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Dapeng Bi, Ph.D. - Publications

Affiliations: 
2006-2012 Physics Brandeis University, Waltham, MA, United States 
 2012-2015 Physics Syracuse University, Syracuse, NY, United States 
 2015-2016 Center for Studies in Physics and Biology Rockefeller University, New York, NY, United States 
 2017- Physics Northeastern University, Boston, MA, United States 
Area:
Soft Condensed Matter, Granular Materials, Jamming, Cell Mechanics, Active Matter, Metamaterials
Website:
dapengbi.com
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Nguyen AQ, Huang J, Bi D. Origin of yield stress and mechanical plasticity in biological tissues. Arxiv. PMID 39279828  0.415
2024 Yang H, Nguyen AQ, Bi D, Buehler MJ, Guo M. Multicell-Fold: geometric learning in folding multicellular life. Arxiv. PMID 39040638  0.365
2024 Divoux T, Agoritsas E, Aime S, Barentin C, Barrat JL, Benzi R, Berthier L, Bi D, Biroli G, Bonn D, Bourrianne P, Bouzid M, Del Gado E, Delanoë-Ayari H, Farain K, et al. Ductile-to-brittle transition and yielding in soft amorphous materials: perspectives and open questions. Soft Matter. PMID 39028363 DOI: 10.1039/d3sm01740k  0.701
2024 Hertaeg MJ, Fielding SM, Bi D. Discontinuous Shear Thickening in Biological Tissue Rheology. Physical Review. X. 14. PMID 38994232 DOI: 10.1103/physrevx.14.011027  0.447
2024 Arora P, Sadhukhan S, Nandi SK, Bi D, Sood AK, Ganapathy R. A shape-driven reentrant jamming transition in confluent monolayers of synthetic cell-mimics. Nature Communications. 15: 5645. PMID 38969629 DOI: 10.1038/s41467-024-49044-z  0.396
2024 Tang Y, Chen S, Bowick MJ, Bi D. Cell Division and Motility Enable Hexatic Order in Biological Tissues. Physical Review Letters. 132: 218402. PMID 38856284 DOI: 10.1103/PhysRevLett.132.218402  0.368
2024 Bermudez A, Latham ZD, Ma AJ, Bi D, Hu JK, Lin NYC. Regulation of Chromatin Modifications through Coordination of Nucleus Size and Epithelial Cell Morphology Heterogeneity. Biorxiv : the Preprint Server For Biology. PMID 38712099 DOI: 10.1101/2024.04.18.590164  0.324
2024 Tang W, Huang J, Pegoraro AF, Zhang JH, Tang Y, Bi D, Kotton DN, Guo M. Nuclear size-regulated emergence of topological packing order on growing human lung alveolospheres. Biorxiv : the Preprint Server For Biology. PMID 38659777 DOI: 10.1101/2024.04.17.589951  0.345
2024 Cai G, Li X, Lin SS, Chen SJ, Rodgers NC, Koning KM, Bi D, Liu AP. Matrix confinement modulates 3D spheroid sorting and burst-like collective migration. Acta Biomaterialia. PMID 38490482 DOI: 10.1016/j.actbio.2024.03.007  0.59
2024 Xie X, Sauer F, Grosser S, Lippoldt J, Warmt E, Das A, Bi D, Fuhs T, Käs JA. Effect of non-linear strain stiffening in eDAH and unjamming. Soft Matter. PMID 38323652 DOI: 10.1039/d3sm00630a  0.583
2024 Nabizadeh M, Nasirian F, Li X, Saraswat Y, Waheibi R, Hsiao LC, Bi D, Ravandi B, Jamali S. Network physics of attractive colloidal gels: Resilience, rigidity, and phase diagram. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316394121. PMID 38194451 DOI: 10.1073/pnas.2316394121  0.51
2023 Fielding SM, Cochran JO, Huang J, Bi D, Marchetti MC. Constitutive model for the rheology of biological tissue. Physical Review. E. 108: L042602. PMID 37978678 DOI: 10.1103/PhysRevE.108.L042602  0.532
2023 Gupta P, Kayal S, Pothapragada SP, Senapati HK, Devendran P, Bi D, Das T. Mechanical imbalance between normal and cancer cells drives epithelial defense against cancer. Biorxiv : the Preprint Server For Biology. PMID 37961252 DOI: 10.1101/2023.09.27.559723  0.384
2023 Li X, Bi D. Nature-inspired designs for disordered acoustic bandgap materials. Soft Matter. PMID 37859575 DOI: 10.1039/d3sm00419h  0.599
