Taekjip Ha, Ph.D. - Publications

Physics University of Illinois, Urbana, IL, United States 
Single molecule

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Year Citation  Score
2020 Rhine K, Makurath MA, Liu J, Skanchy S, Lopez C, Catalan KF, Ma Y, Ha T, Chemla YR, Myong S. ALS/FTLD-Linked Mutations in FUS Glycine Residues Cause Accelerated Gelation and Reduced Interactions with Wild-Type FUS. Molecular Cell. PMID 33159856 DOI: 10.1016/j.molcel.2020.10.014  1
2020 Tran T, Mitra J, Ha T, Kavran JM. Increasing kinase domain proximity promotes MST2 autophosphorylation during Hippo signaling. The Journal of Biological Chemistry. PMID 32994222 DOI: 10.1074/jbc.RA120.015723  0.68
2020 Talluri B, Amar K, Saul M, Shireen T, Konjufca V, Ma J, Ha T, Chowdhury F. COL2A1 Is a Novel Biomarker of Melanoma Tumor Repopulating Cells. Biomedicines. 8. PMID 32962144 DOI: 10.3390/biomedicines8090360  0.76
2020 Hua B, Jones CP, Mitra J, Murray PJ, Rosenthal R, Ferré-D'Amaré AR, Ha T. Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape. Nature Communications. 11: 4531. PMID 32913225 DOI: 10.1038/s41467-020-18283-1  0.76
2020 Park S, Shi Y, Kim BC, Jo MH, Cruz LO, Gou Z, Ha T, Lu LF, Reich DH, Chen Y. Force-dependent trans-endocytosis by breast cancer cells depletes costimulatory receptor CD80 and attenuates T cell activation. Biosensors & Bioelectronics. 165: 112389. PMID 32729511 DOI: 10.1016/j.bios.2020.112389  0.96
2020 Liu Y, Zou RS, He S, Nihongaki Y, Li X, Razavi S, Wu B, Ha T. Very fast CRISPR on demand. Science (New York, N.Y.). 368: 1265-1269. PMID 32527834 DOI: 10.1126/science.aay8204  0.92
2020 Huang L, Liao TW, Wang J, Ha T, Lilley DMJ. Crystal structure and ligand-induced folding of the SAM/SAH riboswitch. Nucleic Acids Research. PMID 32520325 DOI: 10.1093/nar/gkaa493  0.8
2020 Paul T, Voter AF, Cueny RR, Gavrilov M, Ha T, Keck JL, Myong S. E. coli Rep helicase and RecA recombinase unwind G4 DNA and are important for resistance to G4-stabilizing ligands. Nucleic Acids Research. PMID 32449930 DOI: 10.1093/nar/gkaa442  1
2020 Korman A, Sun H, Hua B, Yang H, Capilato JN, Paul R, Panja S, Ha T, Greenberg MM, Woodson SA. Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space. Proceedings of the National Academy of Sciences of the United States of America. PMID 32430319 DOI: 10.1073/pnas.2003425117  0.76
2020 Hsu RYC, Lin YC, Redon C, Sun Q, Singh DK, Wang Y, Aggarwal V, Mitra J, Matur A, Moriarity B, Ha T, Aladjem MI, Prasanth KV, Prasanth SG. ORCA/LRWD1 Regulates Homologous Recombination at ALT-Telomeres by Modulating Heterochromatin Organization. Iscience. 23: 101038. PMID 32344376 DOI: 10.1016/j.isci.2020.101038  0.76
2020 Gitler AD, Shorter J, Ha T, Myong S. Just Took a DNA Test, Turns Out 100% Not That Phase. Molecular Cell. 78: 193-194. PMID 32302539 DOI: 10.1016/j.molcel.2020.03.029  1
2020 Jo MH, Li J, Springer TA, Ha T. Integrin-Dependent Difference in Cell Adhesion and Force Exertion Biophysical Journal. 118: 96a. DOI: 10.1016/j.bpj.2019.11.686  0.56
2020 Liu Y, Zou R, Nihongaki Y, He S, Razavi S, Wu B, Ha T. Very Fast CRISPR on Demand Biophysical Journal. 118: 29a. DOI: 10.1016/j.bpj.2019.11.337  0.92
2020 Bianchi DM, Breuer M, Lam V, Poddar A, Wise KS, Hutchison CA, Smith HO, Villa E, Ha T, Glass JI, Luthey-Schulten Z. Modeling the Lipid Metabolism of a Genetically Minimal Cell Biophysical Journal. 118: 346a. DOI: 10.1016/j.bpj.2019.11.1999  0.44
2019 Clark S, Elferich J, Gai J, Goehring A, Mitra J, Ha T, Gouaux E. Strategy for Compositional Analysis of the Hair Cell Mechanotransduction Complex Using TIRF Microscopy. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 25: 1266-1267. PMID 32025193 DOI: 10.1017/s1431927619007062  0.68
2019 Su N, Byrd AK, Bharath SR, Yang O, Jia Y, Tang X, Ha T, Raney KD, Song H. Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases. Nature Communications. 10: 5375. PMID 31772234 DOI: 10.1038/s41467-019-13414-9  0.52
2019 Okafor IC, Singh D, Wang Y, Jung M, Wang H, Mallon J, Bailey S, Lee JK, Ha T. Single molecule analysis of effects of non-canonical guide RNAs and specificity-enhancing mutations on Cas9-induced DNA unwinding. Nucleic Acids Research. PMID 31713616 DOI: 10.1093/nar/gkz1058  0.96
2019 Mohapatra S, Lin CT, Feng XA, Basu A, Ha T. Single-Molecule Analysis and Engineering of DNA Motors. Chemical Reviews. PMID 31661246 DOI: 10.1021/acs.chemrev.9b00361  0.88
2019 Mitra J, Ha T. Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy. Nucleic Acids Research. PMID 31617570 DOI: 10.1093/nar/gkz906  0.68
2019 Mitra J, Ha T. Nanomechanics and co-transcriptional folding of Spinach and Mango. Nature Communications. 10: 4318. PMID 31541108 DOI: 10.1038/s41467-019-12299-y  0.68
2019 Bobrovskyy M, Azam MS, Frandsen JK, Zhang J, Poddar A, Ma X, Henkin TM, Ha T, Vanderpool CK. Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS. Molecular Microbiology. PMID 31340077 DOI: 10.1111/mmi.14355  0.72
2019 Ma Y, Ha T. Fight against background noise in stimulated emission depletion nanoscopy. Physical Biology. PMID 31141791 DOI: 10.1088/1478-3975/ab255c  1
2019 Mitra J, Makurath MA, Ngo TTM, Troitskaia A, Chemla YR, Ha T. Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 30944218 DOI: 10.1073/pnas.1815162116  1
2019 Kim J, Han KY, Khanna N, Ha T, Belmont AS. Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition. Journal of Cell Science. PMID 30858197 DOI: 10.1242/jcs.226563  0.76
2019 Geiger-Schuller K, Mitra J, Ha T, Barrick D. Functional instability allows access to DNA in longer Transcription Activator-Like Effector (TALE) arrays. Elife. 8. PMID 30810525 DOI: 10.7554/eLife.38298  0.68
2019 Schlierf M, Wang G, Chen XS, Ha T. Hexameric helicase G40P unwinds DNA in single base pair steps. Elife. 8. PMID 30688211 DOI: 10.7554/eLife.42001  0.76
2019 Zhou R, Yang O, Déclais AC, Jin H, Gwon GH, Freeman ADJ, Cho Y, Lilley DMJ, Ha T. Junction resolving enzymes use multivalency to keep the Holliday junction dynamic. Nature Chemical Biology. PMID 30664685 DOI: 10.1038/s41589-018-0209-y  0.8
2019 Kothari P, Srivastava V, Aggarwal V, Tchernyshyov I, Van Eyk J, Ha T, Robinson DN. Mapping the Biochemical Interactions of the Mechanoresponsive Contractility Controller Biophysical Journal. 116: 119a-120a. DOI: 10.1016/j.bpj.2018.11.669  0.48
2019 Basu A, Kayikcioglu T, Ngo T, Zhang Q, Cieza Huaman B, Hejna M, Rube T, Song J, Ha T. Measuring the Physical Properties of DNA on a Genomic Scale Biophysical Journal. 116: 22a. DOI: 10.1016/j.bpj.2018.11.162  0.52
2018 Kothari P, Srivastava V, Aggarwal V, Tchernyshyov I, Van Eyk JE, Ha T, Robinson DN. Contractility kits promote assembly of the mechanoresponsive cytoskeletal network. Journal of Cell Science. PMID 30559246 DOI: 10.1242/jcs.226704  0.48
2018 Dubiel K, Myers AR, Kozlov AG, Yang O, Zhang J, Ha T, Lohman TM, Keck JL. Structural Mechanisms of Cooperative DNA Binding by Bacterial Single-Stranded DNA-Binding Proteins. Journal of Molecular Biology. PMID 30472092 DOI: 10.1016/j.jmb.2018.11.019  0.84
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Adariani SR, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Ha T, et al. Publisher Correction: Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. PMID 30327572 DOI: 10.1038/s41592-018-0193-x  0.76
2018 Hellenkamp B, Schmid S, Doroshenko O, Opanasyuk O, Kühnemuth R, Rezaei Adariani S, Ambrose B, Aznauryan M, Barth A, Birkedal V, Bowen ME, Chen H, Cordes T, Eilert T, Fijen C, ... ... Ha T, et al. Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature Methods. 15: 669-676. PMID 30171252 DOI: 10.1038/s41592-018-0085-0  0.76
2018 Hua B, Panja S, Wang Y, Woodson S, Ha T. Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. Journal of the American Chemical Society. PMID 30063835 DOI: 10.1021/jacs.8b03784  0.76
2018 Lee SJ, Syed S, Ha T. Single-Molecule FRET Analysis of Replicative Helicases. Methods in Molecular Biology (Clifton, N.J.). 1805: 233-250. PMID 29971721 DOI: 10.1007/978-1-4939-8556-2_12  0.76
2018 Wang X, Park S, Zeng L, Jain A, Ha T. Toward Single-Cell Single-Molecule Pull-Down. Biophysical Journal. PMID 29804751 DOI: 10.1016/j.bpj.2018.05.013  0.96
2018 Koh HR, Roy R, Sorokina M, Tang GQ, Nandakumar D, Patel SS, Ha T. Correlating Transcription Initiation and Conformational Changes by a Single-Subunit RNA Polymerase with Near Base-Pair Resolution. Molecular Cell. 70: 695-706.e5. PMID 29775583 DOI: 10.1016/j.molcel.2018.04.018  0.68
2018 Singh D, Mallon J, Poddar A, Wang Y, Tippana R, Yang O, Bailey S, Ha T. Real-time observation of DNA target interrogation and product release by the RNA-guided endonuclease CRISPR Cpf1 (Cas12a). Proceedings of the National Academy of Sciences of the United States of America. PMID 29735714 DOI: 10.1073/pnas.1718686115  0.96
