Year |
Citation |
Score |
2020 |
Xie D, Audi SH, Dash RK. A size-modified poisson-boltzmann ion channel model in a solvent of multiple ionic species: Application to voltage-dependent anion channel. Journal of Computational Chemistry. 41: 218-230. PMID 31845398 DOI: 10.1002/Jcc.26091 |
0.345 |
|
2020 |
Chao Z, Xie D, Sameh AH. Preconditioners for nonsymmetric indefinite linear systems Journal of Computational and Applied Mathematics. 367: 112436. DOI: 10.1016/J.Cam.2019.112436 |
0.347 |
|
2019 |
Li J, Ying J, Xie D. On the analysis and application of an ion size-modified Poisson–Boltzmann equation Nonlinear Analysis-Real World Applications. 47: 188-203. DOI: 10.1016/J.Nonrwa.2018.10.011 |
0.35 |
|
2019 |
Volkmer HW, Xie D. Study of local and nonlocal Poisson–Boltzmann equations for linear and nonlinear models with spherical symmetry Journal of Computational and Applied Mathematics. 362: 653-662. DOI: 10.1016/J.Cam.2018.06.050 |
0.365 |
|
2018 |
Ying J, Xie D. An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule. International Journal For Numerical Methods in Biomedical Engineering. PMID 30021243 DOI: 10.1002/Cnm.3129 |
0.404 |
|
2018 |
Volkmer HW, Xie D. Series solution of a nonlocal dielectric test model for a solute ball with point charges in an ionic solvent Communications in Information and Systems. 18: 251-268. DOI: 10.4310/Cis.2018.V18.N4.A3 |
0.308 |
|
2017 |
Xie Y, Ying J, Xie D. SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation. Journal of Computational Chemistry. PMID 28052351 DOI: 10.1002/Jcc.24703 |
0.348 |
|
2017 |
Ying J, Xie D. A hybrid solver of size modified Poisson–Boltzmann equation by domain decomposition, finite element, and finite difference Applied Mathematical Modelling. 58: 166-180. DOI: 10.1016/J.Apm.2017.09.026 |
0.397 |
|
2016 |
Xie D, Liu JL, Eisenberg B. Nonlocal Poisson-Fermi model for ionic solvent. Physical Review. E. 94: 012114. PMID 27575084 DOI: 10.1103/Physreve.94.012114 |
0.362 |
|
2016 |
Xie D, Volkmer HW, Ying J. Analytical solutions of nonlocal Poisson dielectric models with multiple point charges inside a dielectric sphere. Physical Review. E. 93: 043304. PMID 27176425 DOI: 10.1103/Physreve.93.043304 |
0.36 |
|
2016 |
Xie D, Jiang Y. A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules Journal of Computational Physics. 322: 1-20. DOI: 10.1016/J.Jcp.2016.06.028 |
0.39 |
|
2015 |
Li J, Xie D. A new linear Poisson-Boltzmann equation and finite element solver by solution decomposition approach Communications in Mathematical Sciences. 13: 315-325. DOI: 10.4310/Cms.2015.V13.N2.A2 |
0.39 |
|
2015 |
Jiang Y, Xie Y, Ying J, Xie D, Yu Z. SDPBS Web Server for Calculation of Electrostatics of Ionic Solvated Biomolecules Computational and Mathematical Biophysics. 3. DOI: 10.1515/Mlbmb-2015-0011 |
0.354 |
|
2015 |
Xie D, Li J. A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent Nonlinear Analysis: Real World Applications. 21: 185-196. DOI: 10.1016/J.Nonrwa.2014.07.008 |
0.432 |
|
2015 |
Ying J, Xie D. A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule Journal of Computational Physics. 298: 636-651. DOI: 10.1016/J.Jcp.2015.06.016 |
0.418 |
|
2015 |
Xie D, Ying J. A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation Journal of Computational and Applied Mathematics. DOI: 10.1016/J.Cam.2016.01.005 |
0.444 |
|
2014 |
Jiang Y, Ying J, Xie D. A Poisson-Boltzmann Equation Test Model for Protein in Spherical Solute Region and its Applications Molecular Based Mathematical Biology. 2: 86-97. DOI: 10.2478/Mlbmb-2014-0006 |
0.339 |
|
2014 |
Xie D. New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics Journal of Computational Physics. 275: 294-309. DOI: 10.1016/J.Jcp.2014.07.012 |