2023 Cai G, Li X, Lin SS, Chen S, Koning K, Bi D, Liu AP. Matrix stiffness modulates 3D spheroid sorting and burst-like collective migration. Biorxiv : the Preprint Server For Biology. PMID 37546827 DOI: 10.1101/2023.07.23.549940  0.592
2023 Marzio M, Das A, Fredberg JJ, Bi D. Epithelial layer fluidization by curvature-induced unjamming. Arxiv. PMID 37292460  0.59
2022 Cai G, Nguyen A, Bashirzadeh Y, Lin SS, Bi D, Liu AP. Compressive stress drives adhesion-dependent unjamming transitions in breast cancer cell migration. Frontiers in Cell and Developmental Biology. 10: 933042. PMID 36268514 DOI: 10.3389/fcell.2022.933042  0.416
2022 Huang J, Cochran JO, Fielding SM, Marchetti MC, Bi D. Shear-Driven Solidification and Nonlinear Elasticity in Epithelial Tissues. Physical Review Letters. 128: 178001. PMID 35570431 DOI: 10.1103/PhysRevLett.128.178001  0.528
2021 Yang H, Pegoraro AF, Han Y, Tang W, Abeyaratne R, Bi D, Guo M. Configurational fingerprints of multicellular living systems. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34716269 DOI: 10.1073/pnas.2109168118  0.317
2020 Mitchel JA, Das A, O'Sullivan MJ, Stancil IT, DeCamp SJ, Koehler S, Ocaña OH, Butler JP, Fredberg JJ, Nieto MA, Bi D, Park JA. In primary airway epithelial cells, the unjamming transition is distinct from the epithelial-to-mesenchymal transition. Nature Communications. 11: 5053. PMID 33028821 DOI: 10.1038/s41467-020-18841-7  0.597
2020 O'Sullivan MJ, Mitchel JA, Das A, Koehler S, Levine H, Bi D, Nagel ZD, Park JA. Irradiation Induces Epithelial Cell Unjamming. Frontiers in Cell and Developmental Biology. 8: 21. PMID 32117962 DOI: 10.3389/Fcell.2020.00021  0.57
2019 Ajeti V, Tabatabai AP, Fleszar AJ, Staddon MF, Seara DS, Suarez C, Yousafzai MS, Bi D, Kovar DR, Banerjee S, Murrell MP. Wound Healing Coordinates Actin Architectures to Regulate Mechanical Work. Nature Physics. 15: 696-705. PMID 31897085 DOI: 10.1038/S41567-019-0485-9  0.621
2019 Kim JH, Pegoraro AF, Das A, Koehler SA, Ujwary SA, Lan B, Mitchel JA, Atia L, He S, Wang K, Bi D, Zaman MH, Park JA, Butler JP, Lee KH, et al. Unjamming and collective migration in MCF10A breast cancer cell lines. Biochemical and Biophysical Research Communications. PMID 31699371 DOI: 10.1016/J.Bbrc.2019.10.188  0.623
2019 Li X, Das A, Bi D. Mechanical Heterogeneity in Tissues Promotes Rigidity and Controls Cellular Invasion. Physical Review Letters. 123: 058101. PMID 31491312 DOI: 10.1103/Physrevlett.123.058101  0.739
2019 Lin SZ, Bi D, Li B, Feng XQ. Dynamic instability and migration modes of collective cells in channels. Journal of the Royal Society, Interface. 16: 20190258. PMID 31362619 DOI: 10.1098/Rsif.2019.0258  0.455
2019 Yan L, Bi D. Multicellular Rosettes Drive Fluid-solid Transition in Epithelial Tissues Physical Review X. 9: 11029. DOI: 10.1103/Physrevx.9.011029  0.474
2019 Murrell M, Banerjee S, Ajeti V, Tabatabai P, Fleszar A, Staddon M, Seara D, Suarez C, Muhammad S, Bi D, Kovar D. Work and Dissipation in the Cell Cytoskeleton Biophysical Journal. 116: 3a. DOI: 10.1016/J.Bpj.2018.11.040  0.576
2018 Staddon MF, Bi D, Tabatabai AP, Ajeti V, Murrell MP, Banerjee S. Cooperation of dual modes of cell motility promotes epithelial stress relaxation to accelerate wound healing. Plos Computational Biology. 14: e1006502. PMID 30273354 DOI: 10.1371/Journal.Pcbi.1006502  0.651
2018 Atia L, Bi D, Sharma Y, Mitchel JA, Gweon B, Koehler S, DeCamp SJ, Lan B, Kim JH, Hirsch R, Pegoraro AF, Lee KH, Starr JR, Weitz DA, Martin AC, et al. Geometric constraints during epithelial jamming. Nature Physics. 14: 613-620. PMID 30151030 DOI: 10.1038/S41567-018-0089-9  0.432
