Jarboui MA, Srihari S, Raso C, Bryan K, Dernayka L, Charitou T, Bernal-Llinares M, Herrera-Montavez C, Krstic A, Matallanas D, Kotlyar M, Jurisica I, Curak J, Wong V, et al. Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS. Nature Communications. 11: 499. PMID 31980649 DOI: 10.1038/s41467-019-14224-9  1
2020 Tokar T, Pastrello C, Jurisica I. GSOAP: A tool for visualisation of gene set over-representation analysis. Bioinformatics (Oxford, England). PMID 31977031 DOI: 10.1093/bioinformatics/btaa001  0.72
2020 Tokar T, Pastrello C, Jurisica I. GSOAP: A tool for visualisation of gene set over-representation analysis. Bioinformatics (Oxford, England). PMID 31977031 DOI: 10.1093/bioinformatics/btaa001  0.72
2020 Pastrello C, Kotlyar M, Jurisica I. Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). Methods in Molecular Biology (Clifton, N.J.). 2074: 125-134. PMID 31583635 DOI: 10.1007/978-1-4939-9873-9_10  1
2019 Enfield KSS, Marshall EA, Anderson C, Ng KW, Rahmati S, Xu Z, Fuller M, Milne K, Lu D, Shi R, Rowbotham DA, Becker-Santos DD, Johnson FD, English JC, MacAulay CE, ... ... Jurisica I, et al. Epithelial tumor suppressor ELF3 is a lineage-specific amplified oncogene in lung adenocarcinoma. Nature Communications. 10: 5438. PMID 31780666 DOI: 10.1038/s41467-019-13295-y  0.32
2019 Rahmati S, Abovsky M, Pastrello C, Kotlyar M, Lu R, Cumbaa CA, Rahman P, Chandran V, Jurisica I. pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Research. PMID 31733064 DOI: 10.1093/nar/gkz989  1
2019 Monette A, Morou A, Al-Banna NA, Rousseau L, Lattouf JB, Rahmati S, Tokar T, Routy JP, Cailhier JF, Kaufmann DE, Jurisica I, Lapointe R. Failed immune responses across multiple pathologies share pan-tumor and circulating lymphocytic targets. The Journal of Clinical Investigation. 130. PMID 30912767 DOI: 10.1172/JCI125301  0.32
2019 Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, et al. Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature Communications. 10: 1098. PMID 30833551 DOI: 10.1038/s41467-019-08814-w  1
2019 Kaufmann KB, Garcia-Prat L, Liu Q, Ng SWK, Takayanagi SI, Mitchell A, Wienholds E, van Galen P, Cumbaa CA, Tsay MJ, Pastrello C, Wagenblast E, Krivdova G, Minden MD, Lechman ER, ... ... Jurisica I, et al. A stemness screen reveals C3orf54/INKA1 as a promoter of human leukemia stem cell latency. Blood. PMID 30796022 DOI: 10.1182/blood-2018-10-881441  0.72
2019 Mandilaras V, Garg S, Cabanero M, Tan Q, Pastrello C, Burnier J, Karakasis K, Wang L, Dhani NC, Butler MO, Bedard PL, Siu LL, Clarke B, Shaw PA, Stockley T, ... Jurisica I, et al. mutations in high grade serous ovarian cancer and impact on clinical outcomes: a comparison of next generation sequencing and bioinformatics analyses. International Journal of Gynecological Cancer : Official Journal of the International Gynecological Cancer Society. PMID 30659026 DOI: 10.1136/ijgc-2018-000087  0.72
2019 Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, et al. Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature Communications. 10: 10. PMID 30602777 DOI: 10.1038/s41467-018-07709-6  1
2018 Kotlyar M, Pastrello C, Malik Z, Jurisica I. IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Research. PMID 30407591 DOI: 10.1093/nar/gky1037  1
2018 Li L, Guturi KKN, Gautreau B, Patel PS, Saad A, Morii M, Mateo F, Palomero L, Barbour H, Gomez A, Ng D, Kotlyar M, Pastrello C, Jackson HW, Khokha R, ... Jurisica I, et al. Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis. The Journal of Clinical Investigation. PMID 30222135 DOI: 10.1172/JCI120401  1
2018 Tokar T, Pastrello C, Ramnarine VR, Zhu CQ, Craddock KJ, Pikor LA, Vucic EA, Vary S, Shepherd FA, Tsao MS, Lam WL, Jurisica I. Differentially expressed microRNAs in lung adenocarcinoma invert effects of copy number aberrations of prognostic genes. Oncotarget. 9: 9137-9155. PMID 29507679 DOI: 10.1016/j.jtho.2016.11.1067  0.72
2018 Paulitti A, Andreuzzi E, Bizzotto D, Pellicani R, Tarticchio G, Marastoni S, Pastrello C, Jurisica I, Ligresti G, Bucciotti F, Doliana R, Colladel R, Braghetta P, Poletto E, Di Silvestre A, et al. The ablation of the matricellular protein EMILIN2 causes defective vascularization due to impaired EGFR-dependent IL-8 production affecting tumor growth. Oncogene. PMID 29483644 DOI: 10.1038/s41388-017-0107-x  0.72
2017 Kotlyar M, Rossos AEM, Jurisica I. Prediction of Protein-Protein Interactions. Current Protocols in Bioinformatics. 60: 8.2.1-8.2.14. PMID 29220074 DOI: 10.1002/cpbi.38  1
2017 Kotlyar M, Rossos AEM, Jurisica I. Prediction of Protein-Protein Interactions. Current Protocols in Bioinformatics. 60: 8.2.1-8.2.14. PMID 29220074 DOI: 10.1002/cpbi.38  1
2017 Kotlyar M, Rossos AEM, Jurisica I. Prediction of Protein-Protein Interactions. Current Protocols in Bioinformatics. 60: 8.2.1-8.2.14. PMID 29220074 DOI: 10.1002/cpbi.38  1
2017 Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Research. PMID 29194489 DOI: 10.1093/nar/gkx1144  0.96
2017 Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Research. PMID 29194489 DOI: 10.1093/nar/gkx1144  0.96
2017 Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Research. PMID 29194489 DOI: 10.1093/nar/gkx1144  0.96
2017 Wong SWH, Pastrello C, Kotlyar M, Faloutsos C, Jurisica I. Modeling tumor progression via the comparison of stage-specific graphs. Methods (San Diego, Calif.). PMID 28684340 DOI: 10.1016/j.ymeth.2017.06.033  1
2017 Pastrello C, Tsay M, McQuaid R, Abovsky M, Pasini E, Shirdel E, Angeli M, Tokar T, Jamnik J, Kotlyar M, Jurisicova A, Kotsopoulos J, El-Sohemy A, Jurisica I. Retraction: Circulating plant miRNAs can regulate human gene expression in vitro. Scientific Reports. 7: 46826. PMID 28530244 DOI: 10.1038/srep46826  1
2017 Sokolina K, Kittanakom S, Snider J, Kotlyar M, Maurice P, Gandía J, Benleulmi-Chaachoua A, Tadagaki K, Oishi A, Wong V, Malty RH, Deineko V, Aoki H, Amin S, Yao Z, ... ... Jurisica I, et al. Systematic protein-protein interaction mapping for clinically relevant human GPCRs. Molecular Systems Biology. 13: 918. PMID 28298427  1
2017 Citron F, Armenia J, Franchin G, Polesel J, Talamini R, D'Andrea S, Sulfaro S, Croce CM, Klement W, Otasek D, Pastrello C, Tokar T, Jurisica I, French D, Bomben R, et al. An integrated approach identifies mediators of local recurrence in Head & Neck Squamous Carcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28174235 DOI: 10.1158/1078-0432.CCR-16-2814  0.72
2016 Yao Z, Darowski K, St-Denis N, Wong V, Offensperger F, Villedieu A, Amin S, Malty R, Aoki H, Guo H, Xu Y, Iorio C, Kotlyar M, Emili A, Jurisica I, et al. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. Molecular Cell. PMID 28065597 DOI: 10.1016/j.molcel.2016.12.004  1
2016 Petschnigg J, Kotlyar M, Blair L, Jurisica I, Stagljar I, Ketteler R. Systematic Identification of Oncogenic EGFR Interaction Partners. Journal of Molecular Biology. PMID 27956147 DOI: 10.1016/j.jmb.2016.12.006  1
2016 Rahmati S, Abovsky M, Pastrello C, Jurisica I. pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Research. PMID 27899558 DOI: 10.1093/nar/gkw1082  0.72