0.393 |
|
2013 |
Xie D, Volkmer HW. A modified nonlocal continuum electrostatic model for protein in water and its analytical solutions for ionic born models Communications in Computational Physics. 13: 174-194. DOI: 10.4208/Cicp.170811.211011S |
0.357 |
|
2013 |
Xie D, Jiang Y, Scott LR. Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent Siam Journal On Scientific Computing. 35. DOI: 10.1137/120899078 |
0.429 |
|
2012 |
Xie D, Jiang Y, Brune P, Scott LR. A fast solver for a nonlocal dielectric continuum model Siam Journal On Scientific Computing. 34: B107-B126. DOI: 10.1137/110839254 |
0.412 |
|
2011 |
Xie D. An improved approximate Newton method for implicit Runge-Kutta formulas Journal of Computational and Applied Mathematics. 235: 5249-5258. DOI: 10.1016/J.Cam.2011.05.027 |
0.422 |
|
2011 |
Xie D, Zarrouk MG. Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization Computational Optimization and Applications. 48: 213-232. DOI: 10.1007/S10589-009-9252-7 |
0.397 |
|
2011 |
Xie D, Scott LR. A new boundary integral equation for molecular electrostatics with charges over whole space Bit Numerical Mathematics. 51: 1051-1071. DOI: 10.1007/S10543-011-0329-1 |
0.335 |
|
2009 |
Xie D, Ni Q. An incomplete Hessian Newton minimization method and its application in a chemical database problem. Computational Optimization and Applications. 44: 467-485. PMID 20445822 DOI: 10.1007/S10589-008-9164-Y |
0.521 |
|
2009 |
Xie D, Dash RK, Beard DA. An Improved Algorithm and Its Parallel Implementation for Solving a General Blood-Tissue Transport and Metabolism Model. Journal of Computational Physics. 228: 7850-7861. PMID 20161089 DOI: 10.1016/J.Jcp.2009.07.024 |
0.355 |
|
2009 |
Xie D. New parallel symmetric SOR preconditioners by multi-type partitioning International Journal of Computer Mathematics. 86: 287-300. DOI: 10.1080/00207160801965313 |
0.305 |
|
2007 |
Xie D, Zhou S. A new minimization protocol for solving nonlinear Poisson–Boltzmann mortar finite element equation Bit Numerical Mathematics. 47: 853-871. DOI: 10.1007/S10543-007-0145-9 |
0.389 |
|
2006 |
Xie D. A new block parallel sor method and its analysis Siam Journal On Scientific Computing. 27: 1513-1533. DOI: 10.1137/040604777 |
0.419 |
|
2005 |
Xie J, Butko P, Xie D. Molecular dynamics simulations of the cytolytic toxin Cyt1A in solution. Ieee Transactions On Nanobioscience. 4: 235-40. PMID 16220687 DOI: 10.1109/Tnb.2005.853659 |
0.317 |
|
2004 |
Xie D. Analysis of a class of parallel multigrid smoothers Bit Numerical Mathematics. 44: 813-828. DOI: 10.1007/S10543-004-3830-Y |
0.329 |
|
2003 |
Xie D, Singh SB, Fluder EM, Schlick T. Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases Mathematical Programming, Series B. 95: 161-185. DOI: 10.1007/S10107-002-0345-7 |
0.342 |
|
2002 |
Xie D, Schlick T. A more lenient stopping rule for line search algorithms Optimization Methods and Software. 17: 683-700. DOI: 10.1080/1055678021000049363 |
0.36 |
|
2000 |
Xie D, Ridgway Scott L, Schlick T. Analysis of the SHAKE-SOR algorithm for constrained molecular dynamics simulations Methods and Applications of Analysis. 7: 577-590. DOI: 10.4310/Maa.2000.V7.N3.A11 |
0.307 |
|
1999 |
Xie D, Schlick T. Remark on Algorithm 702—the updated truncated Newton minimization package Acm Transactions On Mathematical Software. 25: 108-122. DOI: 10.1145/305658.305698 |
0.34 |
|
1999 |
Xie D, Schlick T. Efficient implementation of the truncated-newton algorithm for large-scale chemistry applications Siam Journal On Optimization. 10: 132-154. DOI: 10.1137/S1052623497313642 |
0.434 |
|
Show low-probability matches. |