Year |
Citation |
Score |
2023 |
Cho SS, Green AT, Hyeon C, Thirumalai D. TMAO Destabilizes RNA Secondary Structure via Direct Hydrogen Bond Interactions. The Journal of Physical Chemistry. B. PMID 36602908 DOI: 10.1021/acs.jpcb.2c05434 |
0.543 |
|
2021 |
Cheung MS, Dima RI, Hyeon C. Tribute to Dave Thirumalai. The Journal of Physical Chemistry. B. 125: 13831-13833. PMID 34965732 DOI: 10.1021/acs.jpcb.1c10029 |
0.411 |
|
2021 |
Bak JH, Kim MH, Liu L, Hyeon C. A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C. Plos Computational Biology. 17: e1008834. PMID 33724986 DOI: 10.1371/journal.pcbi.1008834 |
0.731 |
|
2020 |
Mugnai ML, Hyeon C, Hinczewski M, Thirumalai D. Theoretical perspectives on biological machines Reviews of Modern Physics. 92: 25001. DOI: 10.1103/Revmodphys.92.025001 |
0.635 |
|
2020 |
Hong H, Jo J, Hyeon C, Park H. Thermodynamic cost of synchronizing a population of beating cilia Journal of Statistical Mechanics: Theory and Experiment. 2020: 74001. DOI: 10.1088/1742-5468/Ab9E63 |
0.308 |
|
2020 |
Jung Y, Hyeon C, Ha B. Near-Θ Polymers in a Cylindrical Space Macromolecules. 53: 2412-2419. DOI: 10.1021/Acs.Macromol.9B02370 |
0.314 |
|
2019 |
Thirumalai D, Lorimer GH, Hyeon C. Iterative Annealing Mechanism Explains the Functions of the GroEL and RNA Chaperones. Protein Science : a Publication of the Protein Society. PMID 31800116 DOI: 10.1002/Pro.3795 |
0.414 |
|
2019 |
Liu L, Kim MH, Hyeon C. Heterogeneous Loop Model to Infer 3D Chromosome Structures from Hi-C. Biophysical Journal. PMID 31337548 DOI: 10.1016/J.Bpj.2019.06.032 |
0.308 |
|
2019 |
Thirumalai D, Hyeon C, Zhuravlev PI, Lorimer GH. Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines. Chemical Reviews. PMID 31017391 DOI: 10.1021/Acs.Chemrev.8B00760 |
0.565 |
|
2018 |
Liu L, Shi G, Thirumalai D, Hyeon C. Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci. Plos Computational Biology. 14: e1006617. PMID 30507936 DOI: 10.1371/Journal.Pcbi.1006617 |
0.514 |
|
2018 |
Shi G, Liu L, Hyeon C, Thirumalai D. Interphase human chromosome exhibits out of equilibrium glassy dynamics. Nature Communications. 9: 3161. PMID 30089831 DOI: 10.1038/S41467-018-05606-6 |
0.502 |
|
2018 |
Bak JH, Jang SJ, Hyeon C. Implications for human odor sensing revealed from the statistics of odorant-receptor interactions. Plos Computational Biology. 14: e1006175. PMID 29782484 DOI: 10.1371/Journal.Pcbi.1006175 |
0.727 |
|
2018 |
Thirumalai D, Hyeon C. Signalling networks and dynamics of allosteric transitions in bacterial chaperonin GroEL: implications for iterative annealing of misfolded proteins. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29735736 DOI: 10.1098/Rstb.2017.0182 |
0.543 |
|
2017 |
Chakrabarti S, Hyeon C, Ye X, Lorimer GH, Thirumalai D. Molecular chaperones maximize the native state yield on biological times by driving substrates out of equilibrium. Proceedings of the National Academy of Sciences of the United States of America. PMID 29217641 DOI: 10.1073/Pnas.1712962114 |
0.579 |
|
2017 |
Lee Y, Thirumalai D, Hyeon C. Ultrasensitivity of water exchange kinetics to the size of metal ion. Journal of the American Chemical Society. PMID 28853881 DOI: 10.1021/Jacs.7B04198 |
