☰

Saswata Karmakar, Ph.D. - Publications

Affiliations: 
2013 University of Idaho, Moscow, ID, United States 
Area:
Organic Chemistry
Tree Info Similar researchers PubMed Report error

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Shepard CP, Emehiser RG, Karmakar S, Hrdlicka PJ. Factors Impacting Invader-Mediated Recognition of Double-Stranded DNA. Molecules (Basel, Switzerland). 28. PMID 36615321 DOI: 10.3390/molecules28010127  0.784
2022 Emehiser RG, Dhuri K, Shepard C, Karmakar S, Bahal R, Hrdlicka PJ. Serine-γPNA, Invader probes, and chimeras thereof: three probe chemistries that enable sequence-unrestricted recognition of double-stranded DNA. Organic & Biomolecular Chemistry. PMID 36285843 DOI: 10.1039/d2ob01567f  0.801
2021 Adhikari SP, Karmakar S, Hrdlicka PJ. Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA. Organic & Biomolecular Chemistry. PMID 34874037 DOI: 10.1039/d1ob02019f  0.796
2021 Adhikari SP, Vukelich P, Guenther DC, Karmakar S, Hrdlicka PJ. Recognition of double-stranded DNA using LNA-modified toehold Invader probes. Organic & Biomolecular Chemistry. 19: 9276-9290. PMID 34657934 DOI: 10.1039/d1ob01888d  0.805
2020 Guenther DC, Emehiser RG, Inskeep A, Karmakar S, Hrdlicka PJ. Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes. Organic & Biomolecular Chemistry. PMID 32520054 DOI: 10.1039/D0Ob01052A  0.81
2019 Emehiser RG, Hall E, Guenther DC, Karmakar S, Hrdlicka PJ. Head-to-head comparison of LNA, γPNA, INA and Invader probes targeting mixed-sequence double-stranded DNA. Organic & Biomolecular Chemistry. PMID 31681928 DOI: 10.1039/C9Ob02111F  0.822
2019 Adhikari SP, Emehiser RG, Karmakar S, Hrdlicka PJ. Recognition of mixed-sequence DNA targets using spermine-modified Invader probes. Organic & Biomolecular Chemistry. PMID 31469146 DOI: 10.1039/C9Ob01686D  0.806
2019 Karmakar S, Horrocks T, Gibbons BC, Guenther DC, Emehiser R, Hrdlicka PJ. Synthesis and biophysical characterization of oligonucleotides modified with O2'-alkylated RNA monomers featuring substituted pyrene moieties. Organic & Biomolecular Chemistry. 17: 609-621. PMID 30575837 DOI: 10.1039/C8Ob02764A  0.79
2017 Hrdlicka PJ, Karmakar S. 25 years and still going strong: 2'-O-(pyren-1-yl)methylribonucleotides - versatile building blocks for applications in molecular biology, diagnostics and materials science. Organic & Biomolecular Chemistry. PMID 29135014 DOI: 10.1039/C7Ob02152F  0.717
2017 Karmakar S, Guenther DC, Gibbons BC, Hrdlicka PJ. Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2'-triphenylene- and coronene-functionalized RNA monomers. Organic & Biomolecular Chemistry. PMID 29090304 DOI: 10.1039/C7Ob01920C  0.808
2015 Karmakar S, Harcourt EM, Hewings DS, Scherer F, Lovejoy AF, Kurtz DM, Ehrenschwender T, Barandun LJ, Roost C, Alizadeh AA, Kool ET. Corrigendum: Organocatalytic removal of formaldehyde adducts from RNA and DNA bases. Nature Chemistry. 7: 1033. PMID 26587722 DOI: 10.1038/Nchem.2401  0.435
2015 Guenther DC, Karmakar S, Hrdlicka PJ. Bulged Invader probes: activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles. Chemical Communications (Cambridge, England). 51: 15051-4. PMID 26314212 DOI: 10.1039/C5Cc06264K  0.768