2018 Chowdhury F, Doğanay S, Leslie BJ, Singh R, Amar K, Talluri B, Park S, Wang N, Ha T. Cdc42-dependent modulation of rigidity sensing and cell spreading in tumor repopulating cells. Biochemical and Biophysical Research Communications. PMID 29673588 DOI: 10.1016/j.bbrc.2018.04.085  0.76
2018 Singh D, Wang Y, Mallon J, Yang O, Fei J, Poddar A, Ceylan D, Bailey S, Ha T. Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. Nature Structural & Molecular Biology. 25: 347-354. PMID 29622787 DOI: 10.1038/s41594-018-0051-7  0.96
2018 Yang O, Ha T. Single-Molecule Studies of ssDNA-Binding Proteins Exchange. Methods in Enzymology. 600: 463-477. PMID 29458770 DOI: 10.1016/bs.mie.2017.11.017  0.52
2018 Hua B, Wang Y, Park S, Han KY, Singh D, Kim JH, Cheng W, Ha T. Single-molecule centroid localization algorithm improves the accuracy of fluorescence binding assays. Biochemistry. PMID 29457977 DOI: 10.1021/acs.biochem.7b01293  0.96
2018 Zhu W, Kim BC, Wang M, Huang J, Isak A, Bexiga NM, Monticone R, Ha T, Lakatta EG, An SS. TGFβ1 reinforces arterial aging in the vascular smooth muscle cell through a long-range regulation of the cytoskeletal stiffness. Scientific Reports. 8: 2668. PMID 29422510 DOI: 10.1038/s41598-018-20763-w  0.56
2018 Singh D, Ha T. Understanding the molecular mechanisms of CRISPR toolbox using single molecule approaches. Acs Chemical Biology. PMID 29394047 DOI: 10.1021/acschembio.7b00905  0.96
2018 Jo MH, Cottle WT, Ha T. Real-Time Measurement of Molecular Tension during Cell Adhesion and Migration Using Multiplexed Differential Analysis of Tension Gauge Tethers Acs Biomaterials Science & Engineering. 5: 3856-3863. DOI: 10.1021/acsbiomaterials.8b01216  0.56
2018 Kayikcioglu T, Lin C, Ha T. Massively Parallel Measurement of DNA Mismatch Repair Efficiency In Vivo Biophysical Journal. 114: 83a. DOI: 10.1016/j.bpj.2017.11.500  0.4
2018 Wang Y, Singh D, Mallon J, Hua B, Bailey S, Ha T. Simultaneous Real-Time Observation of DNA Unwinding and Nuclease Domain Activation in Cas9-RNA-DNA Complex via Three-Color Single Molecule FRET Biophysical Journal. 114: 572a. DOI: 10.1016/j.bpj.2017.11.3127  0.96
2018 Basu A, Morgan MT, Huaman BC, Kayikcioglu T, Ngo T, Zhang Q, Wolberger C, Ha T. Genome Wide Measurements of the Sequence Dependence of Nucleosomal DNA Flexibility Biophysical Journal. 114: 446a. DOI: 10.1016/j.bpj.2017.11.2465  0.52
2017 Zhang Y, Ha T, Marqusee S. Editorial Overview: Single-Molecule Approaches up to Difficult Challenges in Folding and Dynamics. Journal of Molecular Biology. PMID 29288633 DOI: 10.1016/j.jmb.2017.12.019  0.44
2017 Clatot J, Hoshi M, Wan X, Liu H, Jain A, Shinlapawittayatorn K, Marionneau C, Ficker E, Ha T, Deschênes I. Voltage-gated sodium channels assemble and gate as dimers. Nature Communications. 8: 2077. PMID 29233994 DOI: 10.1038/s41467-017-02262-0  0.76
2017 Fei J, Jadaliha M, Harmon TS, Li ITS, Hua B, Hao Q, Holehouse AS, Reyer M, Sun Q, Freier SM, Pappu RV, Prasanth KV, Ha T. Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution. Journal of Cell Science. PMID 29133588 DOI: 10.1242/jcs.206854  0.76
2017 Figiel M, Krepl M, Park S, Poznański J, Skowronek K, Gołąb A, Ha T, Šponer J, Nowotny M. Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase. The Journal of Biological Chemistry. PMID 29122886 DOI: 10.1074/jbc.M117.798256  0.76
2017 Doğanay S, Lee MY, Baum A, Peh J, Hwang SY, Yoo JY, Hergenrother PJ, García-Sastre A, Myong S, Ha T. Single-cell analysis of early antiviral gene expression reveals a determinant of stochastic IFNB1 expression. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 29098213 DOI: 10.1039/c7ib00146k  1
2017 Abeysirigunawardena SC, Kim H, Lai J, Ragunathan K, Rappé MC, Luthey-Schulten Z, Ha T, Woodson SA. Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nature Communications. 8: 492. PMID 28887451 DOI: 10.1038/s41467-017-00536-1  0.84
2017 Panja S, Hua B, Zegarra D, Ha T, Woodson SA. Metals induce transient folding and activation of the twister ribozyme. Nature Chemical Biology. PMID 28825710 DOI: 10.1038/nchembio.2459  0.76
2017 Singh P, Ramachandran SK, Zhu J, Kim BC, Biswas D, Ha T, Iglesias PA, Li R. Sphingolipids Facilitate Age Asymmetry of Membrane Proteins in Dividing Yeast Cells. Molecular Biology of the Cell. PMID 28768828 DOI: 10.1091/mbc.E17-05-0335  0.88
2017 Li IT, Ha T, Chemla YR. Mapping cell surface adhesion by rotation tracking and adhesion footprinting. Scientific Reports. 7: 44502. PMID 28290531 DOI: 10.1038/srep44502  1
2017 Luca VC, Kim BC, Ge C, Kakuda S, Wu D, Roein-Peikar M, Haltiwanger RS, Zhu C, Ha T, Garcia KC. Notch-Jagged complex structure implicates a catch bond in tuning ligand sensitivity. Science (New York, N.Y.). PMID 28254785 DOI: 10.1126/science.aaf9739  0.88
2017 Xiao J, Ha T. Flipping nanoscopy on its head. Science (New York, N.Y.). 355: 582-584. PMID 28183938 DOI: 10.1126/science.aam5409  1
2017 Lin CT, Tritschler F, Lee KS, Gu M, Rice CM, Ha T. Single-molecule Imaging Reveals the Translocation and DNA looping Dynamics of Hepatitis C Virus NS3 Helicase. Protein Science : a Publication of the Protein Society. PMID 28176403 DOI: 10.1002/pro.3136  0.88
2017 Lin CT, Ha T. Probing Single Helicase Dynamics on Long Nucleic Acids Through Fluorescence-Force Measurement. Methods in Molecular Biology (Clifton, N.J.). 1486: 295-316. PMID 27844433 DOI: 10.1007/978-1-4939-6421-5_11  0.88
2017 Singh D, Mallon J, Tipanna R, Poddar A, Yang O, Bailey S, Ha T. Investigation of DNA Binding, Nucleolysis and Product Release Specificity of RNA Guided Endonuclease CRISPR-Cpf1 Family Reveals Important Differences from Cas9-RNA Biophysical Journal. 112: 472a. DOI: 10.1016/j.bpj.2016.11.2531  0.96
2017 Yoo J, Park S, Kim H, Ha T, Aksimentiev A. High Throughput Simulations Reveal how Sequence and Methylation Control DNA Looping and Self-Association Biophysical Journal. 112: 6a. DOI: 10.1016/j.bpj.2016.11.053  0.76
2016 Masuda I, Igarashi T, Sakaguchi R, Nitharwal RG, Takase R, Han KY, Leslie BJ, Liu C, Gamper H, Ha T, Sanyal S, Hou YM. A genetically encoded fluorescent tRNA is active in live-cell protein synthesis. Nucleic Acids Research. PMID 27956502 DOI: 10.1093/nar/gkw1229  0.96
2016 Rahil Z, Pedron S, Wang X, Ha T, Harley B, Leckband D. Correction: Nanoscale mechanics guides cellular decision making. Integrative Biology : Quantitative Biosciences From Nano to Macro. 8: 1002. PMID 27714010 DOI: 10.1039/c6ib90035f  0.96
2016 Aggarwal V, Ha T. Single-molecule fluorescence microscopy of native macromolecular complexes. Current Opinion in Structural Biology. 41: 225-232. PMID 27662375 DOI: 10.1016/j.sbi.2016.09.006  0.48
2016 Singh D, Sternberg SH, Fei J, Doudna JA, Ha T. Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9. Nature Communications. 7: 12778. PMID 27624851 DOI: 10.1038/ncomms12778  1
2016 Park JM, Kim HI, Han SU, Yang HK, Kim YW, Lee HJ, An JY, Kim MC, Park S, Song KY, Oh SJ, Kong SH, Suh BJ, Yang DH, Ha TK, et al. Who may benefit from robotic gastrectomy?: A subgroup analysis of multicenter prospective comparative study data on robotic versus laparoscopic gastrectomy. European Journal of Surgical Oncology : the Journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology. PMID 27514719 DOI: 10.1016/j.ejso.2016.07.012  0.8
2016 Jung YH, Ha TM, Oh CY, Lee US, Jang JH, Kim J, Park JO, Kang DH. The Effects of an Online Mind-Body Training Program on Stress, Coping Strategies, Emotional Intelligence, Resilience and Psychological State. Plos One. 11: e0159841. PMID 27479499 DOI: 10.1371/journal.pone.0159841  0.6
2016 Rahil Z, Pedron S, Wang X, Ha T, Harley B, Leckband D. Nanoscale mechanics guides cellular decision making. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 27477049 DOI: 10.1039/c6ib00113k  0.96
2016 Husbands A, Aggarwal V, Ha T, Timmermans MC. In Planta Single-Molecule Pull-down (SiMPull) Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. The Plant Cell. PMID 27385814 DOI: 10.1105/tpc.16.00289  0.48
2016 Nelson EV, Schmidt KM, Deflubé LR, Doğanay S, Banadyga L, Olejnik J, Hume AJ, Ryabchikova E, Ebihara H, Kedersha N, Ha T, Mühlberger E. Ebola virus does not induce stress granule formation during infection and sequesters stress granule proteins within viral inclusions. Journal of Virology. PMID 27252530 DOI: 10.1128/JVI.00459-16  0.68
2016 Chowdhury F, Li IT, Ngo TT, Leslie BJ, Kim BC, Sokoloski JE, Weiland E, Wang X, Chemla YR, Lohman TM, Ha T. Defining single molecular forces required for Notch activation using nano yoyo. Nano Letters. PMID 27167603 DOI: 10.1021/acs.nanolett.6b01403  1
2016 Molohon KJ, Blair PM, Park S, Doroghazi JR, Maxson T, Hershfield JR, Flatt KM, Schroeder NE, Ha T, Mitchell DA. Plantazolicin is an ultra-narrow spectrum antibiotic that targets the Bacillus anthracis membrane. Acs Infectious Diseases. 2: 207-220. PMID 27152321 DOI: 10.1021/acsinfecdis.5b00115  0.76