0.503 |
|
2017 |
Reddy BJN, Tripathy S, Vershinin M, Tanenbaum M, Xu J, Mattson-Hoss M, Arabi K, Chapman D, Doolin T, Hyeon C, Gross SP. Heterogeneity in Kinesin function. Traffic (Copenhagen, Denmark). PMID 28731566 DOI: 10.1111/Tra.12504 |
0.323 |
|
2017 |
Hyeon C, Thirumalai D. Ripping RNA by Force Using Gaussian Network Models. The Journal of Physical Chemistry. B. 121: 3515-3522. PMID 28423909 DOI: 10.1021/Acs.Jpcb.6B09402 |
0.587 |
|
2017 |
Liu L, Hyeon C. Distinct Chain Organizing Principles of Proteins and RNA Biophysical Journal. 112: 369a. DOI: 10.1016/J.Bpj.2016.11.2001 |
0.34 |
|
2016 |
Hwang W, Lee IB, Hong SC, Hyeon C. Decoding Single Molecule Time Traces with Dynamic Disorder. Plos Computational Biology. 12: e1005286. PMID 28027304 DOI: 10.1371/Journal.Pcbi.1005286 |
0.364 |
|
2016 |
Jeon C, Hyeon C, Jung Y, Ha BY. How are molecular crowding and the spatial organization of a biopolymer interrelated. Soft Matter. PMID 27858047 DOI: 10.1039/C6Sm01924B |
0.333 |
|
2016 |
Lee Y, Kim S, Choi S, Hyeon C. Ultraslow Water-Mediated Transmembrane Interactions Regulate the Activation of A2A Adenosine Receptor. Biophysical Journal. 111: 1180-91. PMID 27653477 DOI: 10.1016/J.Bpj.2016.08.002 |
0.312 |
|
2016 |
Hinczewski M, Hyeon C, Thirumalai D. Directly measuring single-molecule heterogeneity using force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 27317744 DOI: 10.1073/Pnas.1518389113 |
0.728 |
|
2016 |
Liu L, Hyeon C. Contact Statistics Highlight Distinct Organizing Principles of Proteins and RNA. Biophysical Journal. 110: 2320-2327. PMID 27276250 DOI: 10.1016/J.Bpj.2016.04.020 |
0.398 |
|
2016 |
Kim S, Hyeon C. Effect of Internal Water Dynamics on the Activation Mechanism of β2-Adrenergic Receptors Biophysical Journal. 110: 89a. DOI: 10.1016/J.Bpj.2015.11.538 |
0.316 |
|
2016 |
Lee Y, Hyeon C. Effect of DMSO on Water Molecules Near Phospholipid Bilayer Surfaces Biophysical Journal. 110: 645a. DOI: 10.1016/J.Bpj.2015.11.3453 |
0.302 |
|
2016 |
Hwang W, Lee I, Hong S, Hyeon C. Decoding Dynamic Disorder in Single Molecule Data Biophysical Journal. 110: 188a. DOI: 10.1016/J.Bpj.2015.11.1048 |
0.36 |
|
2015 |
Kang H, Yoon YG, Thirumalai D, Hyeon C. Confinement-Induced Glassy Dynamics in a Model for Chromosome Organization. Physical Review Letters. 115: 198102. PMID 26588418 DOI: 10.1103/Physrevlett.115.198102 |
0.514 |
|
2015 |
Kang H, Toan NM, Hyeon C, Thirumalai D. Unexpected Swelling of Stiff DNA in a Polydisperse Crowded Environment. Journal of the American Chemical Society. 137: 10970-8. PMID 26267166 DOI: 10.1021/Jacs.5B04531 |
0.51 |
|
2015 |
Kim SE, Lee IB, Hyeon C, Hong SC. Deciphering Kinetic Information from Single-Molecule FRET Data That Show Slow Transitions. The Journal of Physical Chemistry. B. 119: 6974-8. PMID 25989531 DOI: 10.1021/Acs.Jpcb.5B03991 |
0.325 |
|
2015 |
Ryu JK, Min D, Rah SH, Kim SJ, Park Y, Kim H, Hyeon C, Kim HM, Jahn R, Yoon TY. Spring-loaded unraveling of a single SNARE complex by NSF in one round of ATP turnover. Science (New York, N.Y.). 347: 1485-9. PMID 25814585 DOI: 10.1126/Science.Aaa5267 |
0.305 |
|
2015 |
