Edward Lyman, Ph.D. - Publications

2004 Virginia Polytechnic and State University, United States 
Condensed Matter Physics, Fluid and Plasma Physics

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Lyman E, Sodt AJ. Amphipathic Helices-Wedge? Or Nae Nae? Biophysical Journal. 110: 1-2. PMID 26745402 DOI: 10.1016/j.bpj.2015.11.3513  1
2015 Sodt AJ, Pastor RW, Lyman E. Hexagonal Substructure and Hydrogen Bonding in Liquid-Ordered Phases Containing Palmitoyl Sphingomyelin. Biophysical Journal. 109: 948-55. PMID 26331252 DOI: 10.1016/j.bpj.2015.07.036  1
2015 Lyman E. Retinal Flips the Script. Biophysical Journal. 108: 2754. PMID 26083910 DOI: 10.1016/j.bpj.2015.05.002  1
2014 Sodt AJ, Sandar ML, Gawrisch K, Pastor RW, Lyman E. The molecular structure of the liquid-ordered phase of lipid bilayers. Journal of the American Chemical Society. 136: 725-32. PMID 24345334 DOI: 10.1021/ja4105667  1
2013 Lee JY, Patel R, Lyman E. Ligand-dependent cholesterol interactions with the human A(2A) adenosine receptor. Chemistry and Physics of Lipids. 169: 39-45. PMID 23454349 DOI: 10.1016/j.chemphyslip.2013.02.002  1
2013 Cui H, Mim C, Vázquez FX, Lyman E, Unger VM, Voth GA. Understanding the role of amphipathic helices in N-BAR domain driven membrane remodeling. Biophysical Journal. 104: 404-11. PMID 23442862 DOI: 10.1016/j.bpj.2012.12.006  1
2012 Lee JY, Lyman E. Predictions for cholesterol interaction sites on the A2A adenosine receptor. Journal of the American Chemical Society. 134: 16512-5. PMID 23005256 DOI: 10.1021/ja307532d  1
2012 Lai CL, Jao CC, Lyman E, Gallop JL, Peter BJ, McMahon HT, Langen R, Voth GA. Membrane binding and self-association of the epsin N-terminal homology domain. Journal of Molecular Biology. 423: 800-17. PMID 22922484 DOI: 10.1016/j.jmb.2012.08.010  1
2012 Lee JY, Lyman E. Agonist dynamics and conformational selection during microsecond simulations of the A(2A) adenosine receptor. Biophysical Journal. 102: 2114-20. PMID 22824275 DOI: 10.1016/j.bpj.2012.03.061  1
2012 Mim C, Cui H, Gawronski-Salerno JA, Frost A, Lyman E, Voth GA, Unger VM. Structural basis of membrane bending by the N-BAR protein endophilin. Cell. 149: 137-45. PMID 22464326 DOI: 10.1016/j.cell.2012.01.048  1
2011 Lyman E, Cui H, Voth GA. Reconstructing protein remodeled membranes in molecular detail from mesoscopic models. Physical Chemistry Chemical Physics : Pccp. 13: 10430-6. PMID 21503332 DOI: 10.1039/c0cp02978e  1
2011 Cui H, Lyman E, Voth GA. Mechanism of membrane curvature sensing by amphipathic helix containing proteins. Biophysical Journal. 100: 1271-9. PMID 21354400 DOI: 10.1016/j.bpj.2011.01.036  1
2010 Lyman E, Cui H, Voth GA. Water under the BAR. Biophysical Journal. 99: 1783-90. PMID 20858422 DOI: 10.1016/j.bpj.2010.06.074  1
2010 Ayton GS, Lyman E, Voth GA. Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales. Faraday Discussions. 144: 347-57; discussion 4. PMID 20158037 DOI: 10.1039/b901996k  1
2010 Pfaendtner J, Lyman E, Pollard TD, Voth GA. Structure and dynamics of the actin filament. Journal of Molecular Biology. 396: 252-63. PMID 19931282 DOI: 10.1016/j.jmb.2009.11.034  1
2009 Lyman E, Higgs C, Kim B, Lupyan D, Shelley JC, Farid R, Voth GA. A role for a specific cholesterol interaction in stabilizing the Apo configuration of the human A(2A) adenosine receptor. Structure (London, England : 1993). 17: 1660-8. PMID 20004169 DOI: 10.1016/j.str.2009.10.010  1
2009 Ayton GS, Lyman E, Krishna V, Swenson RD, Mim C, Unger VM, Voth GA. New insights into BAR domain-induced membrane remodeling. Biophysical Journal. 97: 1616-25. PMID 19751666 DOI: 10.1016/j.bpj.2009.06.036  1
2009 Lyman E, Zuckerman DM. Resampling improves the efficiency of a "fast-switch" equilibrium sampling protocol. The Journal of Chemical Physics. 130: 081102. PMID 19256587 DOI: 10.1063/1.3081626  1
2008 Liu P, Shi Q, Lyman E, Voth GA. Reconstructing atomistic detail for coarse-grained models with resolution exchange. The Journal of Chemical Physics. 129: 114103. PMID 19044946 DOI: 10.1063/1.2976663  1
2008 Lyman E, Pfaendtner J, Voth GA. Systematic multiscale parameterization of heterogeneous elastic network models of proteins. Biophysical Journal. 95: 4183-92. PMID 18658214 DOI: 10.1529/biophysj.108.139733  1
2007 Lyman E, Zuckerman DM. On the structural convergence of biomolecular simulations by determination of the effective sample size. The Journal of Physical Chemistry. B. 111: 12876-82. PMID 17935314 DOI: 10.1021/jp073061t  1
2007 Lyman E, Zuckerman DM. Annealed importance sampling of peptides. The Journal of Chemical Physics. 127: 065101. PMID 17705625 DOI: 10.1063/1.2754267  1
2006 Lyman E, Zuckerman DM. Resolution Exchange Simulation with Incremental Coarsening. Journal of Chemical Theory and Computation. 2: 656-66. PMID 26626672 DOI: 10.1021/ct050337x  1
2006 Zuckerman DM, Lyman E. A Second Look at Canonical Sampling of Biomolecules using Replica Exchange Simulation. Journal of Chemical Theory and Computation. 2: 12001202. PMID 19043602 DOI: 10.1021/ct0600464  1
2006 Lyman E, Zuckerman DM. Ensemble-based convergence analysis of biomolecular trajectories. Biophysical Journal. 91: 164-72. PMID 16617086 DOI: 10.1529/biophysj.106.082941  1
2006 Lyman E, Ytreberg FM, Zuckerman DM. Resolution exchange simulation. Physical Review Letters. 96: 028105. PMID 16486650 DOI: 10.1103/PhysRevLett.96.028105  1
2005 Lyman E, Schmittmann B. Steady states of a nonequilibrium lattice gas. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 036127. PMID 16241535 DOI: 10.1103/PhysRevE.72.036127  1
2002 Lyman E, Schmittmann B. Phase diagram of a driven interacting three-state lattice gas Journal of Physics a: Mathematical and General. 35. DOI: 10.1088/0305-4470/35/16/102  1
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