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Daniel Garrigan - Publications

Affiliations: 
Biology University of Rochester, Rochester, NY 
Area:
population genetics
Website:
http://kimura.biology.rochester.edu

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wright KM, Rand KA, Kermany A, Noto K, Curtis D, Garrigan D, Slinkov D, Dorfman I, Granka JM, Byrnes J, Myres N, Ball CA, Ruby JG. A Prospective Analysis of Genetic Variants Associated with Human Lifespan. G3 (Bethesda, Md.). 9: 2863-2878. PMID 31484785 DOI: 10.1534/G3.119.400448  0.412
2018 Meiklejohn CD, Landeen EL, Gordon KE, Rzatkiewicz T, Kingan SB, Geneva AJ, Vedanayagam JP, Muirhead CA, Garrigan D, Stern DL, Presgraves DC. Gene flow mediates the role of sex chromosome meiotic drive during complex speciation. Elife. 7. PMID 30543325 DOI: 10.7554/Elife.35468  0.754
2018 Ruby JG, Wright KM, Rand KA, Kermany A, Noto K, Curtis D, Varner N, Garrigan D, Slinkov D, Dorfman I, Granka JM, Byrnes J, Myres N, Ball C. Estimates of the Heritability of Human Longevity Are Substantially Inflated due to Assortative Mating. Genetics. 210: 1109-1124. PMID 30401766 DOI: 10.1534/Genetics.118.301613  0.33
2018 Meiklejohn CD, Landeen EL, Gordon KE, Rzatkiewicz T, Kingan SB, Geneva AJ, Vedanayagam JP, Muirhead CA, Garrigan D, Stern DL, Presgraves DC. Author response: Gene flow mediates the role of sex chromosome meiotic drive during complex speciation Elife. DOI: 10.7554/Elife.35468.049  0.71
2015 Vedanayagam JP, Garrigan D. The effects of natural selection across molecular pathways in Drosophila melanogaster. Bmc Evolutionary Biology. 15: 203. PMID 26391223 DOI: 10.1186/S12862-015-0472-4  0.736
2015 Garrigan D, Kingan SB, Geneva AJ, Vedanayagam JP, Presgraves DC. Genome Diversity and Divergence in Drosophila mauritiana: Multiple Signatures of Faster X Evolution. Genome Biology and Evolution. 7: 1331. PMID 25991815 DOI: 10.1093/gbe/evv029  0.731
2015 Geneva AJ, Muirhead CA, Kingan SB, Garrigan D. A new method to scan genomes for introgression in a secondary contact model. Plos One. 10: e0118621. PMID 25874895 DOI: 10.1371/Journal.Pone.0118621  0.721
2014 Garrigan D, Kingan SB, Geneva AJ, Vedanayagam JP, Presgraves DC. Genome diversity and divergence in Drosophila mauritiana: multiple signatures of faster X evolution. Genome Biology and Evolution. 6: 2444-58. PMID 25193308 DOI: 10.1093/Gbe/Evu198  0.755
2013 Garrigan D. POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments. Evolutionary Bioinformatics Online. 9: 343-53. PMID 24027417 DOI: 10.4137/Ebo.S12751  0.436
2013 Brand CL, Kingan SB, Wu L, Garrigan D. A selective sweep across species boundaries in Drosophila. Molecular Biology and Evolution. 30: 2177-86. PMID 23827876 DOI: 10.1093/Molbev/Mst123  0.437
2012 Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC. Genome sequencing reveals complex speciation in the Drosophila simulans clade. Genome Research. 22: 1499-511. PMID 22534282 DOI: 10.1101/Gr.130922.111  0.707
2010 Geneva A, Garrigan D. Population genomics of secondary contact. Genes. 1: 124-42. PMID 24710014 DOI: 10.3390/Genes1010124  0.72
2010 Kingan SB, Garrigan D, Hartl DL. Recurrent selection on the Winters sex-ratio genes in Drosophila simulans. Genetics. 184: 253-65. PMID 19897749 DOI: 10.1534/Genetics.109.109587  0.53
2010 Shpak M, Wakeley J, Garrigan D, Lewontin RC. A structured coalescent process for seasonally fluctuating populations. Evolution; International Journal of Organic Evolution. 64: 1395-409. PMID 19895551 DOI: 10.1111/J.1558-5646.2009.00891.X  0.657
2010 Garrigan D, Lewontin R, Wakeley J. Measuring the sensitivity of single-locus "neutrality tests" using a direct perturbation approach. Molecular Biology and Evolution. 27: 73-89. PMID 19744997 DOI: 10.1093/Molbev/Msp209  0.642
2009 Garrigan D. Composite likelihood estimation of demographic parameters. Bmc Genetics. 10: 72. PMID 19909534 DOI: 10.1186/1471-2156-10-72  0.409