Lin JC, Yoon J, Hyeon C, Thirumalai D. Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches. Methods in Enzymology. 553: 235-58. PMID 25726468 DOI: 10.1016/Bs.Mie.2014.10.062 |
0.593 |
|
2015 |
Kang H, Pincus PA, Hyeon C, Thirumalai D. Effects of macromolecular crowding on the collapse of biopolymers. Physical Review Letters. 114: 068303. PMID 25723249 DOI: 10.1103/Physrevlett.114.068303 |
0.506 |
|
2015 |
Lee Y, Choi S, Hyeon C. Communication over the network of binary switches regulates the activation of A2A adenosine receptor. Plos Computational Biology. 11: e1004044. PMID 25664580 DOI: 10.1371/Journal.Pcbi.1004044 |
0.311 |
|
2014 |
Bae W, Kim K, Min D, Ryu JK, Hyeon C, Yoon TY. Programmed folding of DNA origami structures through single-molecule force control. Nature Communications. 5: 5654. PMID 25469474 DOI: 10.1038/Ncomms6654 |
0.303 |
|
2014 |
Yoon J, Lin JC, Hyeon C, Thirumalai D. Dynamical transition and heterogeneous hydration dynamics in RNA. The Journal of Physical Chemistry. B. 118: 7910-9. PMID 24762118 DOI: 10.1021/Jp500643U |
0.569 |
|
2014 |
Hyeon C, Hinczewski M, Thirumalai D. Evidence of disorder in biological molecules from single molecule pulling experiments. Physical Review Letters. 112: 138101. PMID 24745458 DOI: 10.1103/Physrevlett.112.138101 |
0.708 |
|
2014 |
Lin JC, Hyeon C, Thirumalai D. Sequence-dependent folding landscapes of adenine riboswitch aptamers. Physical Chemistry Chemical Physics : Pccp. 16: 6376-82. PMID 24366448 DOI: 10.1039/C3Cp53932F |
0.566 |
|
2014 |
Yoon Y, Hyeon C. Brownian Dynamics Simulations of a Self-Avoiding Chain Model of a Chromosome in a Spherical Confinement Biophysical Journal. 106: 79a. DOI: 10.1016/J.Bpj.2013.11.512 |
0.313 |
|
2014 |
Bae W, Kim K, Min D, Ryu J, Hyeon C, Yoon T. Single Molecule Force Control Drives the Rapid Assembly of DNA Nanostructure Biophysical Journal. 106: 279a. DOI: 10.1016/J.Bpj.2013.11.1634 |
0.339 |
|
2014 |
Hyeon C, Denesyuk NA, Thirumalai D. Development and applications of coarse-grained models for RNA Israel Journal of Chemistry. DOI: 10.1002/Ijch.201400029 |
0.589 |
|
2013 |
Bae W, Choi MG, Hyeon C, Shin YK, Yoon TY. Correction to "Real-Time Observation of Multiple-Protein Complex Formation with Single-Molecule FRET". Journal of the American Chemical Society. 135: 16242. PMID 24131366 DOI: 10.1021/Ja409056B |
0.304 |
|
2013 |
Hyeon C, Thirumalai D. Generalized iterative annealing model for the action of RNA chaperones. The Journal of Chemical Physics. 139: 121924. PMID 24089736 DOI: 10.1063/1.4818594 |
0.591 |
|
2013 |
Yoon J, Thirumalai D, Hyeon C. Urea-induced denaturation of preQ1-riboswitch. Journal of the American Chemical Society. 135: 12112-21. PMID 23863126 DOI: 10.1021/Ja406019S |
0.576 |
|
2013 |
Bae W, Bae W, Choi MG, Hyeon C, Shin YK, Yoon TY. Real-time observation of multiple-protein complex formation with single-molecule FRET. Journal of the American Chemical Society. 135: 10254-7. PMID 23808880 DOI: 10.1021/Ja404276G |
0.325 |
|
2013 |
Min D, Kim K, Hyeon C, Cho YH, Shin YK, Yoon TY. Mechanical unzipping and rezipping of a single SNARE complex reveals hysteresis as a force-generating mechanism. Nature Communications. 4: 1705. PMID 23591872 DOI: 10.1038/Ncomms2692 |