2016 Arauz E, Aggarwal V, Jain A, Ha T, Chen J. Single-Molecule Analysis of Lipid-Protein Interactions in Crude Cell Lysates. Analytical Chemistry. PMID 27015152 DOI: 10.1021/acs.analchem.5b04127  1
2016 Yoo J, Kim H, Aksimentiev A, Ha T. Direct evidence for sequence-dependent attraction between double-stranded DNA controlled by methylation. Nature Communications. 7: 11045. PMID 27001929 DOI: 10.1038/ncomms11045  1
2016 Heo P, Yang Y, Han KY, Kong B, Shin JH, Jung Y, Jeong C, Shin J, Shin YK, Ha T, Kweon DH. A chemical controller of SNARE-driven membrane fusion that primes vesicles for Ca(2+)-triggered millisecond exocytosis. Journal of the American Chemical Society. PMID 26987363 DOI: 10.1021/jacs.5b13449  1
2016 Lee MK, Park J, Wang X, Roein-Peikar M, Ko E, Qin E, Lee J, Ha T, Kong H. Rupture force of cell adhesion ligand tethers modulates biological activities of a cell-laden hydrogel. Chemical Communications (Cambridge, England). PMID 26912186 DOI: 10.1039/c6cc00036c  1
2016 Ngo TT, Yoo J, Dai Q, Zhang Q, He C, Aksimentiev A, Ha T. Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability. Nature Communications. 7: 10813. PMID 26905257 DOI: 10.1038/ncomms10813  1
2016 Basu A, Ha T. The light side of the force. Elife. 5. PMID 26902718 DOI: 10.7554/eLife.14274  1
2016 Wang X, Rahil Z, Li IT, Chowdhury F, Leckband DE, Chemla YR, Ha T. Constructing modular and universal single molecule tension sensor using protein G to study mechano-sensitive receptors. Scientific Reports. 6: 21584. PMID 26875524 DOI: 10.1038/srep21584  1
2016 Zong X, Nakagawa S, Freier SM, Fei J, Ha T, Prasanth SG, Prasanth KV. Natural antisense RNA promotes 3' end processing and maturation of MALAT1 lncRNA. Nucleic Acids Research. PMID 26826711 DOI: 10.1093/nar/gkw047  0.72
2016 Brenner MD, Zhou R, Conway DE, Lanzano L, Gratton E, Schwartz MA, Ha T. Spider silk peptide is a compact, linear nano-spring ideal for intracellular tension sensing. Nano Letters. PMID 26824190 DOI: 10.1021/acs.nanolett.6b00305  1
2016 Roein-Peikar M, Xu Q, Wang X, Ha T. Ultrasensitivity of Cell Adhesion to the Presence of Mechanically Strong Ligands Physical Review X. 6. DOI: 10.1103/PhysRevX.6.011001  0.96
2016 Yoo J, Kim H, Ha T, Aksimentiev A. Effector-Free Molecular Mechanism of Epigenetic Regulation Revealed by Molecular Dynamics Simulations and Single-Molecule FRET Experiments Biophysical Journal. 110: 561a-562a. DOI: 10.1016/j.bpj.2015.11.3003  0.72
2016 Kayikcioglu T, Ha T. DNA Flexibility does not show Appreciable Temperature Dependence Biophysical Journal. 110: 403a. DOI: 10.1016/j.bpj.2015.11.2177  0.4
2015 Peterson JR, Cole JA, Fei J, Ha T, Luthey-Schulten ZA. Effects of DNA replication on mRNA noise. Proceedings of the National Academy of Sciences of the United States of America. PMID 26669443 DOI: 10.1073/pnas.1516246112  0.72
2015 Wang S, Vafabakhsh R, Borschel WF, Ha T, Nichols CG. Structural dynamics of potassium-channel gating revealed by single-molecule FRET. Nature Structural & Molecular Biology. PMID 26641713 DOI: 10.1038/nsmb.3138  1
2015 Wang X, Sun J, Xu Q, Chowdhury F, Roein-Peikar M, Wang Y, Ha T. Integrin Molecular Tension within Motile Focal Adhesions. Biophysical Journal. 109: 2259-2267. PMID 26636937 DOI: 10.1016/j.bpj.2015.10.029  1
2015 Zhang J, Fei J, Leslie BJ, Han KY, Kuhlman TE, Ha T. Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells. Scientific Reports. 5: 17295. PMID 26612428 DOI: 10.1038/srep17295  1
2015 Sharma A, Varshney M, Park J, Ha TK, Chae KH, Shin HJ. Bifunctional Ce1-xEuxO2 (0 ≤ x ≤ 0.3) nanoparticles for photoluminescence and photocatalyst applications: an X-ray absorption spectroscopy study. Physical Chemistry Chemical Physics : Pccp. PMID 26499907 DOI: 10.1039/c5cp05251c  0.44
2015 Lee HR, Mitra J, Lee S, Gao SJ, Oh TK, Kim M, Ha T, Jung JU. KSHV vIRF4 perturbs the G1-S cell cycle progression via deregulation of cyclin D1. Journal of Virology. PMID 26491150 DOI: 10.1128/JVI.01897-15  0.68
2015 Shashikanth N, Petrova YI, Park S, Chekan J, Maiden S, Spano M, Ha T, Gumbiner BM, Leckband DE. Allosteric Regulation of E-Cadherin Adhesion. The Journal of Biological Chemistry. PMID 26175155 DOI: 10.1074/jbc.M115.657098  1
2015 Chowdhury F, Li IT, Leslie BJ, Do?anay S, Singh R, Wang X, Seong J, Lee SH, Park S, Wang N, Ha T. Single molecular force across single integrins dictates cell spreading. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 26143887 DOI: 10.1039/c5ib00080g  1
2015 Khan A, Giri S, Wang Y, Chakraborty A, Ghosh AK, Anantharaman A, Aggarwal V, Sathyan KM, Ha T, Prasanth KV, Prasanth SG. BEND3 represses rDNA transcription by stabilizing a NoRC component via USP21 deubiquitinase. Proceedings of the National Academy of Sciences of the United States of America. 112: 8338-43. PMID 26100909 DOI: 10.1073/pnas.1424705112  1
2015 Jung CH, Lee DH, Ahn J, Lee H, Choi WH, Jang YJ, Ha TY. γ-Oryzanol Enhances Adipocyte Differentiation and Glucose Uptake. Nutrients. 7: 4851-61. PMID 26083118 DOI: 10.3390/nu7064851  0.84
2015 Kim HN, Ha TG, Kim MJ, Jun EJ, Jeong SH, Kim JB. Factors related to number of present teeth in Korean elderly adults aged 55-84 years. International Journal of Dental Hygiene. PMID 26074207 DOI: 10.1111/idh.12151  0.96
2015 Sewell D, Kim H, Ha T, Ma P. A parameter estimation method for fluorescence lifetime data. Bmc Research Notes. 8: 230. PMID 26054354 DOI: 10.1186/s13104-015-1176-y  1
2015 Gao M, Wang X, Zhang X, Ha T, Ma H, Liu L, Kalbfleisch JH, Gao X, Kao RL, Williams DL, Li C. Attenuation of Cardiac Dysfunction in Polymicrobial Sepsis by MicroRNA-146a Is Mediated via Targeting of IRAK1 and TRAF6 Expression. Journal of Immunology (Baltimore, Md. : 1950). 195: 672-82. PMID 26048146 DOI: 10.4049/jimmunol.1403155  0.48
2015 Han KY, Ha T. Dual-color three-dimensional STED microscopy with a single high-repetition-rate laser. Optics Letters. 40: 2653-6. PMID 26030581  0.76
2015 Kim HI, Han SU, Yang HK, Kim YW, Lee HJ, Ryu KW, Park JM, An JY, Kim MC, Park S, Song KY, Oh SJ, Kong SH, Suh BJ, Yang DH, ... Ha TK, et al. Multicenter Prospective Comparative Study of Robotic Versus Laparoscopic Gastrectomy for Gastric Adenocarcinoma. Annals of Surgery. PMID 26020107 DOI: 10.1097/SLA.0000000000001249  0.76
2015 Shin JI, Park HY, Park SJ, Ha TS. Role of vitamin d in improvement in changes of podocyte p-cadherin/beta-catenin complex induced by diabetic conditions. Iranian Journal of Kidney Diseases. 9: 194-201. PMID 25957423  0.84
2015 Hwang S, Lee YJ, Kim KH, Ahn CS, Moon DB, Ha TY, Song GW, Jung DH, Lee SG. The Impact of Tumor Size on Long-Term Survival Outcomes After Resection of Solitary Hepatocellular Carcinoma: Single-Institution Experience with 2558 Patients. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. 19: 1281-90. PMID 25956724 DOI: 10.1007/s11605-015-2849-5  0.84
2015 Ha TY, Hwang S, Song GW, Jung DH, Kim MH, Lee SG, Kwon DI, Ko GY. Cluster Hepaticojejunostomy Is a Useful Technique Enabling Secure Reconstruction of Severely Damaged Hilar Bile Ducts. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. PMID 25956723 DOI: 10.1007/s11605-015-2844-x  0.84
2015 Hwang S, Ha TY, Song GW, Jung DH, Ahn CS, Moon DB, Kim KH, Lee YJ, Lee SG. Quantified Risk Assessment for Major Hepatectomy via the Indocyanine Green Clearance Rate and Liver Volumetry Combined with Standard Liver Volume. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. 19: 1305-14. PMID 25947549 DOI: 10.1007/s11605-015-2846-8  0.84
2015 Giri S, Aggarwal V, Pontis J, Shen Z, Chakraborty A, Khan A, Mizzen C, Prasanth KV, Ait-Si-Ali S, Ha T, Prasanth SG. The preRC protein ORCA organizes heterochromatin by assembling histone H3 lysine 9 methyltransferases on chromatin. Elife. 4. PMID 25922909 DOI: 10.7554/eLife.06496  1
2015 Kim DW, Park HK, Ha TK, Kim SH, Jung SJ, Kim do H, Bae SK. Sonographically based diagnosis of contralateral malignancy in preoperative patients with papillary thyroid microcarcinoma. Journal of Ultrasound in Medicine : Official Journal of the American Institute of Ultrasound in Medicine. 34: 789-95. PMID 25911711 DOI: 10.7863/ultra.34.5.789  1
2015 Lee SG, Moon DB, Hwang S, Ahn CS, Kim KH, Song GW, Jung DH, Ha TY, Park GC, Jung BH. Liver transplantation in Korea: past, present, and future. Transplantation Proceedings. 47: 705-8. PMID 25891715 DOI: 10.1016/j.transproceed.2015.02.015  0.84
2015 Jung BH, Hwang S, Song GW, Jung DH, Ha TY, Park GC, Ahn CS, Moon DB, Kim KH, Kwang SH, Yoon YI, Shin MH, Kim WJ, Kang WH, Kim SH, et al. Updated status of deceased-donor liver graft allocation for high-urgency adult patients in a Korean high-volume liver transplantation center. Transplantation Proceedings. 47: 580-3. PMID 25891690 DOI: 10.1016/j.transproceed.2015.02.014  0.64