2008 Garrigan D, Hammer MF. Ancient lineages in the genome: a response to Fagundes et al. Proceedings of the National Academy of Sciences of the United States of America. 105: E3; author reply E4. PMID 18187575 DOI: 10.1073/Pnas.0710521105  0.306
2007 Garrigan D, Kingan SB, Pilkington MM, Wilder JA, Cox MP, Soodyall H, Strassmann B, Destro-Bisol G, de Knijff P, Novelletto A, Friedlaender J, Hammer MF. Inferring human population sizes, divergence times and rates of gene flow from mitochondrial, X and Y chromosome resequencing data. Genetics. 177: 2195-207. PMID 18073427 DOI: 10.1534/Genetics.107.077495  0.479
2007 Garrigan D, Kingan SB. Archaic human admixture: A view from the genome Current Anthropology. 48: 895-902. DOI: 10.1086/523014  0.494
2006 Garrigan D, Hammer MF. Reconstructing human origins in the genomic era. Nature Reviews. Genetics. 7: 669-80. PMID 16921345 DOI: 10.1038/Nrg1941  0.5
2005 Garrigan D, Mobasher Z, Kingan SB, Wilder JA, Hammer MF. Deep haplotype divergence and long-range linkage disequilibrium at xp21.1 provide evidence that humans descend from a structured ancestral population. Genetics. 170: 1849-56. PMID 15937130 DOI: 10.1534/Genetics.105.041095  0.464
2005 Garrigan D, Mobasher Z, Severson T, Wilder JA, Hammer MF. Evidence for archaic Asian ancestry on the human X chromosome. Molecular Biology and Evolution. 22: 189-92. PMID 15483323 DOI: 10.1093/Molbev/Msi013  0.434
2004 Hammer MF, Garrigan D, Wood E, Wilder JA, Mobasher Z, Bigham A, Krenz JG, Nachman MW. Heterogeneous patterns of variation among multiple human x-linked Loci: the possible role of diversity-reducing selection in non-africans. Genetics. 167: 1841-53. PMID 15342522 DOI: 10.1534/Genetics.103.025361  0.48
2004 Behar DM, Garrigan D, Kaplan ME, Mobasher Z, Rosengarten D, Karafet TM, Quintana-Murci L, Ostrer H, Skorecki K, Hammer MF. Contrasting patterns of Y chromosome variation in Ashkenazi Jewish and host non-Jewish European populations. Human Genetics. 114: 354-65. PMID 14740294 DOI: 10.1007/S00439-003-1073-7  0.454
2004 Behar DM, Hammer MF, Garrigan D, Villems R, Bonne-Tamir B, Richards M, Gurwitz D, Rosengarten D, Kaplan M, Della Pergola S, Quintana-Murci L, Skorecki K. MtDNA evidence for a genetic bottleneck in the early history of the Ashkenazi Jewish population. European Journal of Human Genetics : Ejhg. 12: 355-64. PMID 14722586 DOI: 10.1038/Sj.Ejhg.5201156  0.425
2003 Garrigan D, Hedrick PW. Perspective: detecting adaptive molecular polymorphism: lessons from the MHC. Evolution; International Journal of Organic Evolution. 57: 1707-22. PMID 14503614 DOI: 10.1111/J.0014-3820.2003.Tb00580.X  0.381
2003 Hammer MF, Blackmer F, Garrigan D, Nachman MW, Wilder JA. Human population structure and its effects on sampling Y chromosome sequence variation. Genetics. 164: 1495-509. PMID 12930755  0.309
2002 Garrigan D, Marsh PC, Dowling TE. Long-term effective population size of three endangered Colorado River fishes Animal Conservation. 5: 95-102. DOI: 10.1017/S1367943002002135  0.414
2001 Garrigan D, Hedrick PW. Class I MHC polymorphism and evolution in endangered California Chinook and other Pacific salmon. Immunogenetics. 53: 483-9. PMID 11685459 DOI: 10.1007/S002510100352  0.358
2001 Gutierrez-Espeleta GA, Hedrick PW, Kalinowski ST, Garrigan D, Boyce WM. Is the decline of desert bighorn sheep from infectious disease the result of low MHC variation? Heredity. 86: 439-50. PMID 11520344 DOI: 10.1046/J.1365-2540.2001.00853.X  0.402
2000 Edwards SV, Gasper J, Garrigan D, Martindale D, Koop BF. A 39-kb sequence around a blackbird Mhc class II gene: ghost of selection past and songbird genome architecture. Molecular Biology and Evolution. 17: 1384-95. PMID 10958854 DOI: 10.1093/Oxfordjournals.Molbev.A026421  0.441
1999 Edwards SV, Hess CM, Gasper J, Garrigan D. Toward an evolutionary genomics of the avian Mhc. Immunological Reviews. 167: 119-32. PMID 10319255 DOI: 10.1111/J.1600-065X.1999.Tb01386.X  0.306
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