0.331 |
|
2013 |
Park K, Hyeon C. Counterion-Dependent Folding of Azoarcus Ribozyme by SAXS Profile based Hybrid Simulation Biophysical Journal. 104: 411a-412a. DOI: 10.1016/J.Bpj.2012.11.2295 |
0.403 |
|
2012 |
Lin JC, Hyeon C, Thirumalai D. RNA under tension: Folding Landscapes, Kinetic partitioning Mechanism, and Molecular Tensegrity. The Journal of Physical Chemistry Letters. 3: 3616-3625. PMID 23336034 DOI: 10.1021/Jz301537T |
0.593 |
|
2012 |
Jana B, Hyeon C, Onuchic JN. The origin of minus-end directionality and mechanochemistry of Ncd motors. Plos Computational Biology. 8: e1002783. PMID 23166486 DOI: 10.1371/Journal.Pcbi.1002783 |
0.697 |
|
2012 |
Hyeon C, Lee J, Yoon J, Hohng S, Thirumalai D. Hidden complexity in the isomerization dynamics of Holliday junctions. Nature Chemistry. 4: 907-14. PMID 23089865 DOI: 10.1038/Nchem.1463 |
0.57 |
|
2012 |
Kim WK, Hyeon C, Sung W. Weak temporal signals can synchronize and accelerate the transition dynamics of biopolymers under tension. Proceedings of the National Academy of Sciences of the United States of America. 109: 14410-5. PMID 22908254 DOI: 10.1073/Pnas.1202952109 |
0.378 |
|
2012 |
Hyeon C, Thirumalai D. Multiple barriers in forced rupture of protein complexes. The Journal of Chemical Physics. 137: 055103. PMID 22894385 DOI: 10.1063/1.4739747 |
0.54 |
|
2012 |
Hyeon C, Thirumalai D. Chain length determines the folding rates of RNA. Biophysical Journal. 102: L11-3. PMID 22325296 DOI: 10.1016/J.Bpj.2012.01.003 |
0.549 |
|
2012 |
Hyeon C. Force-induced unbinding dynamics in a multidimensional free energy landscape Bulletin of the Korean Chemical Society. 33: 897-900. DOI: 10.5012/Bkcs.2012.33.3.897 |
0.327 |
|
2012 |
Lee H, Yoo J, Kyung T, Kim T, Hyeon C, Lim D, Heo WD, Yoon T. In Situ Quantitative Imaging of Single-Molecule Co-Immunoprecipitation Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3269 |
0.307 |
|
2012 |
Jana B, Hyeon C, Onuchic JN. Exploring the Origin of Directionality of Ncd Motor using Structure-Based Model Biophysical Journal. 102: 371a. DOI: 10.1016/J.Bpj.2011.11.2028 |
0.687 |
|
2011 |
Hyeon C, Onuchic JN. A structural perspective on the dynamics of kinesin motors. Biophysical Journal. 101: 2749-59. PMID 22261064 DOI: 10.1016/J.Bpj.2011.10.037 |
0.541 |
|
2011 |
Lee Y, Jeong LS, Choi S, Hyeon C. Link between allosteric signal transduction and functional dynamics in a multisubunit enzyme: S-adenosylhomocysteine hydrolase. Journal of the American Chemical Society. 133: 19807-15. PMID 22023331 DOI: 10.1021/Ja2066175 |
0.329 |
|
2011 |
Hyeon C, Thirumalai D. Capturing the essence of folding and functions of biomolecules using coarse-grained models. Nature Communications. 2: 487. PMID 21952221 DOI: 10.1038/Ncomms1481 |
0.564 |
|
2011 |
Morrison G, Hyeon C, Hinczewski M, Thirumalai D. Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments. Physical Review Letters. 106: 138102. PMID 21517423 DOI: 10.1103/Physrevlett.106.138102 |
0.775 |
|
2010 |
Thirumalai D, O'Brien EP, Morrison G, Hyeon C. Theoretical perspectives on protein folding. Annual Review of Biophysics. 39: 159-83. PMID 20192765 DOI: 10.1146/Annurev-Biophys-051309-103835 |
0.678 |
|
2009 |
Priyakumar UD, Hyeon C, Thirumalai D, Mackerell AD. Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases. Journal of the American Chemical Society. 131: 17759-61. PMID 19919063 DOI: 10.1021/Ja905795V |
0.563 |
|
2009 |
Hyeon C, Morrison G, Pincus DL, Thirumalai D. Refolding dynamics of stretched biopolymers upon force quench. Proceedings of the National Academy of Sciences of the United States of America. 106: 20288-93. PMID 19915145 DOI: 10.1073/Pnas.0905764106 |
0.671 |
|
2009 |
Moghaddam S, Caliskan G, Chauhan S, Hyeon C, Briber RM, Thirumalai D, Woodson SA. Metal ion dependence of cooperative collapse transitions in RNA. Journal of Molecular Biology. 393: 753-64. PMID 19712681 DOI: 10.1016/J.Jmb.2009.08.044 |
0.533 |
|
2009 |
Hyeon C, Klumpp S, Onuchic JN. Kinesin's backsteps under mechanical load. Physical Chemistry Chemical Physics : Pccp. 11: 4899-910. PMID 19506765 DOI: 10.1039/B903536B |
0.505 |
|
2009 |
Hyeon C, Jennings PA, Adams JA, Onuchic JN. Ligand-induced global transitions in the catalytic domain of protein kinase A. Proceedings of the National Academy of Sciences of the United States of America. 106: 3023-8. PMID 19204278 DOI: 10.1073/Pnas.0813266106 |
0.532 |
|
2008 |
Pincus DL, Cho SS, Hyeon C, Thirumalai D. Minimal models for proteins and RNA from folding to function. Progress in Molecular Biology and Translational Science. 84: 203-50. PMID 19121703 DOI: 10.1016/S0079-6603(08)00406-6 |
0.681 |
|
2008 |
Hyeon C, Morrison G, Thirumalai D. Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes. Proceedings of the National Academy of Sciences of the United States of America. 105: 9604-9. PMID 18621721 DOI: 10.1073/Pnas.0802484105 |
0.666 |
|
2008 |
Pincus DL, Hyeon C, Thirumalai D. Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. Journal of the American Chemical Society. 130: 7364-72. PMID 18479134 DOI: 10.1021/Ja078326W |
0.546 |
|
2008 |
Toan NM, Morrison G, Hyeon C, Thirumalai D. Kinetics of loop formation in polymer chains. The Journal of Physical Chemistry. B. 112: 6094-106. PMID 18269274 DOI: 10.1021/Jp076510Y |
0.647 |
|
2008 |
Hyeon C, Thirumalai D. Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. Journal of the American Chemical Society. 130: 1538-9. PMID 18186635 DOI: 10.1021/Ja0771641 |
0.569 |
|
2007 |
Mickler M, Dima RI, Dietz H, Hyeon C, Thirumalai D, Rief M. Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations. Proceedings of the National Academy of Sciences of the United States of America. 104: 20268-73. PMID 18079292 DOI: 10.1073/Pnas.0705458104 |
0.58 |
|
2007 |
Hyeon C, Onuchic JN. Mechanical control of the directional stepping dynamics of the kinesin motor. Proceedings of the National Academy of Sciences of the United States of America. 104: 17382-7. PMID 17959770 DOI: 10.1073/Pnas.0708828104 |
0.524 |
|
2007 |
Koculi E, Hyeon C, Thirumalai D, Woodson SA. Charge density of divalent metal cations determines RNA stability. Journal of the American Chemical Society. 129: 2676-82. PMID 17295487 DOI: 10.1021/Ja068027R |
0.551 |
|
2007 |