2015 Jung DH, Hwang S, Ahn CS, Kim KH, Moon DB, Ha TY, Song GW, Park GC, Lee SG. Safety and usefulness of warm dissection technique during liver graft retrieval from deceased donors. Transplantation Proceedings. 47: 576-9. PMID 25891689 DOI: 10.1016/j.transproceed.2014.12.043  0.64
2015 Comstock MJ, Whitley KD, Jia H, Sokoloski J, Lohman TM, Ha T, Chemla YR. Protein structure. Direct observation of structure-function relationship in a nucleic acid-processing enzyme. Science (New York, N.Y.). 348: 352-4. PMID 25883359 DOI: 10.1126/science.aaa0130  1
2015 Arslan S, Khafizov R, Thomas CD, Chemla YR, Ha T. Protein structure. Engineering of a superhelicase through conformational control. Science (New York, N.Y.). 348: 344-7. PMID 25883358 DOI: 10.1126/science.aaa0445  1
2015 Ha TY, Hwang S, Hong HN, Choi YI, Yoon SY, Won YJ, Song GW, Kim N, Tak E, Ryoo BY. Synergistic effect of sorafenib and vitamin K on suppression of hepatocellular carcinoma cell migration and metastasis. Anticancer Research. 35: 1985-95. PMID 25862851  0.84
2015 Ha TY, Hwang S, Moon KM, Won YJ, Song GW, Kim N, Tak E, Ryoo BY, Hong HN. Sorafenib inhibits migration and invasion of hepatocellular carcinoma cells through suppression of matrix metalloproteinase expression. Anticancer Research. 35: 1967-76. PMID 25862849  0.84
2015 Ha YJ, An JH, Shim JH, Yu ES, Kim JJ, Ha TY, Lee HC. A case of primary hepatic actinomycosis: an enigmatic inflammatory lesion of the liver. Clinical and Molecular Hepatology. 21: 80-4. PMID 25834805 DOI: 10.3350/cmh.2015.21.1.80  0.88
2015 Ngo TT, Ha T. Nucleosomes undergo slow spontaneous gaping. Nucleic Acids Research. 43: 3964-71. PMID 25824950 DOI: 10.1093/nar/gkv276  1
2015 Song JM, Kim JJ, Ha TY, Lee JW, Jung SH, Hwang IS, Lee I, Sun BJ, Kim DH, Kang DH, Song JK. Basal chordae sites on the mitral valve determine the severity of secondary mitral regurgitation. Heart (British Cardiac Society). 101: 1024-31. PMID 25800999 DOI: 10.1136/heartjnl-2014-306854  0.68
2015 Fei J, Singh D, Zhang Q, Park S, Balasubramanian D, Golding I, Vanderpool CK, Ha T. RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA. Science (New York, N.Y.). 347: 1371-4. PMID 25792329 DOI: 10.1126/science.1258849  1
2015 Ngo TT, Zhang Q, Zhou R, Yodh JG, Ha T. Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility. Cell. 160: 1135-44. PMID 25768909 DOI: 10.1016/j.cell.2015.02.001  1
2015 Ha TM, Yao B, Wang Q, Zhu J. 2-(methoxycarbonyl)ethyl as a removable N-protecting group: synthesis of indoloisoquinolinones by Pd(II)-catalyzed intramolecular diamination of alkynes. Organic Letters. 17: 1750-3. PMID 25768302 DOI: 10.1021/acs.orglett.5b00526  0.88
2015 Ha TY, Hwang S, Moon DB, Ahn CS, Kim KH, Song GW, Jung DH, Park GC, Kang SH, Jung BH, Lee SG. Conjoined unification venoplasty for graft double portal vein branches as a modification of autologous Y-graft interposition. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. 21: 707-10. PMID 25762169 DOI: 10.1002/lt.24101  0.84
2015 Lee SG, Moon SH, Kim HJ, Lee JY, Park SJ, Chung HM, Ha TY, Song GW, Jung DH, Park H, Kwon TW, Cho YP. Role of bone marrow-derived progenitor cells in de novo liver regeneration in human liver transplants. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 25761987 DOI: 10.1002/lt.24099  0.84
2015 Ha TK, Kim YG, Lee GM. Understanding of altered N-glycosylation-related gene expression in recombinant Chinese hamster ovary cells subjected to elevated ammonium concentration by digital mRNA counting. Biotechnology and Bioengineering. 112: 1583-93. PMID 25728222 DOI: 10.1002/bit.25568  0.92
2015 Lho Y, le Roux CW, Park HS, Kim GS, Jung J, Hwang GS, Seo YK, Ha TK, Ha E. Changes in Glucose Metabolism in Vertical Sleeve Gastrectomy. Obesity Surgery. PMID 25726321 DOI: 10.1007/s11695-015-1636-4  0.56
2015 Yang JS, Perveen S, Ha TJ, Kim SY, Yoon SH. Cyanidin-3-glucoside inhibits glutamate-induced Zn2+ signaling and neuronal cell death in cultured rat hippocampal neurons by inhibiting Ca2+-induced mitochondrial depolarization and formation of reactive oxygen species. Brain Research. 1606: 9-20. PMID 25721794 DOI: 10.1016/j.brainres.2015.02.028  0.52
2015 Ha TV, Kim S, Choi Y, Kwak HS, Lee SJ, Wen J, Oey I, Ko S. Antioxidant activity and bioaccessibility of size-different nanoemulsions for lycopene-enriched tomato extract. Food Chemistry. 178: 115-21. PMID 25704691 DOI: 10.1016/j.foodchem.2015.01.048  0.52
2015 Seo SH, Kang MS, Kim KH, An MS, Ha TK, Bae KB, Oh MK, Choi CS, Oh SH, Choi YK. Correlation of 15-prostagladin dehydrogenase expression with clinicopathological factors and survival rate in gastric adenocarcinoma. International Journal of Surgery (London, England). 13: 96-101. PMID 25704623 DOI: 10.1016/j.ijsu.2014.10.009  0.44
2015 Li T, Kim BB, Ha TH, Shin YB, Kim MG. The effects of pH and surfactants on the absorption and fluorescence properties of ochratoxin A and zearalenone. Luminescence : the Journal of Biological and Chemical Luminescence. PMID 25689979 DOI: 10.1002/bio.2866  0.72
2015 Park SJ, Saleem MA, Nam JA, Ha TS, Shin JI. Effects of interleukin-13 and montelukast on the expression of zonula occludens-1 in human podocytes. Yonsei Medical Journal. 56: 426-32. PMID 25683991 DOI: 10.3349/ymj.2015.56.2.426  0.84
2015 Kim HC, Kim E, Ha TL, Jeong SW, Lee SG, Lee SJ, Lee B. Thiol-responsive gemini poly(ethylene glycol)-poly(lactide) with a cystine disulfide spacer as an intracellular drug delivery nanocarrier. Colloids and Surfaces. B, Biointerfaces. 127: 206-12. PMID 25679493 DOI: 10.1016/j.colsurfb.2015.01.039  0.76
2015 Kim TJ, Joo C, Seong J, Vafabakhsh R, Botvinick EL, Berns MW, Palmer AE, Wang N, Ha T, Jakobsson E, Sun J, Wang Y. Distinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs. Elife. 4: e04876. PMID 25667984 DOI: 10.7554/eLife.04876  1
2015 Ryu H, Seo S, Lee JY, Ha TH, Lee S, Jung A, Ann J, Kim SE, Yoon S, Hong M, Blumberg PM, Frank-Foltyn R, Bahrenberg G, Schiene K, Stockhausen H, et al. Pyridine C-region analogs of 2-(3-fluoro-4-methylsulfonylaminophenyl)propanamides as potent TRPV1 antagonists. European Journal of Medicinal Chemistry. 93: 101-8. PMID 25659771 DOI: 10.1016/j.ejmech.2015.02.001  0.4
2015 Kang YJ, Satyawan D, Shim S, Lee T, Lee J, Hwang WJ, Kim SK, Lestari P, Laosatit K, Kim KH, Ha TJ, Chitikineni A, Kim MY, Ko JM, Gwag JG, et al. Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports. 5: 8069. PMID 25626881 DOI: 10.1038/srep08069  0.8
2015 Kim SH, Park J, Joo C, Kim D, Ha T. Dynamic growth and shrinkage govern the pH dependence of RecA filament stability. Plos One. 10: e0115611. PMID 25608006 DOI: 10.1371/journal.pone.0115611  1
2015 Yang JL, Ha TK, Dhodary B, Pyo E, Nguyen NH, Cho H, Kim E, Oh WK. Oleanane triterpenes from the flowers of Camellia japonica inhibit porcine epidemic diarrhea virus (PEDV) replication. Journal of Medicinal Chemistry. 58: 1268-80. PMID 25568928 DOI: 10.1021/jm501567f  0.56
2015 Park SJ, Pai KS, Kim JM, Park K, Kim KS, Song SH, Park S, Kim SO, Ryu DS, Baek M, Lee SD, Lee JW, Im YJ, Han SW, Chung JM, ... ... Ha TS, et al. Erratum: efficacy and tolerability of anticholinergics in korean children with overactive bladder: a multicenter retrospective study. Journal of Korean Medical Science. 30: 119. PMID 25547325 DOI: 10.3346/jkms.2015.30.1.119  0.92
2015 Kim JS, Ha TH, Chang JS, Park YS, Huh I, Kim J, Hong KS, Park T, Ha K. Seasonality and its distinct clinical correlates in bipolar II disorder. Psychiatry Research. 225: 540-4. PMID 25537487 DOI: 10.1016/j.psychres.2014.11.051  0.8
2015 Park JY, Kim DW, Park HK, Ha TK, Jung SJ, Kim do H, Bae SK. Comparison of T stage, N stage, multifocality, and bilaterality in papillary thyroid carcinoma patients according to the presence of coexisting lymphocytic thyroiditis. Endocrine Research. 40: 151-5. PMID 25531396 DOI: 10.3109/07435800.2014.977911  0.96
2015 Song J, Zhu Y, Li J, Liu J, Gao Y, Ha T, Que L, Liu L, Zhu G, Chen Q, Xu Y, Li C, Li Y. Pellino1-mediated TGF-β1 synthesis contributes to mechanical stress induced cardiac fibroblast activation. Journal of Molecular and Cellular Cardiology. 79: 145-56. PMID 25446187 DOI: 10.1016/j.yjmcc.2014.11.006  0.68
2015 Ha TJ, Chen K, Chuang S, Yu KM, Kiriya D, Javey A. Highly uniform and stable n-type carbon nanotube transistors by using positively charged silicon nitride thin films. Nano Letters. 15: 392-7. PMID 25437145 DOI: 10.1021/nl5037098  0.36
2015 Ha TY, Yoon YI, Hwang S, Park YJ, Kang SH, Jung BH, Kim WJ, Sin MH, Ahn CS, Moon DB, Song GW, Jung DH, Lee YJ, Park KM, Kim KH, et al. Effect of reoperation on long-term outcome of pT1b/T2 gallbladder carcinoma after initial laparoscopic cholecystectomy. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. 19: 298-305. PMID 25373705 DOI: 10.1007/s11605-014-2692-0  0.84
