| Year |
Citation |
Score |
| 2019 |
Wichman HA, Scott L, Howell EK, Martinez AR, Yang L, Baker RJ. Flying Around in the Genome: Characterization of LINE-1 in Chiroptera. Special Publications (Texas Tech University. Museum). 71: 379-392. PMID 32095030 |
0.313 |
|
| 2019 |
Faber MS, Van Leuven J, Ederer M, Sapozhnikov Y, Wilson ZL, Wichman HA, Whitehead TA, Miller CR. Saturation mutagenesis genome engineering of infective ΦX174 bacteriophage via unamplified oligo pools and golden gate assembly. Acs Synthetic Biology. PMID 31825605 DOI: 10.1021/Acssynbio.9B00411 |
0.342 |
|
| 2019 |
Yang L, Scott L, Wichman HA. Tracing the history of LINE and SINE extinction in sigmodontine rodents. Mobile Dna. 10: 22. PMID 31139266 DOI: 10.1186/S13100-019-0164-5 |
0.384 |
|
| 2017 |
Miller CR, Van Leuven JT, Wichman HA, Joyce P. Selecting among three basic fitness landscape models: Additive, multiplicative and stickbreaking. Theoretical Population Biology. PMID 29198859 DOI: 10.1016/J.Tpb.2017.10.006 |
0.327 |
|
| 2016 |
Miller CR, Nagel AC, Scott L, Settles M, Joyce P, Wichman HA. Love the one you're with: replicate viral adaptations converge on the same phenotypic change. Peerj. 4: e2227. PMID 27547540 DOI: 10.7717/Peerj.2227 |
0.396 |
|
| 2016 |
Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, Ytreberg FM. Initiating a watch list for Ebola virus antibody escape mutations. Peerj. 4: e1674. PMID 26925318 DOI: 10.7717/Peerj.1674 |
0.324 |
|
| 2016 |
Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Brown CJ, Wichman HA, Ytreberg FM. Biophysical Implications of Ebola Virus Evolution Biophysical Journal. 110: 494a. DOI: 10.1016/J.Bpj.2015.11.2643 |
0.305 |
|
| 2015 |
Sotero-Caio CG, Volleth M, Hoffmann FG, Scott L, Wichman HA, Yang F, Baker RJ. Integration of molecular cytogenetics, dated molecular phylogeny, and model-based predictions to understand the extreme chromosome reorganization in the Neotropical genus Tonatia (Chiroptera: Phyllostomidae). Bmc Evolutionary Biology. 15: 220. PMID 26444412 DOI: 10.1186/S12862-015-0494-Y |
0.318 |
|
| 2014 |
McLaughlin RN, Young JM, Yang L, Neme R, Wichman HA, Malik HS. Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency. Plos Genetics. 10: e1004531. PMID 25211013 DOI: 10.1371/Journal.Pgen.1004531 |
0.42 |
|
| 2014 |
Yang L, Brunsfeld J, Scott L, Wichman H. Reviving the dead: history and reactivation of an extinct l1. Plos Genetics. 10: e1004395. PMID 24968166 DOI: 10.1371/Journal.Pgen.1004395 |
0.405 |
|
| 2014 |
Sun C, Wyngaard G, Walton DB, Wichman HA, Mueller RL. Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development. Bmc Genomics. 15: 186. PMID 24618421 DOI: 10.1186/1471-2164-15-186 |
0.344 |
|
| 2013 |
Brown CJ, Millstein J, Williams CJ, Wichman HA. Selection affects genes involved in replication during long-term evolution in experimental populations of the bacteriophage φX174. Plos One. 8: e60401. PMID 23533679 DOI: 10.1371/Journal.Pone.0060401 |
0.353 |
|
| 2012 |
Nagel AC, Joyce P, Wichman HA, Miller CR. Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution. Genetics. 190: 655-67. PMID 22095084 DOI: 10.1534/Genetics.111.132134 |
0.328 |
|
| 2011 |
Lee KH, Miller CR, Nagel AC, Wichman HA, Joyce P, Ytreberg FM. First-step mutations for adaptation at elevated temperature increase capsid stability in a virus. Plos One. 6: e25640. PMID 21980515 DOI: 10.1371/Journal.Pone.0025640 |
0.335 |
|
| 2011 |
Erickson IK, Cantrell MA, Scott L, Wichman HA. Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents. Journal of Virology. 85: 12315-23. PMID 21957310 DOI: 10.1128/Jvi.05180-11 |
0.433 |
|
| 2011 |
Rokyta DR, Joyce P, Caudle SB, Miller C, Beisel CJ, Wichman HA. Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus. Plos Genetics. 7: e1002075. PMID 21655079 DOI: 10.1371/Journal.Pgen.1002075 |
0.366 |
|
| 2011 |
Miller CR, Joyce P, Wichman HA. Mutational effects and population dynamics during viral adaptation challenge current models. Genetics. 187: 185-202. PMID 21041559 DOI: 10.1534/Genetics.110.121400 |
0.435 |
|
| 2010 |
Wichman HA, Brown CJ. Experimental evolution of viruses: Microviridae as a model system. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2495-501. PMID 20643739 DOI: 10.1098/Rstb.2010.0053 |
0.378 |
|
| 2009 |
Rokyta DR, Wichman HA. Genic incompatibilities in two hybrid bacteriophages. Molecular Biology and Evolution. 26: 2831-9. PMID 19726536 DOI: 10.1093/Molbev/Msp199 |
0.365 |
|
| 2009 |
Rokyta DR, Abdo Z, Wichman HA. The genetics of adaptation for eight microvirid bacteriophages. Journal of Molecular Evolution. 69: 229-39. PMID 19693424 DOI: 10.1007/S00239-009-9267-9 |
0.364 |
|
| 2009 |
Cantrell MA, Carstens BC, Wichman HA. X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity. Plos One. 4: e6252. PMID 19603076 DOI: 10.1371/Journal.Pone.0006252 |
0.394 |
|
| 2009 |
Coberly LC, Wei W, Sampson KY, Millstein J, Wichman HA, Krone SM. Space, time, and host evolution facilitate coexistence of competing bacteriophages: theory and experiment. The American Naturalist. 173: E121-38. PMID 19226233 DOI: 10.1086/597226 |
0.315 |
|
| 2008 |
Rokyta DR, Beisel CJ, Joyce P, Ferris MT, Burch CL, Wichman HA. Beneficial fitness effects are not exponential for two viruses. Journal of Molecular Evolution. 67: 368-76. PMID 18779988 DOI: 10.1007/S00239-008-9153-X |
0.354 |
|
| 2008 |
Pepin KM, Wichman HA. Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174. Bmc Evolutionary Biology. 8: 85. PMID 18366653 DOI: 10.1186/1471-2148-8-85 |
0.637 |
|
| 2008 |
Cantrell MA, Scott L, Brown CJ, Martinez AR, Wichman HA. Loss of LINE-1 activity in the megabats. Genetics. 178: 393-404. PMID 18202382 DOI: 10.1534/Genetics.107.080275 |
0.454 |
|
| 2007 |
Pepin KM, Wichman HA. Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage. Evolution; International Journal of Organic Evolution. 61: 1710-24. PMID 17598750 DOI: 10.1111/J.1558-5646.2007.00143.X |
0.61 |
|
| 2007 |
Beisel CJ, Rokyta DR, Wichman HA, Joyce P. Testing the extreme value domain of attraction for distributions of beneficial fitness effects. Genetics. 176: 2441-9. PMID 17565958 DOI: 10.1534/Genetics.106.068585 |
0.33 |
|
| 2006 |
Scott LA, Kuroiwa A, Matsuda Y, Wichman HA. X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO. Cytogenetic and Genome Research. 112: 261-9. PMID 16484782 DOI: 10.1159/000089880 |
0.316 |
|
| 2006 |
Rokyta DR, Burch CL, Caudle SB, Wichman HA. Horizontal gene transfer and the evolution of microvirid coliphage genomes. Journal of Bacteriology. 188: 1134-42. PMID 16428417 DOI: 10.1128/Jb.188.3.1134-1142.2006 |
0.359 |
|
| 2006 |
Pepin KM, Samuel MA, Wichman HA. Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component. Genetics. 172: 2047-56. PMID 16361237 DOI: 10.1534/Genetics.105.049817 |
0.615 |
|
| 2005 |
Cantrell MA, Ederer MM, Erickson IK, Swier VJ, Baker RJ, Wichman HA. MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers. Journal of Virology. 79: 14698-707. PMID 16282470 DOI: 10.1128/Jvi.79.23.14698-14707.2005 |
0.397 |
|
| 2005 |
Rinehart TA, Grahn RA, Wichman HA. SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms. Cytogenetic and Genome Research. 110: 416-25. PMID 16093694 DOI: 10.1159/000084974 |
0.694 |
|
| 2005 |
Grahn RA, Rinehart TA, Cantrell MA, Wichman HA. Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents. Cytogenetic and Genome Research. 110: 407-15. PMID 16093693 DOI: 10.1159/000084973 |
0.702 |
|
| 2005 |
Rokyta DR, Joyce P, Caudle SB, Wichman HA. An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus. Nature Genetics. 37: 441-4. PMID 15778707 DOI: 10.1038/Ng1535 |
0.377 |
|
| 2005 |
Wichman HA, Millstein J, Bull JJ. Adaptive molecular evolution for 13,000 phage generations: A possible arms race Genetics. 170: 19-31. PMID 15687276 DOI: 10.1534/Genetics.104.034488 |
0.317 |
|
| 2002 |
Parish DA, Vise P, Wichman HA, Bull JJ, Baker RJ. Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation. Cytogenetic and Genome Research. 96: 191-7. PMID 12438798 DOI: 10.1159/000063038 |
0.31 |
|
| 2000 |
Wichman HA, Scott LA, Yarber CD, Bull JJ. Experimental evolution recapitulates natural evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 1677-84. PMID 11127915 DOI: 10.1098/Rstb.2000.0731 |
0.32 |
|
| 2000 |
Cantrell MA, Grahn RA, Scott L, Wichman HA. Isolation of markers from recently transposed LINE-1 retrotransposons. Biotechniques. 29: 1310-6. PMID 11126134 DOI: 10.2144/00296Rr02 |
0.589 |
|
| 2000 |
Bull JJ, Badgett MR, Wichman HA. Big-benefit mutations in a bacteriophage inhibited with heat Molecular Biology and Evolution. 17: 942-950. PMID 10833201 DOI: 10.1093/Oxfordjournals.Molbev.A026375 |
0.349 |
|
| 2000 |
Casavant NC, Scott L, Cantrell MA, Wiggins LE, Baker RJ, Wichman HA. The end of the LINE?: Lack of recent L1 activity in a group of South American rodents Genetics. 154: 1809-1817. PMID 10747071 |
0.364 |
|
| 1999 |
Wichman HA, Badgett MR, Scott LA, Boulianne CM, Bull JJ. Different trajectories of parallel evolution during viral adaptation. Science (New York, N.Y.). 285: 422-4. PMID 10411508 DOI: 10.1126/Science.285.5426.422 |
0.328 |
|
| 1998 |
Bull J, Wichman H. A revolution in evolution Science. 281: 1959. PMID 9767038 DOI: 10.1126/Science.281.5385.1959 |
0.342 |
|
| 1997 |
Sawby R, Wichman HA. Analysis of orthologous retrovirus-like elements in the white-footed mouse, Peromyscus leucopus Journal of Molecular Evolution. 44: 74-80. PMID 9010138 DOI: 10.1007/Pl00006123 |
0.36 |
|
| 1996 |
Clough JE, Foster JA, Barnett M, Wichman HA. Computer simulation of transposable element evolution: random template and strict master models. Journal of Molecular Evolution. 42: 52-8. PMID 8576964 DOI: 10.1007/Bf00163211 |
0.333 |
|
| 1996 |
Lee RN, Jaskula JC, van den Bussche RA, Baker RJ, Wichman HA. Retrotransposon Mys was active during evolution of the Peromyscus leucopus-maniculatus complex. Journal of Molecular Evolution. 42: 44-51. PMID 8576963 DOI: 10.1007/Bf00163210 |
0.346 |
|
| 1994 |
Bradley RD, Wichman HA. Rapidly evolving repetitive DNAs in a conservative genome: a test of factors that affect chromosomal evolution. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 2: 354-60. PMID 7981939 DOI: 10.1007/Bf01552794 |
0.353 |
|
| 1994 |
Edwards AR, Van den Bussche RA, Wichman HA, Orser CS. Unusual pattern of bacterial ice nucleation gene evolution. Molecular Biology and Evolution. 11: 911-20. PMID 7815929 DOI: 10.1093/Oxfordjournals.Molbev.A040172 |
0.302 |
|
| 1993 |
Van den Bussche RA, Baker RJ, Wichman HA, Hamilton MJ. Molecular phylogenetics of Stenodermatini bat genera: congruence of data from nuclear and mitochondrial DNA. Molecular Biology and Evolution. 10: 944-59. PMID 8412654 DOI: 10.1093/Oxfordjournals.Molbev.A040060 |
0.31 |
|
| 1993 |
Janecek LL, Longmire JL, Wichman HA, Baker RJ. Genome organization of repetitive elements in the rodent, Peromyscus leucopus Mammalian Genome. 4: 374-381. PMID 8395263 DOI: 10.1007/Bf00360588 |
0.343 |
|
| 1993 |
Martin SL, Wichman HA. Molecular approaches to mammalian retrotransposon isolation Methods in Enzymology. 224: 309-322. PMID 7505378 DOI: 10.1016/0076-6879(93)24023-N |
0.397 |
|
| 1992 |
Hamilton MJ, Hong G, Wichman HA. Intragenomic movement and concerted evolution of satellite DNA in Peromyscus: Evidence from in situ hybridization Cytogenetics and Cell Genetics. 60: 40-44. PMID 1582258 DOI: 10.1159/000133292 |
0.321 |
|
| 1992 |
Wichman HA, Van den Bussche RA, Hamilton MJ, Baker RJ. Transposable elements and the evolution of genome organization in mammals. Genetica. 86: 287-93. PMID 1334913 DOI: 10.1007/Bf00133727 |
0.344 |
|
| 1991 |
Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ. Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution Journal of Heredity. 82: 369-377. PMID 1658126 DOI: 10.1093/Oxfordjournals.Jhered.A111106 |
0.339 |
|
| 1990 |
Baker RJ, Wichman HA. RETROTRANSPOSON MYS IS CONCENTRATED ON THE SEX CHROMOSOMES: IMPLICATIONS FOR COPY NUMBER CONTAINMENT. Evolution; International Journal of Organic Evolution. 44: 2083-2088. PMID 28564430 DOI: 10.1111/J.1558-5646.1990.Tb04313.X |
0.319 |
|
| 1985 |
Wichman HA, Potter SS, Pine DS. Mys, a family of mammalian transposable elements isolated by phylogenetic screening Nature. 317: 77-81. PMID 2993916 DOI: 10.1038/317077A0 |
0.352 |
|
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