Hyeon C, Onuchic JN. Internal strain regulates the nucleotide binding site of the kinesin leading head. Proceedings of the National Academy of Sciences of the United States of America. 104: 2175-80. PMID 17287347 DOI: 10.1073/Pnas.0610939104 |
0.492 |
|
2007 |
Hyeon C, Thirumalai D. Mechanical unfolding of RNA: From hairpins to structures with internal multiloops Biophysical Journal. 92: 731-743. PMID 17028142 DOI: 10.1529/Biophysj.106.093062 |
0.609 |
|
2007 |
Hyeon C, Thirumalai D. Measuring the energy landscape roughness and the transition state location of biomolecules using single molecule mechanical unfolding experiments Journal of Physics Condensed Matter. 19. DOI: 10.1088/0953-8984/19/11/113101 |
0.583 |
|
2007 |
Morrison G, Hyeon C, Toan NM, Ha BY, Thirumalai D. Stretching homopolymers Macromolecules. 40: 7343-7353. DOI: 10.1021/ma071117b |
0.392 |
|
2006 |
Hyeon C, Lorimer GH, Thirumalai D. Dynamics of allosteric transitions in GroEL Proceedings of the National Academy of Sciences of the United States of America. 103: 18939-18944. PMID 17135353 DOI: 10.1073/Pnas.0608759103 |
0.506 |
|
2006 |
Hyeon C, Dima RI, Thirumalai D. Size, shape, and flexibility of RNA structures Journal of Chemical Physics. 125. PMID 17129165 DOI: 10.1063/1.2364190 |
0.575 |
|
2006 |
Hyeon C, Dima RI, Thirumalai D. Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins Structure. 14: 1633-1645. PMID 17098189 DOI: 10.1016/J.Str.2006.09.002 |
0.575 |
|
2006 |
Hyeon C, Thirumalai D. Kinetics of interior loop formation in semiflexible chains Journal of Chemical Physics. 124. PMID 16542102 DOI: 10.1063/1.2178805 |
0.548 |
|
2006 |
Hyeon C, Thirumalai D. Forced-unfolding and force-quench refolding of RNA hairpins Biophysical Journal. 90: 3410-3427. PMID 16473903 DOI: 10.1529/Biophysj.105.078030 |
0.597 |
|
2005 |
Caliskan G, Hyeon C, Perez-Salas U, Briber RM, Woodson SA, Thirumalai D. Persistence length changes dramatically as RNA folds. Physical Review Letters. 95: 268303. PMID 16486414 DOI: 10.1103/Physrevlett.95.268303 |
0.506 |
|
2005 |
Thirumalai D, Hyeon C. RNA and protein folding: Common themes and variations Biochemistry. 44: 4957-4970. PMID 15794634 DOI: 10.1021/Bi047314+ |
0.589 |
|
2005 |
Hyeon C, Thirumalai D. Mechanical unfolding of RNA hairpins Proceedings of the National Academy of Sciences of the United States of America. 102: 6789-6794. PMID 15749822 DOI: 10.1073/Pnas.0408314102 |
0.587 |
|
2005 |
Dima RI, Hyeon C, Thirumalai D. Extracting stacking interaction parameters for RNA from the data set of native structures Journal of Molecular Biology. 347: 53-69. PMID 15733917 DOI: 10.1016/J.Jmb.2004.12.012 |
0.553 |
|
2003 |
Hyeon C, Thirumalai D. Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments? Proceedings of the National Academy of Sciences of the United States of America. 100: 10249-53. PMID 12934020 DOI: 10.1073/Pnas.1833310100 |
0.561 |
|
1997 |
Jung Y, Hyeon C, Shin S, Lee S. Effects of a quantum-mechanically driven two-state gating mode on the diffusion-influenced bimolecular reactions The Journal of Chemical Physics. 107: 9864-9877. DOI: 10.1063/1.475284 |
0.621 |
|
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