2016 Pastrello C, Tsay M, McQuaid R, Abovsky M, Pasini E, Shirdel E, Angeli M, Tokar T, Jamnik J, Kotlyar M, Jurisicova A, Kotsopoulos J, El-Sohemy A, Jurisica I. Circulating plant miRNAs can regulate human gene expression in vitro. Scientific Reports. 6: 32773. PMID 27604570 DOI: 10.1038/srep32773  1
2016 Chehade R, Pettapiece-Phillips R, Salmena L, Kotlyar M, Jurisica I, Narod SA, Akbari MR, Kotsopoulos J. Reduced BRCA1 transcript levels in freshly isolated blood leukocytes from BRCA1 mutation carriers is mutation specific. Breast Cancer Research : Bcr. 18: 87. PMID 27534398 DOI: 10.1186/s13058-016-0739-8  1
2016 Konvalinka A, Batruch I, Tokar T, Dimitromanolakis A, Reid S, Song X, Pei Y, Drabovich AP, Diamandis EP, Jurisica I, Scholey JW. Quantification of angiotensin II-regulated proteins in urine of patients with polycystic and other chronic kidney diseases by selected reaction monitoring. Clinical Proteomics. 13: 16. PMID 27499720 DOI: 10.1186/s12014-016-9117-x  1
2016 Becker-Santos DD, Thu KL, English JC, Pikor LA, Martinez VD, Zhang M, Vucic EA, Luk MT, Carraro A, Korbelik J, Piga D, Lhomme NM, Tsay MJ, Yee J, MacAulay CE, ... ... Jurisica I, et al. Developmental transcription factor NFIB is a putative target of oncofetal miRNAs and is associated with tumour aggressiveness in lung adenocarcinoma. The Journal of Pathology. PMID 27357447 DOI: 10.1002/path.4765  1
2016 Stojanova A, Tu WB, Ponzielli R, Kotlyar M, Chan PK, Boutros PC, Khosravi F, Jurisica I, Raught B, Penn LZ. MYC interaction with the tumour suppressive SWI/SNF complex member INI1 regulates transcription and cellular transformation. Cell Cycle (Georgetown, Tex.). 0. PMID 27267444 DOI: 10.1080/15384101.2016.1146836  1
2016 Li YH, Tavallaee G, Tokar T, Nakamura A, Sundararajan K, Weston A, Sharma A, Mahomed NN, Gandhi R, Jurisica I, Kapoor M. Identification of synovial fluid microRNA signature in knee osteoarthritis: Differentiating early- and late-stage knee Osteoarthritis. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. PMID 27143365 DOI: 10.1016/j.joca.2016.04.019  1
2016 Cinegaglia NC, Andrade SC, Tokar T, Pinheiro M, Severino FE, Oliveira RA, Hasimoto EN, Cataneo DC, Cataneo AJ, Defaveri J, Souza CP, Marques MM, Carvalho RF, Coutinho LL, Gross JL, ... ... Jurisica I, et al. Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma. Oncotarget. PMID 27081085 DOI: 10.18632/oncotarget.8713  1
2016 Pettapiece-Phillips R, Kotlyar M, Chehade R, Salmena L, Narod SA, Akbari M, Jurisica I, Kotsopoulos J. Uninterrupted Sedentary Behavior Downregulates BRCA1 Gene Expression. Cancer Prevention Research (Philadelphia, Pa.). 9: 83-8. PMID 26526989 DOI: 10.1158/1940-6207.CAPR-15-0291  1
2016 Kotlyar M, Pastrello C, Sheahan N, Jurisica I. Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Research. 44: D536-41. PMID 26516188 DOI: 10.1093/nar/gkv1115  1
2016 Cierna Z, Mego M, Jurisica I, Machalekova K, Chovanec M, Miskovska V, Svetlovska D, Kalavska K, Rejlekova K, Kajo K, Mardiak J, Babal P. Fibrillin-1 (FBN-1) a new marker of germ cell neoplasia in situ Bmc Cancer. 16. DOI: 10.1186/s12885-016-2644-z  1
2016 Larsen SJ, Alkærsig FG, Ditzel HJ, Jurisica I, Alcaraz N, Baumbach J. A simulated annealing algorithm for maximum common edge subgraph detection in biological networks Gecco 2016 - Proceedings of the 2016 Genetic and Evolutionary Computation Conference. 341-348. DOI: 10.1145/2908812.2908858  1
2015 Vargas A, Angeli M, Li H, Jurisicova A, McQuaid R, Pastrello C, Jurisica I. Robust Quantitative Scratch Assay. Bioinformatics (Oxford, England). PMID 26722119 DOI: 10.1093/bioinformatics/btv746  1
2015 Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I. Fundamentals of protein interaction network mapping. Molecular Systems Biology. 11: 848. PMID 26681426  1
2015 Benleulmi-Chaachoua A, Chen L, Sokolina K, Wong V, Jurisica I, Emerit MB, Darmon M, Espin A, Stagljar I, Tafelmeyer P, Zamponi GW, Delagrange P, Maurice P, Jockers R. Protein interactome mining defines melatonin MT1 receptors as integral component of presynaptic protein complexes of neurons. Journal of Pineal Research. PMID 26514267 DOI: 10.1111/jpi.12294  1
2015 Agostini M, Janssen KP, Kim IJ, D'Angelo E, Pizzini S, Zangrando A, Zanon C, Pastrello C, Maretto I, Digito M, Bedin C, Jurisica I, Rizzolio F, Giordano A, Bortoluzzi S, et al. An integrative approach for the identification of prognostic and predictive biomarkers in rectal cancer. Oncotarget. 6: 32561-74. PMID 26359356 DOI: 10.18632/oncotarget.4935  1
2015 Navab R, Strumpf D, To C, Pasko E, Kim KS, Park CJ, Hai J, Liu J, Jonkman J, Barczyk M, Bandarchi B, Wang YH, Venkat K, Ibrahimov E, Pham NA, ... ... Jurisica I, et al. Integrin α11β1 regulates cancer stromal stiffness and promotes tumorigenicity and metastasis in non-small cell lung cancer. Oncogene. PMID 26148229 DOI: 10.1038/onc.2015.254  1
2015 Stewart EL, Mascaux C, Pham NA, Sakashita S, Sykes J, Kim L, Yanagawa N, Allo G, Ishizawa K, Wang D, Zhu CQ, Li M, Ng C, Liu N, Pintilie M, ... ... Jurisica I, et al. Clinical Utility of Patient-Derived Xenografts to Determine Biomarkers of Prognosis and Map Resistance Pathways in EGFR-Mutant Lung Adenocarcinoma. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. PMID 26124487 DOI: 10.1200/JCO.2014.60.1492  1
2015 Agostini M, Zangrando A, Pastrello C, D'Angelo E, Romano G, Giovannoni R, Giordan M, Maretto I, Bedin C, Zanon C, Digito M, Esposito G, Mescoli C, Lavitrano M, Rizzolio F, ... Jurisica I, et al. A functional biological network centered on XRCC3: a new possible marker of chemoradiotherapy resistance in rectal cancer patients. Cancer Biology & Therapy. 1-12. PMID 26023803 DOI: 10.1080/15384047.2015.1046652  1
2015 Fortney K, Griesman J, Kotlyar M, Pastrello C, Angeli M, Sound-Tsao M, Jurisica I. Prioritizing therapeutics for lung cancer: an integrative meta-analysis of cancer gene signatures and chemogenomic data. Plos Computational Biology. 11: e1004068. PMID 25786242 DOI: 10.1371/journal.pcbi.1004068  1
2015 Camargo JF, Resende MR, Zamel R, Klement W, Bhimji A, Huibner S, Kumar D, Humar A, Jurisica I, Keshavjee S, Kaul R, Husain S. Potential role of CC chemokine receptor 6 in prediction of late-onset cytomegalovirus infection following solid organ transplant. Clinical Transplantation. 29: 492-8. PMID 25690781 DOI: 10.1111/ctr.12531  1
2015 Hoeng J, Peitsch MC, Meyer P, Jurisica I. Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinformatics (Oxford, England). 31: 451-2. PMID 25638813 DOI: 10.1093/bioinformatics/btv065  1
2015 Starmans MH, Pintilie M, Chan-Seng-Yue M, Moon NC, Haider S, Nguyen F, Lau SK, Liu N, Kasprzyk A, Wouters BG, Der SD, Shepherd FA, Jurisica I, Penn LZ, Tsao MS, et al. Integrating RAS status into prognostic signatures for adenocarcinomas of the lung. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 1477-86. PMID 25609067 DOI: 10.1158/1078-0432.CCR-14-1749  1
2015 Dingar D, Kalkat M, Chan PK, Srikumar T, Bailey SD, Tu WB, Coyaud E, Ponzielli R, Kolyar M, Jurisica I, Huang A, Lupien M, Penn LZ, Raught B. BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors. Journal of Proteomics. 118: 95-111. PMID 25452129 DOI: 10.1016/j.jprot.2014.09.029  1