2015 Zhang X, Ha T, Lu C, Lam F, Liu L, Schweitzer J, Kalbfleisch J, Kao RL, Williams DL, Li C. Poly (I:C) therapy decreases cerebral ischaemia/reperfusion injury via TLR3-mediated prevention of Fas/FADD interaction. Journal of Cellular and Molecular Medicine. 19: 555-65. PMID 25351293 DOI: 10.1111/jcmm.12456  0.68
2015 Park HK, Kim DW, Lee YJ, Ha TK, Kim do H, Bae SK, Jung SJ. Suspicious sonographic and cytological findings in patients with subacute thyroiditis: Two case reports. Diagnostic Cytopathology. 43: 399-402. PMID 25350937 DOI: 10.1002/dc.23230  0.96
2015 Tripathi V, Fei J, Ha T, Prasanth KV. RNA fluorescence in situ hybridization in cultured mammalian cells. Methods in Molecular Biology (Clifton, N.J.). 1206: 123-36. PMID 25240892 DOI: 10.1007/978-1-4939-1369-5_11  1
2014 Cho YS, Kim CH, Kim HN, Ha TS, Ahn HY. Ginsenoside Rg3 inhibits lipopolysaccharide-induced adhesion molecule expression in human umbilical vein endothelial cell and C57BL/6 mice. Die Pharmazie. 69: 818-22. PMID 25985577  0.96
2014 Kim JS, Ha TY, Ahn J, Kim S. Analysis and distribution of esculetin in plasma and tissues of rats after oral administration. Preventive Nutrition and Food Science. 19: 321-6. PMID 25580397 DOI: 10.3746/pnf.2014.19.4.321  0.8
2014 Ha TY, Hwang S, Ahn CS, Kim KH, Lee YJ, Moon DB, Song GW, Jung DH, Park GC, Lee SG. Resection of metachronous adrenal metastasis after liver resection and transplantation for hepatocellular carcinoma. Digestive Surgery. 31: 428-35. PMID 25573138 DOI: 10.1159/000370078  0.84
2014 Kong TH, Ha TH, Eom MS, Park SY. Eccrine poroma of the auricle: a case report. Korean Journal of Audiology. 18: 151-2. PMID 25558412 DOI: 10.7874/kja.2014.18.3.151  0.68
2014 Yoo DG, Jung BH, Hwang S, Kim SC, Kim KH, Lee YJ, Ahn CS, Moon DB, Kim KM, Ha TY, Kang SH, Kim N. Prevalence analysis of de novo hepatic steatosis following pylorus-preserving pancreaticoduodenectomy. Digestive Surgery. 31: 359-65. PMID 25503526 DOI: 10.1159/000368381  0.84
2014 Song GW, Ahn CS, Lee SG, Hwang S, Kim KH, Moon DB, Ha TY, Jung DH, Park GC, Kang SH, Jung BH, Kim N. Correlation between risk of hepatitis B virus recurrence and tissue expression of covalently closed circular DNA in living donor liver transplant recipients treated with high-dose hepatitis B immunoglobulin. Transplantation Proceedings. 46: 3548-53. PMID 25498087 DOI: 10.1016/j.transproceed.2014.06.074  0.56
2014 Jain A, Arauz E, Aggarwal V, Ikon N, Chen J, Ha T. Stoichiometry and assembly of mTOR complexes revealed by single-molecule pulldown. Proceedings of the National Academy of Sciences of the United States of America. 111: 17833-8. PMID 25453101 DOI: 10.1073/pnas.1419425111  1
2014 Kondabagil K, Dai L, Vafabakhsh R, Ha T, Draper B, Rao VB. Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function. Virology. 468: 660-8. PMID 25443668 DOI: 10.1016/j.virol.2014.08.033  1
2014 Kim JY, Ha TK, le Roux CW. Metabolic effects of gastrectomy with or without omentectomy in gastric cancer. Hepato-Gastroenterology. 61: 1830-4. PMID 25436387  0.56
2014 Kim S, Kim DH, Kim YS, Ha TY, Yang J, Park SH, Jeong KW, Rhee JK. HD047703, a New Promising Anti-Diabetic Drug Candidate: In Vivo Preclinical Studies. Biomolecules & Therapeutics. 22: 400-5. PMID 25414769 DOI: 10.4062/biomolther.2014.035  0.68
2014 Thibodeaux CJ, Ha T, van der Donk WA. A price to pay for relaxed substrate specificity: a comparative kinetic analysis of the class II lanthipeptide synthetases ProcM and HalM2. Journal of the American Chemical Society. 136: 17513-29. PMID 25409537 DOI: 10.1021/ja5089452  1
2014 Park SJ, Pai KS, Kim JM, Park K, Kim KS, Song SH, Park S, Kim SO, Ryu DS, Baek M, Lee SD, Lee JW, Im YJ, Han SW, Chung JM, ... ... Ha TS, et al. Efficacy and tolerability of anticholinergics in Korean children with overactive bladder: a multicenter retrospective study. Journal of Korean Medical Science. 29: 1550-4. PMID 25408588 DOI: 10.3346/jkms.2014.29.11.1550  0.92
2014 Caohuy H, Yang Q, Eudy Y, Ha TA, Xu AE, Glover M, Frizzell RA, Jozwik C, Pollard HB. Activation of 3-phosphoinositide-dependent kinase 1 (PDK1) and serum- and glucocorticoid-induced protein kinase 1 (SGK1) by short-chain sphingolipid C4-ceramide rescues the trafficking defect of ΔF508-cystic fibrosis transmembrane conductance regulator (ΔF508-CFTR). The Journal of Biological Chemistry. 289: 35953-68. PMID 25384981 DOI: 10.1074/jbc.M114.598649  0.36
2014 Ha TS, Choi JY, Park HY, Nam JA, Seong SB. Ginseng total saponin modulates the changes of α-actinin-4 in podocytes induced by diabetic conditions. Journal of Ginseng Research. 38: 233-8. PMID 25379001 DOI: 10.1016/j.jgr.2014.05.004  0.84
2014 Kim MG, Lee JH, Ha TK, Kwon SJ. The distance of proximal resection margin dose not significantly influence on the prognosis of gastric cancer patients after curative resection. Annals of Surgical Treatment and Research. 87: 223-31. PMID 25368847 DOI: 10.4174/astr.2014.87.5.223  0.88
2014 Um MY, Park JH, Gwon SY, Ahn J, Jung CH, Ha TY. Agaricus bisporus attenuates dextran sulfate sodium-induced colitis. Journal of Medicinal Food. 17: 1383-5. PMID 25357009 DOI: 10.1089/jmf.2014.3191  0.84
2014 Lee MG, Han J, Jeong SI, Her NG, Lee JH, Ha TK, Kang MJ, Ryu BK, Chi SG. XAF1 directs apoptotic switch of p53 signaling through activation of HIPK2 and ZNF313. Proceedings of the National Academy of Sciences of the United States of America. 111: 15532-7. PMID 25313037 DOI: 10.1073/pnas.1411746111  0.88
2014 Hua B, Han KY, Zhou R, Kim H, Shi X, Abeysirigunawardena SC, Jain A, Singh D, Aggarwal V, Woodson SA, Ha T. An improved surface passivation method for single-molecule studies. Nature Methods. 11: 1233-6. PMID 25306544 DOI: 10.1038/nmeth.3143  1
2014 Choi WH, Um MY, Ahn J, Jung CH, Park MK, Ha TY. Ethanolic extract of Taheebo attenuates increase in body weight and fatty liver in mice fed a high-fat diet. Molecules (Basel, Switzerland). 19: 16013-23. PMID 25299819 DOI: 10.3390/molecules191016013  0.84
2014 Vafabakhsh R, Kondabagil K, Earnest T, Lee KS, Zhang Z, Dai L, Dahmen KA, Rao VB, Ha T. Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4. Proceedings of the National Academy of Sciences of the United States of America. 111: 15096-101. PMID 25288726 DOI: 10.1073/pnas.1407235111  1
2014 Um MY, Hwang KH, Choi WH, Ahn J, Jung CH, Ha TY. Curcumin attenuates adhesion molecules and matrix metalloproteinase expression in hypercholesterolemic rabbits. Nutrition Research (New York, N.Y.). 34: 886-93. PMID 25282128 DOI: 10.1016/j.nutres.2014.09.001  0.84
2014 Li L, Osdal T, Ho Y, Chun S, McDonald T, Agarwal P, Lin A, Chu S, Qi J, Li L, Hsieh YT, Dos Santos C, Yuan H, Ha TQ, Popa M, et al. SIRT1 activation by a c-MYC oncogenic network promotes the maintenance and drug resistance of human FLT3-ITD acute myeloid leukemia stem cells. Cell Stem Cell. 15: 431-46. PMID 25280219 DOI: 10.1016/j.stem.2014.08.001  0.6
2014 Lee YJ, Kim DW, Park HK, Ha TK, Kim DH, Jung SJ, Bae SK. Benign intranodal thyroid tissue mimicking nodal metastasis in a patient with papillary thyroid carcinoma: A case report. Head & Neck. PMID 25270676 DOI: 10.1002/hed.23886  0.96
2014 Ota H, Chen K, Lin Y, Kiriya D, Shiraki H, Yu Z, Ha TJ, Javey A. Highly deformable liquid-state heterojunction sensors. Nature Communications. 5: 5032. PMID 25262698 DOI: 10.1038/ncomms6032  0.36
2014 Müller S, Laxmi-Reddy K, Jena PV, Baptiste B, Dong Z, Godde F, Ha T, Rodriguez R, Balasubramanian S, Huc I. Targeting DNA G-quadruplexes with helical small molecules. Chembiochem : a European Journal of Chemical Biology. 15: 2563-70. PMID 25256604 DOI: 10.1002/cbic.201402439  1
2014 Kim SH, Ragunathan K, Park J, Joo C, Kim D, Ha T. Cooperative conformational transitions keep RecA filament active during ATPase cycle. Journal of the American Chemical Society. 136: 14796-800. PMID 25252114 DOI: 10.1021/ja506363y  1
2014 Dugasani SR, Ha T, Gnapareddy B, Choi K, Lee J, Kim B, Kim JH, Park SH. Energy band gap and optical transition of metal ion modified double crossover DNA lattices. Acs Applied Materials & Interfaces. 6: 17599-605. PMID 25247447 DOI: 10.1021/am503614x  0.76
2014 Choi SH, Lee BH, Kim HJ, Jung SW, Kim HS, Shin HC, Lee JH, Kim HC, Rhim H, Hwang SH, Ha TS, Kim HJ, Cho H, Nah SY. Ginseng gintonin activates the human cardiac delayed rectifier K+ channel: involvement of Ca2+/calmodulin binding sites. Molecules and Cells. 37: 656-63. PMID 25234465 DOI: 10.14348/molcells.2014.0087  0.6
2014 Ha T, Yoo J, Han S, Cho YS. Numerical study on tsunami hazard mitigation using a submerged breakwater. Thescientificworldjournal. 2014: 863202. PMID 25215334 DOI: 10.1155/2014/863202  0.72