2018 Czajkowski M, Bi D, Manning ML, Marchetti MC. Hydrodynamics of shape-driven rigidity transitions in motile tissues. Soft Matter. PMID 29938290 DOI: 10.1039/C8Sm00446C  0.769
2018 Li X, Das A, Bi D. Biological tissue-inspired tunable photonic fluid. Proceedings of the National Academy of Sciences of the United States of America. PMID 29891685 DOI: 10.1073/Pnas.1715810115  0.689
2018 Giavazzi F, Paoluzzi M, Macchi M, Bi D, Scita G, Manning ML, Cerbino R, Marchetti MC. Flocking transitions in confluent tissues. Soft Matter. PMID 29693694 DOI: 10.1039/C8Sm00126J  0.81
2017 Yang X, Bi D, Czajkowski M, Merkel M, Manning ML, Marchetti MC. Correlating cell shape and cellular stress in motile confluent tissues. Proceedings of the National Academy of Sciences of the United States of America. PMID 29138312 DOI: 10.1073/Pnas.1705921114  0.735
2016 Bi D, Yang X, Marchetti MC, Manning ML. Motility-driven glass and jamming transitions in biological tissues. Physical Review. X. 6. PMID 28966874 DOI: 10.1103/Physrevx.6.021011  0.809
2016 Sarkar S, Bi D, Zhang J, Ren J, Behringer RP, Chakraborty B. Shear-induced rigidity of frictional particles: Analysis of emergent order in stress space. Physical Review. E. 93: 042901. PMID 27176374 DOI: 10.1103/Physreve.93.042901  0.65
2016 Bi D, Yang X, Marchetti MC, Manning ML. Motility-driven glass and jamming transitions in biological tissues Physical Review X. 6. DOI: 10.1103/PhysRevX.6.021011  0.729
2015 Park JA, Kim JH, Bi D, Mitchel JA, Qazvini NT, Tantisira K, Park CY, McGill M, Kim SH, Gweon B, Notbohm J, Steward R, Burger S, Randell SH, Kho AT, et al. Unjamming and cell shape in the asthmatic airway epithelium. Nature Materials. 14: 1040-8. PMID 26237129 DOI: 10.1038/Nmat4357  0.68
2015 Bi D, Henkes S, Daniels KE, Chakraborty B. The statistical physics of athermal materials Annual Review of Condensed Matter Physics. 6: 63-83. DOI: 10.1146/Annurev-Conmatphys-031214-014336  0.749
2015 Bi D, Lopez JH, Schwarz JM, Manning ML. A density-independent rigidity transition in biological tissues Nature Physics. DOI: 10.1038/Nphys3471  0.744
2014 Bi D, Lopez JH, Schwarz JM, Manning ML. Energy barriers and cell migration in densely packed tissues. Soft Matter. 10: 1885-90. PMID 24652538 DOI: 10.1039/C3Sm52893F  0.756
2014 Behringer RP, Bi D, Chakraborty B, Clark A, Dijksman J, Ren J, Zhang J. Statistical properties of granular materials near jamming Journal of Statistical Mechanics: Theory and Experiment. 2014. DOI: 10.1088/1742-5468/2014/06/P06004  0.629
2013 Sarkar S, Bi D, Zhang J, Behringer RP, Chakraborty B. Origin of rigidity in dry granular solids. Physical Review Letters. 111: 068301. PMID 23971616 DOI: 10.1103/Physrevlett.111.068301  0.638
2013 Bi D, Zhang J, Behringer RP, Chakraborty B. Fluctuations in shear-jammed states: A statistical ensemble approach Epl. 102. DOI: 10.1209/0295-5075/102/34002  0.662
2011 Bi D, Zhang J, Chakraborty B, Behringer RP. Jamming by shear. Nature. 480: 355-8. PMID 22170683 DOI: 10.1038/Nature10667  0.66
2009 Bi D, Chakraborty B. Rheology of granular materials: dynamics in a stress landscape. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 367: 5073-90. PMID 19933128 DOI: 10.1098/Rsta.2009.0193  0.643
2009 Hartley RR, Behringer RP, Henkes S, Bi D, Chakraborty B. Logarithmic strengthening of granular materials with shear rate Aip Conference Proceedings. 1145: 1089-1092. DOI: 10.1063/1.3179834  0.567
2008 Behringer RP, Bi D, Chakraborty B, Henkes S, Hartley RR. Why do granular materials stiffen with shear rate? Test of novel stress-based statistics. Physical Review Letters. 101: 268301. PMID 19437678 DOI: 10.1103/Physrevlett.101.268301  0.759
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