2015 Karmakar S, Harcourt EM, Hewings DS, Lovejoy AF, Kurtz DM, Ehrenschwender T, Barandun LJ, Roost C, Alizadeh AA, Kool ET. Organocatalytic removal of formaldehyde adducts from RNA and DNA bases. Nature Chemistry. 7: 752-8. PMID 26291948 DOI: 10.1038/Nchem.2307  0.4
2015 Guenther DC, Anderson GH, Karmakar S, Anderson BA, Didion BA, Guo W, Verstegen JP, Hrdlicka PJ. Invader probes: Harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications. Chemical Science (Royal Society of Chemistry : 2010). 6: 5006-5015. PMID 26240741 DOI: 10.1039/C5Sc01238D  0.791
2015 Anderson BA, Karmakar S, Hrdlicka PJ. Mixed-Sequence Recognition of Double-Stranded DNA Using Enzymatically Stable Phosphorothioate Invader Probes. Molecules (Basel, Switzerland). 20: 13780-93. PMID 26230684 DOI: 10.3390/Molecules200813780  0.821
2014 Karmakar S, Madsen AS, Guenther DC, Gibbons BC, Hrdlicka PJ. Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2'-alkylated RNA monomers. Organic & Biomolecular Chemistry. 12: 7758-73. PMID 25144705 DOI: 10.1039/C4Ob01183J  0.806
2014 Kengne BA, Karmakar S, Kaura M, Sai VV, Corti G, Niraula IB, Larin A, Hall J, Sowell D, Hrdlicka PJ, Dobrokhotov V, McIlroy DN. Self-assembled monolayers of thiols adsorbed on Au/ZnO-functionalized silica nanosprings: photoelectron spectroscopy-analysis and detection of vaporized explosives. Acs Applied Materials & Interfaces. 6: 13355-66. PMID 25019614 DOI: 10.1021/Am504371K  0.582
2013 Karmakar S, Guenther DC, Hrdlicka PJ. Recognition of mixed-sequence DNA duplexes: design guidelines for invaders based on 2'-O-(pyren-1-yl)methyl-RNA monomers. The Journal of Organic Chemistry. 78: 12040-8. PMID 24195730 DOI: 10.1021/Jo402085V  0.807
2013 Didion BA, Karmakar S, Guenther DC, Sau SP, Verstegen JP, Hrdlicka PJ. Invaders: Recognition of Double-Stranded DNA by Using Duplexes Modified with Interstrand Zippers of 2'-O-(Pyren-1-yl)methyl-ribonucleotides. Chembiochem : a European Journal of Chemical Biology. 14: 1534-1538. PMID 24038876 DOI: 10.1002/Cbic.201300414  0.799
2013 Denn B, Karmakar S, Guenther DC, Hrdlicka PJ. Sandwich assay for mixed-sequence recognition of double-stranded DNA: invader-based detection of targets specific to foodborne pathogens. Chemical Communications (Cambridge, England). 49: 9851-3. PMID 24036937 DOI: 10.1039/C3Cc45705B  0.721
2013 Sau SP, Madsen AS, Podbevsek P, Andersen NK, Kumar TS, Andersen S, Rathje RL, Anderson BA, Guenther DC, Karmakar S, Kumar P, Plavec J, Wengel J, Hrdlicka PJ. Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA. The Journal of Organic Chemistry. 78: 9560-70. PMID 24032477 DOI: 10.1021/Jo4015936  0.799
2013 Karmakar S, Hrdlicka PJ. DNA strands with alternating incorporations of LNA and 2'-O-(pyren-1-yl)methyluridine: SNP-discriminating RNA detection probes. Chemical Science (Royal Society of Chemistry : 2010). 4: 3447-3454. PMID 23930202 DOI: 10.1039/C3Sc50726B  0.751
2011 Karmakar S, Anderson BA, Rathje RL, Andersen S, Jensen TB, Nielsen P, Hrdlicka PJ. High-affinity DNA targeting using readily accessible mimics of N2'-functionalized 2'-amino-α-L-LNA. The Journal of Organic Chemistry. 76: 7119-31. PMID 21827174 DOI: 10.1021/Jo201095P  0.771
Show low-probability matches.