2015 Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, ... ... Jurisica I, et al. In silico prediction of physical protein interactions and characterization of interactome orphans. Nature Methods. 12: 79-84. PMID 25402006 DOI: 10.1038/nmeth.3178  1
2015 Wong SW, Cercone N, Jurisica I. Comparative network analysis via differential graphlet communities. Proteomics. 15: 608-17. PMID 25283527 DOI: 10.1002/pmic.201400233  1
2015 Tu WB, Helander S, Pilstål R, Hickman KA, Lourenco C, Jurisica I, Raught B, Wallner B, Sunnerhagen M, Penn LZ. Myc and its interactors take shape. Biochimica Et Biophysica Acta. 1849: 469-483. PMID 24933113 DOI: 10.1016/j.bbagrm.2014.06.002  1
2015 Singh M, Garg N, Venugopal C, Hallett R, Tokar T, McFarlane N, Mahendram S, Bakhshinyan D, Manoranjan B, Vora P, Qazi M, Arpin CC, Page B, Haftchenary S, Rosa DA, ... ... Jurisica I, et al. STAT3 pathway regulates lung-derived brain metastasis initiating cell capacity through miR-21 activation Oncotarget. 6: 27461-27477. DOI: 10.18632/oncotarget.4742  1
2015 Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I. Fundamentals of protein interaction network mapping Molecular Systems Biology. 11. DOI: 10.15252/msb.20156351  1
2015 Veillette CJH, Jurisica I. Precision medicine for osteoarthritis Osteoarthritis: Pathogenesis, Diagnosis, Available Treatments, Drug Safety, Regenerative and Precision Medicine. 257-270. DOI: 10.1007/978-3-319-19560-5_13  1
2014 Lapin V, Shirdel EA, Wei X, Mason JM, Jurisica I, Mak TW. Kinome-wide screening of HER2+ breast cancer cells for molecules that mediate cell proliferation or sensitize cells to trastuzumab therapy. Oncogenesis. 3: e133. PMID 25500906 DOI: 10.1038/oncsis.2014.45  1
2014 Lalonde E, Ishkanian AS, Sykes J, Fraser M, Ross-Adams H, Erho N, Dunning MJ, Halim S, Lamb AD, Moon NC, Zafarana G, Warren AY, Meng X, Thoms J, Grzadkowski MR, ... ... Jurisica I, et al. Tumour genomic and microenvironmental heterogeneity for integrated prediction of 5-year biochemical recurrence of prostate cancer: a retrospective cohort study. The Lancet. Oncology. 15: 1521-32. PMID 25456371 DOI: 10.1016/S1470-2045(14)71021-6  1
2014 Berlin A, Lalonde E, Sykes J, Zafarana G, Chu KC, Ramnarine VR, Ishkanian A, Sendorek DH, Pasic I, Lam WL, Jurisica I, van der Kwast T, Milosevic M, Boutros PC, Bristow RG. NBN gain is predictive for adverse outcome following image-guided radiotherapy for localized prostate cancer. Oncotarget. 5: 11081-90. PMID 25415046  1
2014 Vucic EA, Thu KL, Pikor LA, Enfield KS, Yee J, English JC, MacAulay CE, Lam S, Jurisica I, Lam WL. Smoking status impacts microRNA mediated prognosis and lung adenocarcinoma biology. Bmc Cancer. 14: 778. PMID 25342220 DOI: 10.1186/1471-2407-14-778  1
2014 . Comprehensive molecular profiling of lung adenocarcinoma. Nature. 511: 543-50. PMID 25079552 DOI: 10.1038/nature13385  1
2014 Holzinger A, Dehmer M, Jurisica I. Knowledge Discovery and interactive Data Mining in Bioinformatics--State-of-the-Art, future challenges and research directions. Bmc Bioinformatics. 15: I1. PMID 25078282 DOI: 10.1186/1471-2105-15-S6-I1  1
2014 Petschnigg J, Groisman B, Kotlyar M, Taipale M, Zheng Y, Kurat CF, Sayad A, Sierra JR, Mattiazzi Usaj M, Snider J, Nachman A, Krykbaeva I, Tsao MS, Moffat J, Pawson T, ... ... Jurisica I, et al. The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells. Nature Methods. 11: 585-92. PMID 24658140 DOI: 10.1038/nmeth.2895  1
2014 Kittanakom S, Barrios-Rodiles M, Petschnigg J, Arnoldo A, Wong V, Kotlyar M, Heisler LE, Jurisica I, Wrana JL, Nislow C, Stagljar I. CHIP-MYTH: a novel interactive proteomics method for the assessment of agonist-dependent interactions of the human β₂-adrenergic receptor. Biochemical and Biophysical Research Communications. 445: 746-56. PMID 24561123 DOI: 10.1016/j.bbrc.2014.02.033  1
2014 Pastrello C, Pasini E, Kotlyar M, Otasek D, Wong S, Sangrar W, Rahmati S, Jurisica I. Integration, visualization and analysis of human interactome. Biochemical and Biophysical Research Communications. 445: 757-73. PMID 24491561 DOI: 10.1016/j.bbrc.2014.01.151  1
2014 Cervigne NK, Machado J, Goswami RS, Sadikovic B, Bradley G, Perez-Ordonez B, Galloni NN, Gilbert R, Gullane P, Irish JC, Jurisica I, Reis PP, Kamel-Reid S. Recurrent genomic alterations in sequential progressive leukoplakia and oral cancer: drivers of oral tumorigenesis? Human Molecular Genetics. 23: 2618-28. PMID 24403051 DOI: 10.1093/hmg/ddt657  1
2014 Der SD, Sykes J, Pintilie M, Zhu CQ, Strumpf D, Liu N, Jurisica I, Shepherd FA, Tsao MS. Validation of a histology-independent prognostic gene signature for early-stage, non-small-cell lung cancer including stage IA patients. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 9: 59-64. PMID 24305008 DOI: 10.1097/JTO.0000000000000042  1
2014 Holzinger A, Jurisica I. Knowledge discovery and data mining in biomedical informatics: The future is in integrative, interactive machine learning solutions Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8401: 1-18.  1
2014 Holzinger A, Jurisica I. Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8401: V-VI.  1
2014 Otasek1 D, Pastrello1 C, Holzinger A, Jurisica I. Visual data mining: Effective exploration of the biological universe Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8401: 19-33.  1
2013 Ponzielli R, Tu WB, Jurisica I, Penn LZ. Identifying Myc interactors. Methods in Molecular Biology (Clifton, N.J.). 1012: 51-64. PMID 24006057 DOI: 10.1007/978-1-62703-429-6_4  1
2013 Goswami RS, Atenafu EG, Xuan Y, Waldron L, Reis PP, Sun T, Datti A, Xu W, Kuruvilla J, Good DJ, Lai R, Church AJ, Lam WS, Baetz T, Lebrun DP, ... ... Jurisica I, et al. MicroRNA signature obtained from the comparison of aggressive with indolent non-Hodgkin lymphomas: potential prognostic value in mantle-cell lymphoma. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 2903-11. PMID 23835716 DOI: 10.1200/JCO.2012.45.3050  1
2013 Vafaee F, Rosu D, Broackes-Carter F, Jurisica I. Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. Bmc Systems Biology. 7: 22. PMID 23497449 DOI: 10.1186/1752-0509-7-22  1
2013 Cirilo PD, Marchi FA, Barros Filho Mde C, Rocha RM, Domingues MA, Jurisica I, Pontes A, Rogatto SR. An integrative genomic and transcriptomic analysis reveals potential targets associated with cell proliferation in uterine leiomyomas. Plos One. 8: e57901. PMID 23483937 DOI: 10.1371/journal.pone.0057901  1
2013 Pastrello C, Otasek D, Fortney K, Agapito G, Cannataro M, Shirdel E, Jurisica I. Visual data mining of biological networks: one size does not fit all. Plos Computational Biology. 9: e1002833. PMID 23341759 DOI: 10.1371/journal.pcbi.1002833  1
2013 Fortney K, Xie W, Kotlyar M, Griesman J, Kotseruba Y, Jurisica I. NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. Nucleic Acids Research. 41: D720-7. PMID 23203867 DOI: 10.1093/nar/gks1106  1
2013 Berger T, Ueda T, Arpaia E, Chio II, Shirdel EA, Jurisica I, Hamada K, You-Ten A, Haight J, Wakeham A, Cheung CC, Mak TW. Flotillin-2 deficiency leads to reduced lung metastases in a mouse breast cancer model. Oncogene. 32: 4989-94. PMID 23146906 DOI: 10.1038/onc.2012.499  1
2013 Baker CJO, Butler G, Jurisica I. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7970. DOI: 10.1007/978-3-642-39437-9  1
2012 Starmans MH, Pintilie M, John T, Der SD, Shepherd FA, Jurisica I, Lambin P, Tsao MS, Boutros PC. Exploiting the noise: improving biomarkers with ensembles of data analysis methodologies. Genome Medicine. 4: 84. PMID 23146350 DOI: 10.1186/gm385  1
2012 McKee CM, Xu D, Cao Y, Kabraji S, Allen D, Kersemans V, Beech J, Smart S, Hamdy F, Ishkanian A, Sykes J, Pintile M, Milosevic M, van der Kwast T, Zafarana G, ... ... Jurisica I, et al. Protease nexin 1 inhibits hedgehog signaling in prostate adenocarcinoma. The Journal of Clinical Investigation. 122: 4025-36. PMID 23041623 DOI: 10.1172/JCI59348  1
2012 Kotlyar M, Fortney K, Jurisica I. Network-based characterization of drug-regulated genes, drug targets, and toxicity. Methods (San Diego, Calif.). 57: 499-507. PMID 22749929 DOI: 10.1016/j.ymeth.2012.06.003  1
2012 Fortney K, Morgen EK, Kotlyar M, Jurisica I. In silico drug screen in mouse liver identifies candidate calorie restriction mimetics. Rejuvenation Research. 15: 148-52. PMID 22533420 DOI: 10.1089/rej.2011.1263  1
2012 Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, ... ... Jurisica I, et al. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nature Methods. 9: 345-50. PMID 22453911 DOI: 10.1038/nmeth.1931  1
2012 Hai J, Zhu CQ, Bandarchi B, Wang YH, Navab R, Shepherd FA, Jurisica I, Tsao MS. L1 cell adhesion molecule promotes tumorigenicity and metastatic potential in non-small cell lung cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 1914-24. PMID 22307136 DOI: 10.1158/1078-0432.CCR-11-2893  1
2012 Locke JA, Zafarana G, Malloff CA, Lam WL, Sykes J, Pintilie M, Ramnarine VR, Meng A, Ahmed O, Jurisica I, Guns ET, van der Kwast T, Milosevic M, Bristow RG. Allelic loss of the loci containing the androgen synthesis gene, StAR, is prognostic for relapse in intermediate-risk prostate cancer. The Prostate. 72: 1295-305. PMID 22213075 DOI: 10.1002/pros.22478  1
2012 Singh N, Shirdel EA, Waldron L, Zhang RH, Jurisica I, Comelli EM. The murine caecal microRNA signature depends on the presence of the endogenous microbiota. International Journal of Biological Sciences. 8: 171-86. PMID 22211115  1
2012 King AD, Pržulj N, Jurisica I. Protein complex prediction with RNSC. Methods in Molecular Biology (Clifton, N.J.). 804: 297-312. PMID 22144160 DOI: 10.1007/978-1-61779-361-5_16  1
2012 Geraci J, Liu G, Jurisica I. Algorithms for systematic identification of small subgraphs. Methods in Molecular Biology (Clifton, N.J.). 804: 219-44. PMID 22144156 DOI: 10.1007/978-1-61779-361-5_12  1
2012 Heifets A, Jurisica I. SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents. Nucleic Acids Research. 40: D428-33. PMID 22067445 DOI: 10.1093/nar/gkr919  1
2012 Locke JA, Zafarana G, Ishkanian AS, Milosevic M, Thoms J, Have CL, Malloff CA, Lam WL, Squire JA, Pintilie M, Sykes J, Ramnarine VR, Meng A, Ahmed O, Jurisica I, et al. NKX3.1 haploinsufficiency is prognostic for prostate cancer relapse following surgery or image-guided radiotherapy. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 308-16. PMID 22048240 DOI: 10.1158/1078-0432.CCR-11-2147  1
2012 Kotseruba Y, Cumbaa CA, Jurisica I. High-throughput protein crystallization on the World Community Grid and the GPU Journal of Physics: Conference Series. 341. DOI: 10.1088/1742-6596/341/1/012027  1
2012 Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman F, Cesareni G, Chatr-Aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, ... ... Jurisica I, et al. Corrigendum: Protein interaction data curation: The International Molecular Exchange (IMEx) consortium (Nature Methods (2012) 9, (345-350)) Nature Methods. 9: 626. DOI: 10.1038/nmeth0612-626a  1
2012 Heifets A, Jurisica I. Construction of new medicines via game proof search Proceedings of the National Conference On Artificial Intelligence. 2: 1564-1570.  1
2011 Waldron L, Pintilie M, Tsao MS, Shepherd FA, Huttenhower C, Jurisica I. Optimized application of penalized regression methods to diverse genomic data. Bioinformatics (Oxford, England). 27: 3399-406. PMID 22156367 DOI: 10.1093/bioinformatics/btr591  1
2011 Hakem A, Bohgaki M, Lemmers B, Tai E, Salmena L, Matysiak-Zablocki E, Jung YS, Karaskova J, Kaustov L, Duan S, Madore J, Boutros P, Sheng Y, Chesi M, Bergsagel PL, ... ... Jurisica I, et al. Role of Pirh2 in mediating the regulation of p53 and c-Myc. Plos Genetics. 7: e1002360. PMID 22125490 DOI: 10.1371/journal.pgen.1002360  1
2011 Reis PP, Waldron L, Perez-Ordonez B, Pintilie M, Galloni NN, Xuan Y, Cervigne NK, Warner GC, Makitie AA, Simpson C, Goldstein D, Brown D, Gilbert R, Gullane P, Irish J, ... Jurisica I, et al. A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence. Bmc Cancer. 11: 437. PMID 21989116 DOI: 10.1186/1471-2407-11-437  1
2011 Eppert K, Takenaka K, Lechman ER, Waldron L, Nilsson B, van Galen P, Metzeler KH, Poeppl A, Ling V, Beyene J, Canty AJ, Danska JS, Bohlander SK, Buske C, Minden MD, ... ... Jurisica I, et al. Stem cell gene expression programs influence clinical outcome in human leukemia. Nature Medicine. 17: 1086-93. PMID 21873988 DOI: 10.1038/nm.2415  1
2011 Liu X, Fernandes R, Gertsenstein M, Perumalsamy A, Lai I, Chi M, Moley KH, Greenblatt E, Jurisica I, Casper RF, Sun Y, Jurisicova A. Automated microinjection of recombinant BCL-X into mouse zygotes enhances embryo development. Plos One. 6: e21687. PMID 21799744 DOI: 10.1371/journal.pone.0021687  1
2011 Notta F, Doulatov S, Laurenti E, Poeppl A, Jurisica I, Dick JE. Isolation of single human hematopoietic stem cells capable of long-term multilineage engraftment. Science (New York, N.Y.). 333: 218-21. PMID 21737740 DOI: 10.1126/science.1201219  1
2011 Fortney K, Jurisica I. Integrative computational biology for cancer research. Human Genetics. 130: 465-81. PMID 21691773 DOI: 10.1007/s00439-011-0983-z  1
2011 Yan R, Boutros PC, Jurisica I. A tree-based approach for motif discovery and sequence classification. Bioinformatics (Oxford, England). 27: 2054-61. PMID 21685048 DOI: 10.1093/bioinformatics/btr353  1
2011 Osei-Kumah A, Smith R, Jurisica I, Caniggia I, Clifton VL. Sex-specific differences in placental global gene expression in pregnancies complicated by asthma Placenta. 32: 570-578. PMID 21641640 DOI: 10.1016/j.placenta.2011.05.005  1
2011 Reis PP, Waldron L, Goswami RS, Xu W, Xuan Y, Perez-Ordonez B, Gullane P, Irish J, Jurisica I, Kamel-Reid S. mRNA transcript quantification in archival samples using multiplexed, color-coded probes. Bmc Biotechnology. 11: 46. PMID 21549012 DOI: 10.1186/1472-6750-11-46  1
2011 Yakhini Z, Jurisica I. Cancer computational biology. Bmc Bioinformatics. 12: 120. PMID 21521513 DOI: 10.1186/1471-2105-12-120  1
2011 Elschenbroich S, Ignatchenko V, Clarke B, Kalloger SE, Boutros PC, Gramolini AO, Shaw P, Jurisica I, Kislinger T. In-depth proteomics of ovarian cancer ascites: combining shotgun proteomics and selected reaction monitoring mass spectrometry. Journal of Proteome Research. 10: 2286-99. PMID 21491939 DOI: 10.1021/pr1011087  1
2011 Navab R, Strumpf D, Bandarchi B, Zhu CQ, Pintilie M, Ramnarine VR, Ibrahimov E, Radulovich N, Leung L, Barczyk M, Panchal D, To C, Yun JJ, Der S, Shepherd FA, ... Jurisica I, et al. Prognostic gene-expression signature of carcinoma-associated fibroblasts in non-small cell lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 108: 7160-5. PMID 21474781 DOI: 10.1073/pnas.1014506108  1
2011 Shirdel EA, Xie W, Mak TW, Jurisica I. NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. Plos One. 6: e17429. PMID 21364759 DOI: 10.1371/journal.pone.0017429  1
2011 Chang Q, Jurisica I, Do T, Hedley DW. Hypoxia predicts aggressive growth and spontaneous metastasis formation from orthotopically grown primary xenografts of human pancreatic cancer. Cancer Research. 71: 3110-20. PMID 21343390 DOI: 10.1158/0008-5472.CAN-10-4049  1
2011 Wei Y, Tong J, Taylor P, Strumpf D, Ignatchenko V, Pham NA, Yanagawa N, Liu G, Jurisica I, Shepherd FA, Tsao MS, Kislinger T, Moran MF. Primary tumor xenografts of human lung adeno and squamous cell carcinoma express distinct proteomic signatures. Journal of Proteome Research. 10: 161-74. PMID 20815376 DOI: 10.1021/pr100491e  1
2011 Djebbari A, Ali M, Otasek D, Kotlyar M, Fortney K, Wong S, Hrvojic A, Jurisica I. Navigator: Large scalable and interactive navigation and analysis of large graphs Internet Mathematics. 7: 314-347. DOI: 10.1080/15427951.2011.604289  1
2011 Arshadi N, Jurisica I. Ensembles of case-based reasoning classifiers in high-dimensional biological domains Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 1: 164-171. DOI: 10.1002/widm.22  1
2010 Viau C, McGuffin MJ, Chiricota Y, Jurisica I. The FlowVizMenu and parallel scatterplot matrix: hybrid multidimensional visualizations for network exploration. Ieee Transactions On Visualization and Computer Graphics. 16: 1100-8. PMID 20975148 DOI: 10.1109/TVCG.2010.205  1
2010 Boutros PC, Pintilie M, John T, Starmans MH, Der SD, Shepherd FA, Tsao MS, Jurisica I. Re: Gene expression-based prognostic signatures in lung cancer: ready for clinical use? Journal of the National Cancer Institute. 102: 1677-8; author reply. PMID 20921041 DOI: 10.1093/jnci/djq385  1
2010 Reis PP, Tomenson M, Cervigne NK, Machado J, Jurisica I, Pintilie M, Sukhai MA, Perez-Ordonez B, Grénman R, Gilbert RW, Gullane PJ, Irish JC, Kamel-Reid S. Programmed cell death 4 loss increases tumor cell invasion and is regulated by miR-21 in oral squamous cell carcinoma. Molecular Cancer. 9: 238. PMID 20831814 DOI: 10.1186/1476-4598-9-238  1
2010 Zhu CQ, Ding K, Strumpf D, Weir BA, Meyerson M, Pennell N, Thomas RK, Naoki K, Ladd-Acosta C, Liu N, Pintilie M, Der S, Seymour L, Jurisica I, Shepherd FA, et al. Prognostic and predictive gene signature for adjuvant chemotherapy in resected non-small-cell lung cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 28: 4417-24. PMID 20823422 DOI: 10.1200/JCO.2009.26.4325  1
2010 Zhu CQ, Strumpf D, Li CY, Li Q, Liu N, Der S, Shepherd FA, Tsao MS, Jurisica I. Prognostic gene expression signature for squamous cell carcinoma of lung. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 5038-47. PMID 20739434 DOI: 10.1158/1078-0432.CCR-10-0612  1
2010 Clendening JW, Pandyra A, Boutros PC, El Ghamrasni S, Khosravi F, Trentin GA, Martirosyan A, Hakem A, Hakem R, Jurisica I, Penn LZ. Dysregulation of the mevalonate pathway promotes transformation. Proceedings of the National Academy of Sciences of the United States of America. 107: 15051-6. PMID 20696928 DOI: 10.1073/pnas.0910258107  1
2010 Wong WW, Boutros PC, Wasylishen AR, Guckert KD, O'Brien EM, Griffiths R, Martirosyan AR, Bros C, Jurisica I, Langler RF, Penn LZ. Characterization of the apoptotic response of human leukemia cells to organosulfur compounds. Bmc Cancer. 10: 351. PMID 20598143 DOI: 10.1186/1471-2407-10-351  1
2010 Goswami RS, Waldron L, Machado J, Cervigne NK, Xu W, Reis PP, Bailey DJ, Jurisica I, Crump MR, Kamel-Reid S. Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples. Bmc Biotechnology. 10: 47. PMID 20573258 DOI: 10.1186/1472-6750-10-47  1
2010 Clendening JW, Pandyra A, Li Z, Boutros PC, Martirosyan A, Lehner R, Jurisica I, Trudel S, Penn LZ. Exploiting the mevalonate pathway to distinguish statin-sensitive multiple myeloma. Blood. 115: 4787-97. PMID 20360469 DOI: 10.1182/blood-2009-07-230508  1
2010 Hui AB, Lenarduzzi M, Krushel T, Waldron L, Pintilie M, Shi W, Perez-Ordonez B, Jurisica I, O'Sullivan B, Waldron J, Gullane P, Cummings B, Liu FF. Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 1129-39. PMID 20145181 DOI: 10.1158/1078-0432.CCR-09-2166  1
2010 Fortney K, Kotlyar M, Jurisica I. Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging. Genome Biology. 11: R13. PMID 20128910 DOI: 10.1186/gb-2010-11-2-r13  1
2010 Radulovich N, Pham NA, Strumpf D, Leung L, Xie W, Jurisica I, Tsao MS. Differential roles of cyclin D1 and D3 in pancreatic ductal adenocarcinoma. Molecular Cancer. 9: 24. PMID 20113529 DOI: 10.1186/1476-4598-9-24  1
2010 Cumbaa CA, Jurisica I. Protein crystallization analysis on the World Community Grid. Journal of Structural and Functional Genomics. 11: 61-9. PMID 20072819 DOI: 10.1007/s10969-009-9076-9  1
2010 Niu Y, Otasek D, Jurisica I. Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D. Bioinformatics (Oxford, England). 26: 111-9. PMID 19850753 DOI: 10.1093/bioinformatics/btp602  1
2010 Xia E, Jurisica I, Waterhouse J, Sloan V. Runtime estimation using the case-based reasoning approach for scheduling in a grid environment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6176: 525-539. DOI: 10.1007/978-3-642-14274-1_38  1
2009 Deribe YL, Wild P, Chandrashaker A, Curak J, Schmidt MH, Kalaidzidis Y, Milutinovic N, Kratchmarova I, Buerkle L, Fetchko MJ, Schmidt P, Kittanakom S, Brown KR, Jurisica I, Blagoev B, et al. Regulation of epidermal growth factor receptor trafficking by lysine deacetylase HDAC6. Science Signaling. 2: ra84. PMID 20029029 DOI: 10.1126/scisignal.2000576  1
2009 Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Toch IL, Jurisica I. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. Bioinformatics (Oxford, England). 25: 3327-9. PMID 19837718 DOI: 10.1093/bioinformatics/btp595  1
2009 McGuffin MJ, Jurisica I. Interaction techniques for selecting and manipulating subgraphs in network visualizations. Ieee Transactions On Visualization and Computer Graphics. 15: 937-44. PMID 19834157 DOI: 10.1109/TVCG.2009.151  1
2009 Zhu CQ, Pintilie M, John T, Strumpf D, Shepherd FA, Der SD, Jurisica I, Tsao MS. Understanding prognostic gene expression signatures in lung cancer. Clinical Lung Cancer. 10: 331-40. PMID 19808191 DOI: 10.3816/CLC.2009.n.045  1
2009 Cervigne NK, Reis PP, Machado J, Sadikovic B, Bradley G, Galloni NN, Pintilie M, Jurisica I, Perez-Ordonez B, Gilbert R, Gullane P, Irish J, Kamel-Reid S. Identification of a microRNA signature associated with progression of leukoplakia to oral carcinoma. Human Molecular Genetics. 18: 4818-29. PMID 19776030 DOI: 10.1093/hmg/ddp446  1
2009 Agarwal R, Jurisica I, Mills GB, Cheng KW. The emerging role of the RAB25 small GTPase in cancer. Traffic (Copenhagen, Denmark). 10: 1561-8. PMID 19719478 DOI: 10.1111/j.1600-0854.2009.00969.x  1
2009 Mills GB, Jurisica I, Yarden Y, Norman JC. Genomic amplicons target vesicle recycling in breast cancer. The Journal of Clinical Investigation. 119: 2123-7. PMID 19620778 DOI: 10.1172/JCI40256  1
2009 Cox B, Kotlyar M, Evangelou AI, Ignatchenko V, Ignatchenko A, Whiteley K, Jurisica I, Adamson SL, Rossant J, Kislinger T. Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology. Molecular Systems Biology. 5: 279. PMID 19536202 DOI: 10.1038/msb.2009.37  1
2009 Savas S, Geraci J, Jurisica I, Liu G. A comprehensive catalogue of functional genetic variations in the EGFR pathway: protein-protein interaction analysis reveals novel genes and polymorphisms important for cancer research. International Journal of Cancer. Journal International Du Cancer. 125: 1257-65. PMID 19499547 DOI: 10.1002/ijc.24535  1
2009 Hui AB, Shi W, Boutros PC, Miller N, Pintilie M, Fyles T, McCready D, Wong D, Gerster K, Waldron L, Jurisica I, Penn LZ, Liu FF. Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues. Laboratory Investigation; a Journal of Technical Methods and Pathology. 89: 597-606. PMID 19290006 DOI: 10.1038/labinvest.2009.12  1
2009 Dong J, Kislinger T, Jurisica I, Wigle DA. Lung cancer: developmental networks gone awry? Cancer Biology & Therapy. 8: 312-8. PMID 19202349  1
2009 Boutros PC, Lau SK, Pintilie M, Liu N, Shepherd FA, Der SD, Tsao MS, Penn LZ, Jurisica I. Prognostic gene signatures for non-small-cell lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 106: 2824-8. PMID 19196983 DOI: 10.1073/pnas.0809444106  1
2009 Chaudhri VK, Jurisica I, Koubarakis M, Plexousakis D, Topaloglou T. The KBMS project and beyond Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5600: 466-482. DOI: 10.1007/978-3-642-02463-4_24  1
2008 Snell EH, Lauricella AM, Potter SA, Luft JR, Gulde SM, Collins RJ, Franks G, Malkowski MG, Cumbaa C, Jurisica I, DeTitta GT. Establishing a training set through the visual analysis of crystallization trials. Part II: crystal examples. Acta Crystallographica. Section D, Biological Crystallography. 64: 1131-7. PMID 19020351 DOI: 10.1107/S0907444908028059  1
2008 Snell EH, Luft JR, Potter SA, Lauricella AM, Gulde SM, Malkowski MG, Koszelak-Rosenblum M, Said MI, Smith JL, Veatch CK, Collins RJ, Franks G, Thayer M, Cumbaa C, Jurisica I, et al. Establishing a training set through the visual analysis of crystallization trials. Part I: approximately 150,000 images. Acta Crystallographica. Section D, Biological Crystallography. 64: 1123-30. PMID 19020350 DOI: 10.1107/S0907444908028047  1
2008 Ponzielli R, Boutros PC, Katz S, Stojanova A, Hanley AP, Khosravi F, Bros C, Jurisica I, Penn LZ. Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies. Nucleic Acids Research. 36: e144. PMID 18940864 DOI: 10.1093/nar/gkn735  1
2008 Tomasini R, Tsuchihara K, Wilhelm M, Fujitani M, Rufini A, Cheung CC, Khan F, Itie-Youten A, Wakeham A, Tsao MS, Iovanna JL, Squire J, Jurisica I, Kaplan D, Melino G, et al. TAp73 knockout shows genomic instability with infertility and tumor suppressor functions. Genes & Development. 22: 2677-91. PMID 18805989 DOI: 10.1101/gad.1695308  1
2008 Jurisicova A, Jurisica I, Kislinger T. Advances in ovarian cancer proteomics: the quest for biomarkers and improved therapeutic interventions. Expert Review of Proteomics. 5: 551-60. PMID 18761466 DOI: 10.1586/14789450.5.4.551  1
2008 Beheshti Zavareh R, Lau KS, Hurren R, Datti A, Ashline DJ, Gronda M, Cheung P, Simpson CD, Liu W, Wasylishen AR, Boutros PC, Shi H, Vengopal A, Jurisica I, Penn LZ, et al. Inhibition of the sodium/potassium ATPase impairs N-glycan expression and function. Cancer Research. 68: 6688-97. PMID 18701493 DOI: 10.1158/0008-5472.CAN-07-6833  1
2008 Shedden K, Taylor JM, Enkemann SA, Tsao MS, Yeatman TJ, Gerald WL, Eschrich S, Jurisica I, Giordano TJ, Misek DE, Chang AC, Zhu CQ, Strumpf D, Hanash S, et al. Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study. Nature Medicine. 14: 822-7. PMID 18641660 DOI: 10.1038/nm.1790  1
2008 Aviel-Ronen S, Coe BP, Lau SK, da Cunha Santos G, Zhu CQ, Strumpf D, Jurisica I, Lam WL, Tsao MS. Genomic markers for malignant progression in pulmonary adenocarcinoma with bronchioloalveolar features. Proceedings of the National Academy of Sciences of the United States of America. 105: 10155-60. PMID 18632575 DOI: 10.1073/pnas.0709618105  1
2008 Sodek KL, Evangelou AI, Ignatchenko A, Agochiya M, Brown TJ, Ringuette MJ, Jurisica I, Kislinger T. Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT). Molecular Biosystems. 4: 762-73. PMID 18563251 DOI: 10.1039/b717542f  1
2008 Gortzak-Uzan L, Ignatchenko A, Evangelou AI, Agochiya M, Brown KA, St Onge P, Kireeva I, Schmitt-Ulms G, Brown TJ, Murphy J, Rosen B, Shaw P, Jurisica I, Kislinger T. A proteome resource of ovarian cancer ascites: integrated proteomic and bioinformatic analyses to identify putative biomarkers. Journal of Proteome Research. 7: 339-51. PMID 18076136 DOI: 10.1021/pr0703223  1
2008 Niu Y, Jurisica I. Detecting protein-protein interaction sentences using a mixture model Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5039: 352-354. DOI: 10.1007/978-3-540-69858-6_42  1
2007 Wigle D, Jurisica I. Cancer as a system failure. Cancer Informatics. 5: 10-8. PMID 19390665  1
2007 Lau SK, Boutros PC, Pintilie M, Blackhall FH, Zhu CQ, Strumpf D, Johnston MR, Darling G, Keshavjee S, Waddell TK, Liu N, Lau D, Penn LZ, Shepherd FA, Jurisica I, et al. Three-gene prognostic classifier for early-stage non small-cell lung cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 25: 5562-9. PMID 18065728 DOI: 10.1200/JCO.2007.12.0352  1
2007 Ghavidel A, Kislinger T, Pogoutse O, Sopko R, Jurisica I, Emili A. Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint. Cell. 131: 915-26. PMID 18045534 DOI: 10.1016/j.cell.2007.09.042  1
2007 Kim SS, Shago M, Kaustov L, Boutros PC, Clendening JW, Sheng Y, Trentin GA, Barsyte-Lovejoy D, Mao DY, Kay R, Jurisica I, Arrowsmith CH, Penn LZ. CUL7 is a novel antiapoptotic oncogene. Cancer Research. 67: 9616-22. PMID 17942889 DOI: 10.1158/0008-5472.CAN-07-0644  1
2007 Jurisica I, Wigle DA, Wong B, Tsao M, Liu J, Johnston M, Kislinger T. Cancer informatics in the post genomic era. Toward information-based medicine. Cancer Treatment and Research. 137: 1-178. PMID 17702160  1
2007 Zhu CQ, Popova SN, Brown ER, Barsyte-Lovejoy D, Navab R, Shih W, Li M, Lu M, Jurisica I, Penn LZ, Gullberg D, Tsao MS. Integrin alpha 11 regulates IGF2 expression in fibroblasts to enhance tumorigenicity of human non-small-cell lung cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 11754-9. PMID 17600088 DOI: 10.1073/pnas.0703040104  1
2007 Wong WW, Clendening JW, Martirosyan A, Boutros PC, Bros C, Khosravi F, Jurisica I, Stewart AK, Bergsagel PL, Penn LZ. Determinants of sensitivity to lovastatin-induced apoptosis in multiple myeloma. Molecular Cancer Therapeutics. 6: 1886-97. PMID 17575117 DOI: 10.1158/1535-7163.MCT-06-0745  1
2007 Brown KR, Jurisica I. Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biology. 8: R95. PMID 17535438 DOI: 10.1186/gb-2007-8-5-r95  1
2007 Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T, Hogan B, Jurisica I, Frey B, Rossant J, Emili A. Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes. Molecular Systems Biology. 3: 109. PMID 17486137 DOI: 10.1038/msb4100151  1
2007 Wu C, Ma MH, Brown KR, Geisler M, Li L, Tzeng E, Jia CY, Jurisica I, Li SS. Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. Proteomics. 7: 1775-85. PMID 17474147 DOI: 10.1002/pmic.200601006  1
2007 Motamed-Khorasani A, Jurisica I, Letarte M, Shaw PA, Parkes RK, Zhang X, Evangelou A, Rosen B, Murphy KJ, Brown TJ. Differentially androgen-modulated genes in ovarian epithelial cells from BRCA mutation carriers and control patients predict ovarian cancer survival and disease progression. Oncogene. 26: 198-214. PMID 16832351 DOI: 10.1038/sj.onc.1209773  1
2007 Evangelou A, Gortzak-Uzan L, Jurisica I, Kislinger T. Mass spectrometry, proteomics, data mining strategies and their applications in infectious disease research Anti-Infective Agents in Medicinal Chemistry. 6: 89-105. DOI: 10.2174/187152107780361689  1
2007 Yan R, Jurisica I, Boutros PC, Penn LZ. Comparison of machine learning and pattern discovery algorithms for the prediction of human single nucleotide polymorphisms Proceedings - 2007 Ieee International Conference On Granular Computing, Grc 2007. 452-457. DOI: 10.1109/GRC.2007.4403141  1
2007 Xia E, Jurisica I, Waterhouse J, Sloan V. The impact of runtime estimation inaccuracy on scheduler performance Proceedings of the Iasted International Conference On Parallel and Distributed Computing and Systems. 351-356.  1
2006 Bachtiary B, Boutros PC, Pintilie M, Shi W, Bastianutto C, Li JH, Schwock J, Zhang W, Penn LZ, Jurisica I, Fyles A, Liu FF. Gene expression profiling in cervical cancer: an exploration of intratumor heterogeneity. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 12: 5632-40. PMID 17020965 DOI: 10.1158/1078-0432.CCR-06-0357  1
2006 Shi W, Bastianutto C, Li A, Perez-Ordonez B, Ng R, Chow KY, Zhang W, Jurisica I, Lo KW, Bayley A, Kim J, O'Sullivan B, Siu L, Chen E, Liu FF. Multiple dysregulated pathways in nasopharyngeal carcinoma revealed by gene expression profiling. International Journal of Cancer. 119: 2467-75. PMID 16858677 DOI: 10.1002/ijc.22107  1
2006 Barsyte-Lovejoy D, Lau SK, Boutros PC, Khosravi F, Jurisica I, Andrulis IL, Tsao MS, Penn LZ. The c-Myc oncogene directly induces the H19 noncoding RNA by allele-specific binding to potentiate tumorigenesis. Cancer Research. 66: 5330-7. PMID 16707459 DOI: 10.1158/0008-5472.CAN-06-0037  1
2006 Brierley MM, Marchington KL, Jurisica I, Fish EN. Identification of GAS-dependent interferon-sensitive target genes whose transcription is STAT2-dependent but ISGF3-independent. The Febs Journal. 273: 1569-81. PMID 16689942 DOI: 10.1111/j.1742-4658.2006.05176.x  1
2006 Przulj N, Corneil DG, Jurisica I. Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. Bioinformatics (Oxford, England). 22: 974-80. PMID 16452112 DOI: 10.1093/bioinformatics/btl030  1
2006 Seiden-Long IM, Brown KR, Shih W, Wigle DA, Radulovich N, Jurisica I, Tsao MS. Transcriptional targets of hepatocyte growth factor signaling and Ki-ras oncogene activation in colorectal cancer. Oncogene. 25: 91-102. PMID 16158056 DOI: 10.1038/sj.onc.1209005  1
2006 Xia E, Jurisica I, Waterhouse J. CasSim: A top-level-simulator for grid scheduling and applications Proceedings of the 2006 Conference of the Center For Advanced Studies On Collaborative Research, Cascon '06. DOI: 10.1145/1188966.1189008  1
2006 Kotlyar M, Jurisica I. Predicting protein-protein interactions by association mining Information Systems Frontiers. 8: 37-47. DOI: 10.1007/s10796-005-6102-8  1
2006 Jurisica I, Glasgow J. Introduction: Knowledge discovery in high-throughput biological domains Information Systems Frontiers. 8: 5-7. DOI: 10.1007/s10796-005-6098-o  1
2006 Kislinger T, Jurisica I. Proteomics and bioinformatics in biomedical research Cancer Genomics and Proteomics. 3: 11-28.  1
2005 Cumbaa C, Jurisica I. Automatic classification and pattern discovery in high-throughput protein crystallization trials. Journal of Structural and Functional Genomics. 6: 195-202. PMID 16211519 DOI: 10.1007/s10969-005-5243-9  1
2005 Heisler LE, Torti D, Boutros PC, Watson J, Chan C, Winegarden N, Takahashi M, Yau P, Huang THM, Farnham PJ, Jurisica I, Woodgett JR, Bremner R, Penn LZ, Der SD. CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome Nucleic Acids Research. 33: 2952-2961. PMID 15911630 DOI: 10.1093/nar/gki582  1
2005 Trus MR, Yang L, Suarez Saiz F, Bordeleau L, Jurisica I, Minden MD. The histone deacetylase inhibitor valproic acid alters sensitivity towards all trans retinoic acid in acute myeloblastic leukemia cells Leukemia. 19: 1161-1168. PMID 15902297 DOI: 10.1038/sj.leu.2403773  1
2005 Soleymanlou N, Jurisica I, Nevo O, Ietta F, Zhang X, Zamudio S, Post M, Caniggia I. Molecular evidence of placental hypoxia in preeclampsia. The Journal of Clinical Endocrinology and Metabolism. 90: 4299-308. PMID 15840747 DOI: 10.1210/jc.2005-0078  1
2005 Barrios-Rodiles M, Brown KR, Ozdamar B, Bose R, Liu Z, Donovan RS, Shinjo F, Liu Y, Dembowy J, Taylor IW, Luga V, Przulj N, Robinson M, Suzuki H, Hayashizaki Y, ... Jurisica I, et al. High-throughput mapping of a dynamic signaling network in mammalian cells. Science (New York, N.Y.). 307: 1621-5. PMID 15761153 DOI: 10.1126/science.1105776  1
2005 Brown KR, Jurisica I. Online predicted human interaction database. Bioinformatics (Oxford, England). 21: 2076-82. PMID 15657099 DOI: 10.1093/bioinformatics/bti273  1
2005 Arshadi N, Jurisica I. Data mining for case-based reasoning in high-dimensional biological domains Ieee Transactions On Knowledge and Data Engineering. 17: 1127-1137. DOI: 10.1109/TKDE.2005.124  1
2005 Arshadi N, Jurisica I. Feature selection for improving case-based classifiers on high-dimensional data sets Proceedings of the Eighteenth International Florida Artificial Intelligence Research Society Conference, Flairs 2005 - Recent Advances in Artifical Intelligence. 99-104.  1
2005 Arshadi N, Jurisica I. An ensemble of case-based classifiers for high-dimensional biological domains Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3620: 21-34.  1
2004 Blackhall FH, Pintilie M, Wigle DA, Jurisica I, Liu N, Radulovich N, Johnston MR, Keshavjee S, Tsao MS. Stability and heterogeneity of expression profiles in lung cancer specimens harvested following surgical resection. Neoplasia (New York, N.Y.). 6: 761-7. PMID 15720802 DOI: 10.1593/neo.04301  1
2004 Blackhall FH, Wigle DA, Jurisica I, Pintilie M, Liu N, Darling G, Johnston MR, Keshavjee S, Waddell T, Winton T, Shepherd FA, Tsao MS. Validating the prognostic value of marker genes derived from a non-small cell lung cancer microarray study. Lung Cancer (Amsterdam, Netherlands). 46: 197-204. PMID 15474668 DOI: 10.1016/j.lungcan.2004.04.002  1
2004 Przulj N, Corneil DG, Jurisica I. Modeling interactome: scale-free or geometric? Bioinformatics (Oxford, England). 20: 3508-15. PMID 15284103 DOI: 10.1093/bioinformatics/bth436  1
2004 Liu J, Blackhall F, Seiden-Long I, Jurisica I, Navab R, Liu N, Radulovich N, Wigle D, Sultan M, Hu J, Tsao MS, Johnston MR. Modeling of lung cancer by an orthotopically growing H460SM variant cell line reveals novel candidate genes for systemic metastasis. Oncogene. 23: 6316-24. PMID 15247903 DOI: 10.1038/sj.onc.1207795  1
2004 King AD, Pržulj N, Jurisica I. Protein complex prediction via cost-based clustering Bioinformatics. 20: 3013-3020. PMID 15180928 DOI: 10.1093/bioinformatics/bth351  1
2004 Warner GC, Reis PP, Jurisica I, Sultan M, Arora S, Macmillan C, Makitie AA, Grénman R, Reid N, Sukhai M, Freeman J, Gullane P, Irish J, Kamel-Reid S. Molecular classification of oral cancer by cDNA microarrays identifies overexpressed genes correlated with nodal metastasis. International Journal of Cancer. Journal International Du Cancer. 110: 857-68. PMID 15170668 DOI: 10.1002/ijc.20197  1
2004 Pržulj N, Wigle DA, Jurisica I. Functional topology in a network of protein interactions Bioinformatics. 20: 340-348. PMID 14960460 DOI: 10.1093/bioinformatics/btg415  1
2004 Wigle DA, Tsao M, Jurisica I. Making sense of lung-cancer gene-expression profiles Genome Biology. 5. PMID 14759255 DOI: 10.1186/gb-2004-5-2-309  1
2004 Warner GC, Reis PP, Makitie AA, Sukhai MA, Arora S, Jurisica I, Wells RA, Gullane P, Irish J, Kamel-Reid S. Current Applications of Microarrays in Head and Neck Cancer Research Laryngoscope. 114: 241-248. PMID 14755198 DOI: 10.1097/00005537-200402000-00013  1
2004 Acton BM, Jurisicova A, Jurisica I, Casper RF. Alterations in mitochondrial membrane potential during preimplantation stages of mouse and human embryo development Molecular Human Reproduction. 10: 23-32. PMID 14665703 DOI: 10.1093/molehr/gah004  1
2004 Arshadi N, Jurisica I. Maintaining case-based reasoning systems: A machine learning approach Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3155: 17-31.  1
2004 Jurisica I, Glasgow J. Applications of Case-Based Reasoning in Molecular Biology Ai Magazine. 25: 85-95.  1
2004 Xia E, Jurisica I. Effectiveness of grid configurations on application performance Proceedings of the Iasted International Conference On Parallel and Distributed Computing and Systems. 16: 40-46.  1
2004 Glasgow J, Jurisica I, Rost B. AI and Bioinformatics Ai Magazine. 25: 7-8.  1
2003 Breitkreutz A, Boucher L, Breitkreutz BJ, Sultan M, Jurisica I, Tyers M. Phenotypic and transcriptional plasticity directed by a yeast mitogen-activated protein kinase network. Genetics. 165: 997-1015. PMID 14668360  1
2003 Cumbaa CA, Lauricella A, Fehrman N, Veatch C, Collins R, Luft J, DeTitta G, Jurisica I. Automatic classification of sub-microlitre protein-crystallization trials in 1536-well plates. Acta Crystallographica. Section D, Biological Crystallography. 59: 1619-27. PMID 12925793 DOI: 10.1107/S0907444903015130  1
2003 Evangelou A, Letarte M, Jurisica I, Sultan M, Murphy KJ, Rosen B, Brown TJ. Loss of coordinated androgen regulation in nonmalignant ovarian epithelial cells with BRCA1/2 mutations and ovarian cancer cells Cancer Research. 63: 2416-2424. PMID 12750261  1
2002 Jurisica I, Wigle DA. Understanding biology through intelligent systems Genome Biology. 3. PMID 12429057  1
2002 Sultan M, Wigle DA, Cumbaa CA, Maziarz M, Glasgow J, Tsao MS, Jurisica I. Binary tree-structured vector quantization approach to clustering and visualizing microarray data. Bioinformatics (Oxford, England). 18: S111-9. PMID 12169538 DOI: 10.1093/bioinformatics/18.suppl_1.S111  1
2002 Wigle DA, Jurisica I, Radulovich N, Pintilie M, Rossant J, Liu N, Lu C, Woodgett J, Seiden I, Johnston M, Keshavjee S, Darling G, Winton T, Breitkreutz BJ, Jorgenson P, et al. Molecular profiling of non-small cell lung cancer and correlation with disease-free survival. Cancer Research. 62: 3005-8. PMID 12036904  1
2001 Wigle DA, Rossant J, Jurisica I. Mining mouse microarray data Genome Biology. 2. PMID 11516341  1
2001 Jurisica I, Rogers P, Glasgow JI, Collins RJ, Wolfley JR, Luft JR, DeTitta GT. Improving objectivity and scalability in protein crystallization Ieee Intelligent Systems and Their Applications. 16: 26-34. DOI: 10.1109/5254.972075  1
2001 Luft JR, Wolfley J, Jurisica I, Glasgow J, Fortier S, DeTitta GT. Macromolecular crystallization in a high throughput laboratory - The search phase Journal of Crystal Growth. 232: 591-595. DOI: 10.1016/S0022-0248(01)01206-4  1
2001 Jurisica I, Rogers P, Glasgow JI, Fortier S, Luft JR, Wolfley JR, Bianca MA, Weeks DR, DeTitta GT. Intelligent decision support for protein crystal growth Ibm Systems Journal. 40: 394-409.  1
2001 Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Bianca M, Collins R, De Titta G. Image-feature extraction for protein crystallization: Integrating image analysis and case-based reasoning Innovative Applications of Artificial Intelligence - Conference Proceedings. 73-80.  1
2001 DeTitta GT, Bianca MA, Collins RJ, Faust AME, Kaczmarek JN, Luft JR, Fehrman NA, Pangborn WA, Salerno JM, Wolfley JR, Jurisica I, Rogers P, Quon G, Glasgow J, Fortier S. Macromolecular crystallization in a high throughput setting 2001 Conference and Exhibit On International Space Station Utilization 1
2000 Jurisica I, Glasgow J. Extending case-based reasoning by discovering and using image features in IVF Proceedings of the Acm Symposium On Applied Computing. 1: 52-59. DOI: 10.1145/335603.335693  1
2000 Jurisica I, Glasgow J, Mylopoulos J. Incremental iterative retrieval and browsing for efficient conversational CBR systems Applied Intelligence. 12: 251-268. DOI: 10.1023/A:1008375309626  1
2000 Jurisica I. Building better decision-support systems by using knowledge discovery Proceedings of the Asis Annual Meeting. 37: 281-291.  1
2000 Jurisica I. Systematic knowledge management and knowledge discovery Bulletin of the American Society For Information Science. 27: 9-12.  1
1999 Jurisica I, Mylopoulos J, Yu E. Using ontologies for knowledge management: An information systems perspective Proceedings of the Asis Annual Meeting. 36: 482-496.  1
1998 Jurisica I, Mylopoulos J, Glasgow J, Shapiro H, Casper RF. Case-based reasoning in IVF: prediction and knowledge mining. Artificial Intelligence in Medicine. 12: 1-24. PMID 9475949 DOI: 10.1016/S0933-3657(97)00037-7  1
1998 Jurisica I, Glasgow J. An efficient approach to iterative browsing and retrieval for case-based reasoning Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1416: 535-546. DOI: 10.1007/3-540-64574-8_439  1
1998 Jurisica I, Nixon BA. Building quality into case-based reasoning systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1413: 363-380.  1
1998 Dayani-Fard H, Jurisica I. Reverse engineering by mining dynamic repositories Reverse Engineering - Working Conference Proceedings. 174-182.  1
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