2014 Aggarwal V, Ha T. Single-molecule pull-down (SiMPull) for new-age biochemistry: methodology and biochemical applications of single-molecule pull-down (SiMPull) for probing biomolecular interactions in crude cell extracts. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 1109-19. PMID 25168682 DOI: 10.1002/bies.201400090  1
2014 Maffeo C, Ngo TT, Ha T, Aksimentiev A. A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment. Journal of Chemical Theory and Computation. 10: 2891-2896. PMID 25136266 DOI: 10.1021/ct500193u  1
2014 Tan Y, Tajik A, Chen J, Jia Q, Chowdhury F, Wang L, Chen J, Zhang S, Hong Y, Yi H, Wu DC, Zhang Y, Wei F, Poh YC, Seong J, ... ... Ha T, et al. Matrix softness regulates plasticity of tumour-repopulating cells via H3K9 demethylation and Sox2 expression. Nature Communications. 5: 4619. PMID 25099074 DOI: 10.1038/ncomms5619  1
2014 Chemla YR, Ha T. Biophysics. Ultraslow relaxation of confined DNA. Science (New York, N.Y.). 345: 380-1. PMID 25061189 DOI: 10.1126/science.1256359  1
2014 Yang JL, Ha TK, Dhodary B, Kim KH, Park J, Lee CH, Kim YC, Oh WK. Dammarane triterpenes as potential SIRT1 activators from the leaves of Panax ginseng. Journal of Natural Products. 77: 1615-23. PMID 24968750 DOI: 10.1021/np5002303  1
2014 Chen CL, Cheng YF, Yu CY, Ou HY, Tsang LL, Huang TL, Chen TY, Concejero A, Wang CC, Wang SH, Lin TS, Liu YW, Yang CH, Yong CC, Chiu KW, ... ... Ha TY, et al. Living donor liver transplantation: the Asian perspective. Transplantation. 97: S3. PMID 24849827 DOI: 10.1097/TP.0000000000000060  0.56
2014 Zhou R, Zhang J, Bochman ML, Zakian VA, Ha T. Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA. Elife. 3: e02190. PMID 24843019 DOI: 10.7554/eLife.02190.001  1
2014 Moon E, Chang JS, Choi S, Ha TH, Cha B, Cho HS, Park JM, Lee BD, Lee YM, Choi Y, Ha K. Characteristics of stress-coping behaviors in patients with bipolar disorders. Psychiatry Research. 218: 69-74. PMID 24803186 DOI: 10.1016/j.psychres.2014.03.047  0.6
2014 Lee KS, Marciel AB, Kozlov AG, Schroeder CM, Lohman TM, Ha T. Ultrafast redistribution of E. coli SSB along long single-stranded DNA via intersegment transfer. Journal of Molecular Biology. 426: 2413-21. PMID 24792418 DOI: 10.1016/j.jmb.2014.04.023  1
2014 Peterson JR, Labhsetwar P, Ellermeier JR, Kohler PR, Jain A, Ha T, Metcalf WW, Luthey-Schulten Z. Towards a computational model of a methane producing archaeum. Archaea (Vancouver, B.C.). 2014: 898453. PMID 24729742 DOI: 10.1155/2014/898453  1
2014 Tang GQ, Nandakumar D, Bandwar RP, Lee KS, Roy R, Ha T, Patel SS. Relaxed rotational and scrunching changes in P266L mutant of T7 RNA polymerase reduce short abortive RNAs while delaying transition into elongation. Plos One. 9: e91859. PMID 24651161 DOI: 10.1371/journal.pone.0091859  1
2014 Syed S, Pandey M, Patel SS, Ha T. Single-molecule fluorescence reveals the unwinding stepping mechanism of replicative helicase. Cell Reports. 6: 1037-45. PMID 24630993 DOI: 10.1016/j.celrep.2014.02.022  1
2014 Kim TK, Lee JS, Jung HS, Ha TK, Kim SM, Han N, Lee EJ, Kim TN, Kwon MJ, Lee SH, Kim MK, Rhee BD, Park JH. Triiodothyronine induces proliferation of pancreatic β-cells through the MAPK/ERK pathway. Experimental and Clinical Endocrinology & Diabetes : Official Journal, German Society of Endocrinology [and] German Diabetes Association. 122: 240-5. PMID 24623499 DOI: 10.1055/s-0034-1367060  0.84
2014 Lee SJ, Syed S, Enemark EJ, Schuck S, Stenlund A, Ha T, Joshua-Tor L. Dynamic look at DNA unwinding by a replicative helicase. Proceedings of the National Academy of Sciences of the United States of America. 111: E827-35. PMID 24550505 DOI: 10.1073/pnas.1322254111  1
2014 Liang Q, Seo GJ, Choi YJ, Kwak MJ, Ge J, Rodgers MA, Shi M, Leslie BJ, Hopfner KP, Ha T, Oh BH, Jung JU. Crosstalk between the cGAS DNA sensor and Beclin-1 autophagy protein shapes innate antimicrobial immune responses. Cell Host & Microbe. 15: 228-38. PMID 24528868 DOI: 10.1016/j.chom.2014.01.009  1
2014 Kim H, Abeysirigunawarden SC, Chen K, Mayerle M, Ragunathan K, Luthey-Schulten Z, Ha T, Woodson SA. Protein-guided RNA dynamics during early ribosome assembly. Nature. 506: 334-8. PMID 24522531 DOI: 10.1038/nature13039  1
2014 Park SJ, Park JM, Pai KS, Ha TS, Lee SD, Baek M. Desmopressin alone versus desmopressin and an anticholinergic in the first-line treatment of primary monosymptomatic nocturnal enuresis: a multicenter study. Pediatric Nephrology (Berlin, Germany). 29: 1195-200. PMID 24477979 DOI: 10.1007/s00467-014-2751-5  0.84
2014 Bhattacharyya B, George NP, Thurmes TM, Zhou R, Jani N, Wessel SR, Sandler SJ, Ha T, Keck JL. Structural mechanisms of PriA-mediated DNA replication restart. Proceedings of the National Academy of Sciences of the United States of America. 111: 1373-8. PMID 24379377 DOI: 10.1073/pnas.1318001111  1
2014 Zhang J, Zhou R, Inoue J, Mikawa T, Ha T. Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA. Nucleic Acids Research. 42: 3821-32. PMID 24371279 DOI: 10.1093/nar/gkt1316  0.76
2014 Lee HR, DoÄŸanay S, Chung B, Toth Z, Brulois K, Lee S, Kanketayeva Z, Feng P, Ha T, Jung JU. Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor 4 (vIRF4) targets expression of cellular IRF4 and the Myc gene to facilitate lytic replication. Journal of Virology. 88: 2183-94. PMID 24335298 DOI: 10.1128/JVI.02106-13  0.68
2014 Kim H, Yoo J, Aksimentiev A, Ha T. ‘At’ Content as a Determinant of the Chromosome Structure Biophysical Journal. 106: 694a. DOI: 10.1016/j.bpj.2013.11.3840  0.72
2013 Lee JH, Park JH, Ha TS, Han HS. Refractory rickets caused by mild distal renal tubular acidosis. Annals of Pediatric Endocrinology & Metabolism. 18: 152-5. PMID 24904870 DOI: 10.6065/apem.2013.18.3.152  0.88
2013 Ha TH, Jeon TJ, Park JY, Jang YH, Kim DH, Ryu MJ, Sinn DH, Oh TH. [A case of basaloid squamous cell carcinoma of rectosigmoid colon]. The Korean Journal of Gastroenterology = Taehan Sohwagi Hakhoe Chi. 62: 375-8. PMID 24365738 DOI: 10.4166/kjg.2013.62.6.375  0.96
2013 Park JY, Jeon TJ, Ha TH, Hwang JT, Sinn DH, Oh TH, Shin WC, Choi WC. Bedside index for severity in acute pancreatitis: comparison with other scoring systems in predicting severity and organ failure. Hepatobiliary & Pancreatic Diseases International : Hbpd Int. 12: 645-50. PMID 24322751 DOI: 10.1016/S1499-3872(13)60101-0  0.6
2013 Han KY, Leslie BJ, Fei J, Zhang J, Ha T. Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging. Journal of the American Chemical Society. 135: 19033-8. PMID 24286188 DOI: 10.1021/ja411060p  1
2013 Ha TH, Jeon TJ, Park JY. Differentiation of mucinous cystic neoplasm and cystic changes associated with pancreatic adenocarcinoma. Bmj Case Reports. 2013. PMID 24194164 DOI: 10.1136/bcr-2013-201208  0.88
2013 Ro SH, Jung CH, Hahn WS, Xu X, Kim YM, Yun YS, Park JM, Kim KH, Seo M, Ha TY, Arriaga EA, Bernlohr DA, Kim DH. Distinct functions of Ulk1 and Ulk2 in the regulation of lipid metabolism in adipocytes. Autophagy. 9: 2103-14. PMID 24135897 DOI: 10.4161/auto.26563  0.84
2013 Fei J, Ha T. Watching DNA breath one molecule at a time. Proceedings of the National Academy of Sciences of the United States of America. 110: 17173-4. PMID 24096577 DOI: 10.1073/pnas.1316493110  1
2013 Yang SK, Shi X, Park S, Ha T, Zimmerman SC. A dendritic single-molecule fluorescent probe that is monovalent, photostable and minimally blinking. Nature Chemistry. 5: 692-7. PMID 23881501 DOI: 10.1038/nchem.1706  1
2013 Patel JR, Jain A, Chou YY, Baum A, Ha T, García-Sastre A. ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon. Embo Reports. 14: 780-7. PMID 23846310 DOI: 10.1038/embor.2013.102  1
2013 Jeon TI, Park JW, Ahn J, Jung CH, Ha TY. Fisetin protects against hepatosteatosis in mice by inhibiting miR-378. Molecular Nutrition & Food Research. 57: 1931-7. PMID 23818290 DOI: 10.1002/mnfr.201300071  0.84
2013 Kim SH, Joo C, Ha T, Kim D. Molecular mechanism of sequence-dependent stability of RecA filament. Nucleic Acids Research. 41: 7738-44. PMID 23804763 DOI: 10.1093/nar/gkt570  1
2013 Wang X, Ha T. Defining single molecular forces required to activate integrin and notch signaling. Science (New York, N.Y.). 340: 991-4. PMID 23704575 DOI: 10.1126/science.1231041  0.96
2013 Lee KS, Balci H, Jia H, Lohman TM, Ha T. Direct imaging of single UvrD helicase dynamics on long single-stranded DNA. Nature Communications. 4: 1878. PMID 23695672 DOI: 10.1038/ncomms2882  1
2013 Wessel SR, Marceau AH, Massoni SC, Zhou R, Ha T, Sandler SJ, Keck JL. PriC-mediated DNA replication restart requires PriC complex formation with the single-stranded DNA-binding protein. The Journal of Biological Chemistry. 288: 17569-78. PMID 23629733 DOI: 10.1074/jbc.M113.478156  1
2013 Lamboy JA, Kim H, Dembinski H, Ha T, Komives EA. Single-molecule FRET reveals the native-state dynamics of the IκBα ankyrin repeat domain. Journal of Molecular Biology. 425: 2578-90. PMID 23619335 DOI: 10.1016/j.jmb.2013.04.015  1
2013 Lee JS, Ha TK, Park JH, Lee GM. Anti-cell death engineering of CHO cells: co-overexpression of Bcl-2 for apoptosis inhibition, Beclin-1 for autophagy induction. Biotechnology and Bioengineering. 110: 2195-207. PMID 23436561 DOI: 10.1002/bit.24879  0.92
2013 Lue NF, Zhou R, Chico L, Mao N, Steinberg-Neifach O, Ha T. The telomere capping complex CST has an unusual stoichiometry, makes multipartite interaction with G-Tails, and unfolds higher-order G-tail structures. Plos Genetics. 9: e1003145. PMID 23300477 DOI: 10.1371/journal.pgen.1003145  1
2013 Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proceedings of the National Academy of Sciences of the United States of America. 110: 1333-8. PMID 23300284 DOI: 10.1073/pnas.1218818110  1
2013 Bae SJ, Ha YM, Kim JA, Park JY, Ha TK, Park D, Chun P, Park NH, Moon HR, Chung HY. A novel synthesized tyrosinase inhibitor: (E)-2-((2,4-dihydroxyphenyl)diazenyl)phenyl 4-methylbenzenesulfonate as an azo-resveratrol analog. Bioscience, Biotechnology, and Biochemistry. 77: 65-72. PMID 23291747 DOI: 10.1271/bbb.120547  0.84
2013 Ermolenko DN, Cornish PV, Ha T, Noller HF. Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. Rna (New York, N.Y.). 19: 158-66. PMID 23249745 DOI: 10.1261/rna.035964.112  1
2013 Kim H, Ha T. Single-molecule nanometry for biological physics. Reports On Progress in Physics. Physical Society (Great Britain). 76: 016601. PMID 23249673 DOI: 10.1088/0034-4885/76/1/016601  0.6
2013 Yang SH, Zhou R, Campbell J, Chen J, Ha T, Paull TT. The SOSS1 single-stranded DNA binding complex promotes DNA end resection in concert with Exo1. The Embo Journal. 32: 126-39. PMID 23178594 DOI: 10.1038/emboj.2012.314  1
2013 Park S, Doganay S, Chen ZJ, Ha T. Super-Resolution Localization of MAVS and RIG-I in MEF Biophysical Journal. 104: 337a. DOI: 10.1016/j.bpj.2012.11.1873  0.76
2013 Doganay S, Youzong Lee M, Baum A, Hwang S, Yoo J, Myong S, Garcia Sastre A, Ha T. IFN-Independent Expression of RIG-I is a Determinant of Heterogeneous IFN-B Expression States in Antiviral Signaling Biophysical Journal. 104: 328a. DOI: 10.1016/j.bpj.2012.11.1822  1
2013 Ngo TT, Zhou R, Yodh J, Ha T. Asymmetric Unwrapping of Nucleosome Revealed by Single Molecule Fluorescence-Force Spectroscopy Biophysical Journal. 104: 210a. DOI: 10.1016/j.bpj.2012.11.1189  0.76
2012 Kim TH, Kunz HH, Bhattacharjee S, Hauser F, Park J, Engineer C, Liu A, Ha T, Parker JE, Gassmann W, Schroeder JI. Natural variation in small molecule-induced TIR-NB-LRR signaling induces root growth arrest via EDS1- and PAD4-complexed R protein VICTR in Arabidopsis. The Plant Cell. 24: 5177-92. PMID 23275581 DOI: 10.1105/tpc.112.107235  1
2012 Ragunathan K, Liu C, Ha T. RecA filament sliding on DNA facilitates homology search. Elife. 1: e00067. PMID 23240082 DOI: 10.7554/eLife.00067  0.96
2012 Shen K, Arslan S, Akopian D, Ha T, Shan SO. Activated GTPase movement on an RNA scaffold drives co-translational protein targeting. Nature. 492: 271-5. PMID 23235881 DOI: 10.1038/nature11726  1
2012 Joo C, Ha T. Single-molecule FRET with total internal reflection microscopy. Cold Spring Harbor Protocols. 2012. PMID 23209135 DOI: 10.1101/pdb.top072058  1
2012 Joo C, Ha T. Prism-type total internal reflection microscopy for single-molecule FRET. Cold Spring Harbor Protocols. 2012. PMID 23209134 DOI: 10.1101/pdb.prot072041  1
2012 Bae SJ, Ha YM, Park YJ, Park JY, Song YM, Ha TK, Chun P, Moon HR, Chung HY. Design, synthesis, and evaluation of (E)-N-substituted benzylidene-aniline derivatives as tyrosinase inhibitors. European Journal of Medicinal Chemistry. 57: 383-90. PMID 23149255 DOI: 10.1016/j.ejmech.2012.09.026  0.84
2012 Joo C, Ha T. Objective-type total internal reflection microscopy (emission) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1192-4. PMID 23118359 DOI: 10.1101/pdb.prot072033  1
2012 Joo C, Ha T. Objective-type total internal reflection microscopy (excitation) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1189-91. PMID 23118358 DOI: 10.1101/pdb.prot072025  1
2012 Schlierf M, Ha T. A helicase with an extra spring in its step. Cell. 151: 244-6. PMID 23063116 DOI: 10.1016/j.cell.2012.09.031  0.76
2012 Joo C, Ha T. Imaging and identifying impurities in single-molecule FRET studies. Cold Spring Harbor Protocols. 2012: 1109-12. PMID 23028079 DOI: 10.1101/pdb.prot071548  1
2012 Joo C, Ha T. Preparing sample chambers for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1104-8. PMID 23028078 DOI: 10.1101/pdb.prot071530  1
2012 Zhou R, Ha T. Single-molecule analysis of SSB dynamics on single-stranded DNA. Methods in Molecular Biology (Clifton, N.J.). 922: 85-100. PMID 22976178 DOI: 10.1007/978-1-62703-032-8_5  0.76
2012 Joo C, Ha T. Labeling proteins for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1009-12. PMID 22949718 DOI: 10.1101/pdb.prot071035  1
2012 Joo C, Ha T. Labeling DNA (or RNA) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1005-8. PMID 22949717 DOI: 10.1101/pdb.prot071027  1
2012 Vafabakhsh R, Ha T. Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization. Science (New York, N.Y.). 337: 1097-101. PMID 22936778 DOI: 10.1126/science.1224139  1
2012 Panter MS, Jain A, Leonhardt RM, Ha T, Cresswell P. Dynamics of major histocompatibility complex class I association with the human peptide-loading complex Journal of Biological Chemistry. 287: 31172-31184. PMID 22829594 DOI: 10.1074/jbc.M112.387704  1
2012 Lee G, Bratkowski MA, Ding F, Ke A, Ha T. Elastic coupling between RNA degradation and unwinding by an exoribonuclease. Science (New York, N.Y.). 336: 1726-9. PMID 22745434 DOI: 10.1126/science.1216848  1
2012 Lee G, Ha T. Single-molecule imaging: a collagenase pauses before embarking on a killing spree. Current Biology : Cb. 22: R499-501. PMID 22720688 DOI: 10.1016/j.cub.2012.04.037  1
2012 Shen Z, Chakraborty A, Jain A, Giri S, Ha T, Prasanth KV, Prasanth SG. Dynamic association of ORCA with prereplicative complex components regulates DNA replication initiation. Molecular and Cellular Biology. 32: 3107-20. PMID 22645314 DOI: 10.1128/MCB.00362-12  1
2012 Diao J, Ishitsuka Y, Lee H, Joo C, Su Z, Syed S, Shin YK, Yoon TY, Ha T. A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins. Nature Protocols. 7: 921-34. PMID 22582418 DOI: 10.1038/nprot.2012.020  1
2012 Cisse II, Kim H, Ha T. A rule of seven in Watson-Crick base-pairing of mismatched sequences. Nature Structural & Molecular Biology. 19: 623-7. PMID 22580558 DOI: 10.1038/nsmb.2294  0.6
2012 Chou YY, Vafabakhsh R, Doğanay S, Gao Q, Ha T, Palese P. One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 9101-6. PMID 22547828 DOI: 10.1073/pnas.1206069109  1
2012 Gao Q, Chou YY, Doğanay S, Vafabakhsh R, Ha T, Palese P. The influenza A virus PB2, PA, NP, and M segments play a pivotal role during genome packaging. Journal of Virology. 86: 7043-51. PMID 22532680 DOI: 10.1128/JVI.00662-12  1
2012 Shi X, Jung Y, Lin LJ, Liu C, Wu C, Cann IK, Ha T. Quantitative fluorescence labeling of aldehyde-tagged proteins for single-molecule imaging. Nature Methods. 9: 499-503. PMID 22466795 DOI: 10.1038/nmeth.1954  0.96
2012 Chen K, Eargle J, Lai J, Kim H, Abeysirigunawardena S, Mayerle M, Woodson S, Ha T, Luthey-Schulten Z. Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations. The Journal of Physical Chemistry. B. 116: 6819-31. PMID 22458631 DOI: 10.1021/jp212614b  1
2012 Ha T, Kozlov AG, Lohman TM. Single-molecule views of protein movement on single-stranded DNA. Annual Review of Biophysics. 41: 295-319. PMID 22404684 DOI: 10.1146/annurev-biophys-042910-155351  1
2012 Jain A, Liu R, Xiang YK, Ha T. Single-molecule pull-down for studying protein interactions. Nature Protocols. 7: 445-52. PMID 22322217 DOI: 10.1038/nprot.2011.452  0.76
2012 Morrison EA, DeKoster GT, Dutta S, Vafabakhsh R, Clarkson MW, Bahl A, Kern D, Ha T, Henzler-Wildman KA. Antiparallel EmrE exports drugs by exchanging between asymmetric structures. Nature. 481: 45-50. PMID 22178925 DOI: 10.1038/nature10703  1
2012 Kim H, Tang GQ, Patel SS, Ha T. Opening-closing dynamics of the mitochondrial transcription pre-initiation complex. Nucleic Acids Research. 40: 371-80. PMID 21911357 DOI: 10.1093/nar/gkr736  0.6
2012 Kim H, Abeysirigunawardena S, Mayerle M, Ragunathan K, Chen K, Eargle J, Luthey-Schulten Z, Woodson S, Ha T. Single Molecule Views of the Ribosome Assembly Biophysical Journal. 102: 645a. DOI: 10.1016/j.bpj.2011.11.3512  0.84
2011 Means CK, Lygren B, Langeberg LK, Jain A, Dixon RE, Vega AL, Gold MG, Petrosyan S, Taylor SS, Murphy AN, Ha T, Santana LF, Tasken K, Scott JD. An entirely specific type I A-kinase anchoring protein that can sequester two molecules of protein kinase A at mitochondria. Proceedings of the National Academy of Sciences of the United States of America. 108: E1227-35. PMID 22084075 DOI: 10.1073/pnas.1107182108  1
2011 Zhou R, Kunzelmann S, Webb MR, Ha T. Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity. Nano Letters. 11: 5482-8. PMID 22023515 DOI: 10.1021/nl2032876  0.76
2011 Ha T, Myong S. A single-molecule view of chaperonin cooperativity. Proceedings of the National Academy of Sciences of the United States of America. 108: 16865-6. PMID 21957072 DOI: 10.1073/pnas.1113313108  1
2011 Balci H, Arslan S, Myong S, Lohman TM, Ha T. Single-molecule nanopositioning: structural transitions of a helicase-DNA complex during ATP hydrolysis. Biophysical Journal. 101: 976-84. PMID 21843490 DOI: 10.1016/j.bpj.2011.07.010  1
2011 Ragunathan K, Joo C, Ha T. Real-time observation of strand exchange reaction with high spatiotemporal resolution. Structure (London, England : 1993). 19: 1064-73. PMID 21827943 DOI: 10.1016/j.str.2011.06.009  1
2011 Hwang KH, Ahn JY, Kim S, Park JH, Ha TY. Abietic acid has an anti-obesity effect in mice fed a high-fat diet. Journal of Medicinal Food. 14: 1052-6. PMID 21812648 DOI: 10.1089/jmf.2010.1471  0.84
2011 Honda M, Okuno Y, Yoo J, Ha T, Spies M. Tyrosine phosphorylation enhances RAD52-mediated annealing by modulating its DNA binding. The Embo Journal. 30: 3368-82. PMID 21804533 DOI: 10.1038/emboj.2011.238  0.72
2011 Zhou R, Kozlov AG, Roy R, Zhang J, Korolev S, Lohman TM, Ha T. SSB functions as a sliding platform that migrates on DNA via reptation. Cell. 146: 222-32. PMID 21784244 DOI: 10.1016/j.cell.2011.07.027  1
2011 Jia H, Korolev S, Niedziela-Majka A, Maluf NK, Gauss GH, Myong S, Ha T, Waksman G, Lohman TM. Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding. Journal of Molecular Biology. 411: 633-48. PMID 21704638 DOI: 10.1016/j.jmb.2011.06.019  1
2011 Yang SK, Shi X, Park S, Doganay S, Ha T, Zimmerman SC. Monovalent, clickable, uncharged, water-soluble perylenediimide-cored dendrimers for target-specific fluorescent biolabeling. Journal of the American Chemical Society. 133: 9964-7. PMID 21671621 DOI: 10.1021/ja206097g  1
2011 Lamboy JA, Kim H, Lee KS, Ha T, Komives EA. Visualization of the nanospring dynamics of the IkappaBalpha ankyrin repeat domain in real time. Proceedings of the National Academy of Sciences of the United States of America. 108: 10178-83. PMID 21628581 DOI: 10.1073/pnas.1102226108  1
2011 Jain A, Liu R, Ramani B, Arauz E, Ishitsuka Y, Ragunathan K, Park J, Chen J, Xiang YK, Ha T. Probing cellular protein complexes using single-molecule pull-down. Nature. 473: 484-8. PMID 21614075 DOI: 10.1038/nature10016  1
2011 Lee G, Yoo J, Leslie BJ, Ha T. Single-molecule analysis reveals three phases of DNA degradation by an exonuclease. Nature Chemical Biology. 7: 367-74. PMID 21552271 DOI: 10.1038/nchembio.561  1
2011 Kim SK, Ha T, Schermann JP. Editorial on nanobiology. Physical Chemistry Chemical Physics : Pccp. 13: 9916-7. PMID 21541384 DOI: 10.1039/c1cp90058g  0.6
2011 Zhu Y, Li T, Song J, Liu C, Hu Y, Que L, Ha T, Kelley J, Chen Q, Li C, Li Y. The TIR/BB-loop mimetic AS-1 prevents cardiac hypertrophy by inhibiting IL-1R-mediated MyD88-dependent signaling. Basic Research in Cardiology. 106: 787-99. PMID 21533832 DOI: 10.1007/s00395-011-0182-z  0.96
2011 Lee JS, Kim DH, Lee CM, Ha TK, Noh KT, Park JW, Heo DR, Son KH, Jung ID, Lee EK, Shin YK, Ahn SC, Park YM. Deoxypodophyllotoxin Induces a Th1 Response and Enhances the Antitumor Efficacy of a Dendritic Cell-based Vaccine. Immune Network. 11: 79-94. PMID 21494377 DOI: 10.4110/in.2011.11.1.79  0.96
2011 Zhang Z, Kottadiel VI, Vafabakhsh R, Dai L, Chemla YR, Ha T, Rao VB. A promiscuous DNA packaging machine from bacteriophage T4. Plos Biology. 9: e1000592. PMID 21358801 DOI: 10.1371/journal.pbio.1000592  1
2011 Liu C, McKinney MC, Chen YH, Earnest TM, Shi X, Lin LJ, Ishino Y, Dahmen K, Cann IK, Ha T. Reverse-chaperoning activity of an AAA+ protein. Biophysical Journal. 100: 1344-52. PMID 21354408 DOI: 10.1016/j.bpj.2011.01.057  1
2011 Comstock MJ, Ha T, Chemla YR. Ultrahigh-resolution optical trap with single-fluorophore sensitivity. Nature Methods. 8: 335-40. PMID 21336286 DOI: 10.1038/nmeth.1574  1
2011 Shi X, Ha T. Seeing a molecular machine self-renew. Proceedings of the National Academy of Sciences of the United States of America. 108: 3459-60. PMID 21325610 DOI: 10.1073/pnas.1100150108  0.96
2011 Brenner MD, Zhou R, Ha T. Forcing a connection: impacts of single-molecule force spectroscopy on in vivo tension sensing. Biopolymers. 95: 332-44. PMID 21267988 DOI: 10.1002/bip.21587  0.76
2011 Kim SK, Ha T, Schermann JP. Homochirality and the origin of life. Editorial of the PCCP themed issue. Physical Chemistry Chemical Physics : Pccp. 13: 804-5. PMID 21140025 DOI: 10.1039/c0cp90114h  0.6
2011 Park JH, Ahn J, Kim S, Kwon DY, Ha TY. Murine hepatic miRNAs expression and regulation of gene expression in diet-induced obese mice. Molecules and Cells. 31: 33-8. PMID 21120623 DOI: 10.1007/s10059-011-0009-7  0.84
2010 Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. Single-molecule four-color FRET. Angewandte Chemie (International Ed. in English). 49: 9922-5. PMID 21104966 DOI: 10.1002/anie.201005402  1
2010 Lee G, Hartung S, Hopfner KP, Ha T. Reversible and controllable nanolocomotion of an RNA-processing machinery. Nano Letters. 10: 5123-30. PMID 21082788 DOI: 10.1021/nl103754z  1
2010 Ishitsuka Y, Okumus B, Arslan S, Chen KH, Ha T. Temperature-independent porous nanocontainers for single-molecule fluorescence studies. Analytical Chemistry. 82: 9694-701. PMID 21038883 DOI: 10.1021/ac101714u  1
2010 Diao J, Su Z, Ishitsuka Y, Lu B, Lee KS, Lai Y, Shin YK, Ha T. A single-vesicle content mixing assay for SNARE-mediated membrane fusion. Nature Communications. 1: 54. PMID 20975723 DOI: 10.1038/ncomms1054  0.88
2010 Lee JS, Jung ID, Lee CM, Park JW, Chun SH, Jeong SK, Ha TK, Shin YK, Kim DJ, Park YM. Outer membrane protein a of Salmonella enterica serovar Typhimurium activates dendritic cells and enhances Th1 polarization. Bmc Microbiology. 10: 263. PMID 20950448 DOI: 10.1186/1471-2180-10-263  0.88
2010 Kim SK, Ha T, Schermann JP. Advances in mass spectrometry for biological science. Physical Chemistry Chemical Physics : Pccp. 12: 13366-7. PMID 20877872 DOI: 10.1039/c0cp90100h  0.6
2010 Tomko EJ, Jia H, Park J, Maluf NK, Ha T, Lohman TM. 5'-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase. The Embo Journal. 29: 3826-39. PMID 20877334 DOI: 10.1038/emboj.2010.242  1
2010 Park J, Myong S, Niedziela-Majka A, Lee KS, Yu J, Lohman TM, Ha T. PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps. Cell. 142: 544-55. PMID 20723756 DOI: 10.1016/j.cell.2010.07.016  1
2010 Trabuco LG, Schreiner E, Eargle J, Cornish P, Ha T, Luthey-Schulten Z, Schulten K. The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. Journal of Molecular Biology. 402: 741-60. PMID 20691699 DOI: 10.1016/j.jmb.2010.07.056  1
2010 Kim SK, Ha T, Schermann JP. Water in biological systems. Physical Chemistry Chemical Physics : Pccp. 12: 10145-6. PMID 20686713 DOI: 10.1039/c0cp90061c  0.6
2010 Yodh JG, Schlierf M, Ha T. Insight into helicase mechanism and function revealed through single-molecule approaches. Quarterly Reviews of Biophysics. 43: 185-217. PMID 20682090 DOI: 10.1017/S0033583510000107  0.76
2010 Zhou R, Schlierf M, Ha T. Force-fluorescence spectroscopy at the single-molecule level. Methods in Enzymology. 475: 405-26. PMID 20627166 DOI: 10.1016/S0076-6879(10)75016-3  0.76
2010 Grashoff C, Hoffman BD, Brenner MD, Zhou R, Parsons M, Yang MT, McLean MA, Sligar SG, Chen CS, Ha T, Schwartz MA. Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics. Nature. 466: 263-6. PMID 20613844 DOI: 10.1038/nature09198  1
2010 Kim KW, Lee J, Lee H, Jeong WK, Won HJ, Shin YM, Jung DH, Park JI, Song GW, Ha TY, Moon DB, Kim KH, Ahn CS, Hwang S, Lee SG. Right lobe estimated blood-free weight for living donor liver transplantation: Accuracy of automated blood-free CT volumetry - Preliminary results Radiology. 256: 433-440. PMID 20551185 DOI: 10.1148/radiol.10091897  0.56
2010 Liu Y, Park J, Dahmen KA, Chemla YR, Ha T. A comparative study of multivariate and univariate hidden Markov modelings in time-binned single-molecule FRET data analysis. The Journal of Physical Chemistry. B. 114: 5386-403. PMID 20361785 DOI: 10.1021/jp9057669  1
2010 Diao J, Su Z, Lu X, Yoon TY, Shin YK, Ha T. Single-Vesicle Fusion Assay Reveals Munc18-1 Binding to the SNARE Core Is Sufficient for Stimulating Membrane Fusion. Acs Chemical Neuroscience. 1: 168-174. PMID 20300453 DOI: 10.1021/cn900034p  0.88
2010 Brenner MD, Scanlan MS, Nahas MK, Ha T, Silverman SK. Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine. Biochemistry. 49: 1596-605. PMID 20108980 DOI: 10.1021/bi9019912  1
2010 Grimme JM, Honda M, