Nicholas Chia, Ph.D. - Publications

Affiliations: 
2006 Ohio State University, Columbus, Columbus, OH 
Area:
General Biophysics, Bioinformatics Biology

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hieken TJ, Chen J, Hoskin TL, Walther-Antonio M, Johnson S, Ramaker S, Xiao J, Radisky DC, Knutson KL, Kalari KR, Yao JZ, Baddour LM, Chia N, Degnim AC. The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease. Scientific Reports. 6: 30751. PMID 27485780 DOI: 10.1038/srep30751  0.96
2016 Chen J, Chia N, Kalari KR, Yao JZ, Novotna M, Soldan MM, Luckey DH, Marietta EV, Jeraldo PR, Chen X, Weinshenker BG, Rodriguez M, Kantarci OH, Nelson H, Murray JA, et al. Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls. Scientific Reports. 6: 28484. PMID 27346372 DOI: 10.1038/srep28484  0.96
2016 Thoendel M, Jeraldo PR, Greenwood-Quaintance KE, Yao JZ, Chia N, Hanssen AD, Abdel MP, Patel R. Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing. Journal of Microbiological Methods. PMID 27237775 DOI: 10.1016/j.mimet.2016.05.022  0.96
2016 Sinha R, Vogtmann E, Chen J, Amir A, Shi J, Sampson JN, Flores R, Knight R, Chia N. "Fecal microbiome in epidemiologic studies" - Response. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 26961994 DOI: 10.1158/1055-9965.EPI-16-0161  0.96
2016 Kao PC, Han QJ, Liu S, Li XJ, Inman KS, Chia N. Letter to the editor: The surge of type 2 diabetes mellitus in China - An international alert: Physical exercise and low-caloric diet may reduce the risks of type 2 diabetes mellitus and dementia Annals of Clinical and Laboratory Science. 46: 114-118.  0.96
2015 Baldwin EA, Walther-Antonio M, MacLean AM, Gohl DM, Beckman KB, Chen J, White B, Creedon DJ, Chia N. Persistent microbial dysbiosis in preterm premature rupture of membranes from onset until delivery. Peerj. 3: e1398. PMID 26644969 DOI: 10.7717/peerj.1398  0.96
2015 Sinha R, Chen J, Amir A, Vogtmann E, Shi J, Inman KS, Flores-Munguia R, Sampson JN, Knight R, Chia N. Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 26604270 DOI: 10.1158/1055-9965.EPI-15-0951  0.96
2015 Parthasarathy G, Chen J, Chen X, Chia N, O'Connor HM, Wolf PG, Gaskins HR, Bharucha AE. Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation. Gastroenterology. PMID 26460205 DOI: 10.1053/j.gastro.2015.10.005  0.96
2015 Braundmeier AG, Lenz KM, Inman KS, Chia N, Jeraldo P, Walther-António MR, Berg Miller ME, Yang F, Creedon DJ, Nelson H, White BA. Individualized medicine and the microbiome in reproductive tract. Frontiers in Physiology. 6: 97. PMID 25883569 DOI: 10.3389/fphys.2015.00097  0.96
2015 Sung J, Hale V, Merkel AC, Kim PJ, Chia N. Metabolic modeling with Big Data and the gut microbiome Applied and Translational Genomics. DOI: 10.1016/j.atg.2016.02.001  0.96
2014 Jeraldo P, Kalari K, Chen X, Bhavsar J, Mangalam A, White B, Nelson H, Kocher JP, Chia N. IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries. Plos One. 9: e114804. PMID 25506826 DOI: 10.1371/journal.pone.0114804  0.96
2014 Seto CT, Jeraldo P, Orenstein R, Chia N, DiBaise JK. Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility. Microbiome. 2: 42. PMID 25426290 DOI: 10.1186/2049-2618-2-42  0.96
2014 Benedict MN, Mundy MB, Henry CS, Chia N, Price ND. Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models. Plos Computational Biology. 10: e1003882. PMID 25329157 DOI: 10.1371/journal.pcbi.1003882  0.96
2014 Theofiles AG, Cunningham SA, Chia N, Jeraldo PR, Quest DJ, Mandrekar JN, Patel R. Pertussis outbreak, southeastern Minnesota, 2012. Mayo Clinic Proceedings. 89: 1378-88. PMID 25282430 DOI: 10.1016/j.mayocp.2014.08.004  0.96
2014 Kang SS, Jeraldo PR, Kurti A, Miller ME, Cook MD, Whitlock K, Goldenfeld N, Woods JA, White BA, Chia N, Fryer JD. Diet and exercise orthogonally alter the gut microbiome and reveal independent associations with anxiety and cognition. Molecular Neurodegeneration. 9: 36. PMID 25217888 DOI: 10.1186/1750-1326-9-36  0.96
2014 Walther-António MR, Jeraldo P, Berg Miller ME, Yeoman CJ, Nelson KE, Wilson BA, White BA, Chia N, Creedon DJ. Pregnancy's stronghold on the vaginal microbiome. Plos One. 9: e98514. PMID 24896831 DOI: 10.1371/journal.pone.0098514  0.96
2014 Dong Y, Kumar CG, Chia N, Kim PJ, Miller PA, Price ND, Cann IK, Flynn TM, Sanford RA, Krapac IG, Locke RA, Hong PY, Tamaki H, Liu WT, Mackie RI, et al. Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir. Environmental Microbiology. 16: 1695-708. PMID 24238218 DOI: 10.1111/1462-2920.12325  0.96
2013 Yang F, Chia N, White BA, Schook LB. Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison. Bmc Bioinformatics. 14: 136. PMID 23617892 DOI: 10.1186/1471-2105-14-136  0.96
2012 Yeoman CJ, Chia N, Jeraldo P, Sipos M, Goldenfeld ND, White BA. The microbiome of the chicken gastrointestinal tract. Animal Health Research Reviews / Conference of Research Workers in Animal Diseases. 13: 89-99. PMID 22853945 DOI: 10.1017/S1466252312000138  0.96
2012 Jeraldo P, Sipos M, Chia N, Brulc JM, Dhillon AS, Konkel ME, Larson CL, Nelson KE, Qu A, Schook LB, Yang F, White BA, Goldenfeld N. Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 9692-8. PMID 22615407 DOI: 10.1073/pnas.1206721109  0.96
2012 Berg Miller ME, Yeoman CJ, Chia N, Tringe SG, Angly FE, Edwards RA, Flint HJ, Lamed R, Bayer EA, White BA. Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environmental Microbiology. 14: 207-27. PMID 22004549 DOI: 10.1111/j.1462-2920.2011.02593.x  0.96
2011 Jeraldo P, Chia N, Goldenfeld N. On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys. Environmental Microbiology. 13: 3000-9. PMID 21910812 DOI: 10.1111/j.1462-2920.2011.02577.x  0.96
2011 Chia N, Goldenfeld N. Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 021906. PMID 21405862 DOI: 10.1103/PhysRevE.83.021906  0.96
2011 Li Y, Chia N, Lauria M, Bundschuh R. A performance enhanced PSI-BLAST based on hybrid alignment. Bioinformatics (Oxford, England). 27: 31-7. PMID 21115441 DOI: 10.1093/bioinformatics/btq621  0.96
2011 Yeoman CJ, Chia N, Yildirim S, Berg Miller ME, Kent A, Stumpf R, Leigh SR, Nelson KE, White BA, Wilson BA. Towards an evolutionary model of animal-associated microbiomes Entropy. 13: 570-594. DOI: 10.3390/e13030570  0.96
2011 Chia N, Goldenfeld N. Statistical Mechanics of Horizontal Gene Transfer in Evolutionary Ecology Journal of Statistical Physics. 142: 1287-1301. DOI: 10.1007/s10955-010-0112-8  0.96
2010 Sipos M, Jeraldo P, Chia N, Qu A, Dhillon AS, Konkel ME, Nelson KE, White BA, Goldenfeld N. Robust computational analysis of rRNA hypervariable tag datasets. Plos One. 5: e15220. PMID 21217830 DOI: 10.1371/journal.pone.0015220  0.96
2010 Chia N, Cann I, Olsen GJ. Evolution of DNA replication protein complexes in eukaryotes and Archaea. Plos One. 5: e10866. PMID 20532250 DOI: 10.1371/journal.pone.0010866  0.96
2009 Chia N, Golding I, Goldenfeld N. Lambda-prophage induction modeled as a cooperative failure mode of lytic repression. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 030901. PMID 19905052 DOI: 10.1103/PhysRevE.80.030901  0.96
2008 Chia N, Woese CR, Goldenfeld N. A collective mechanism for phase variation in biofilms. Proceedings of the National Academy of Sciences of the United States of America. 105: 14597-602. PMID 18799735 DOI: 10.1073/pnas.0804962105  0.96
2006 Chia N, Bundschuh R. A practical approach to significance assessment in alignment with gaps. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 429-41. PMID 16597250 DOI: 10.1089/cmb.2006.13.429  0.96
2005 Chia N, Bundschuh R. Numerical method for accessing the universal scaling function for a multiparticle discrete time asymmetric exclusion process. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 051102. PMID 16383588 DOI: 10.1103/PhysRevE.72.051102  0.96
2004 Chia N, Bundschuh R. Finite width model sequence comparison. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 021906. PMID 15447514 DOI: 10.1103/PhysRevE.70.021906  0.96
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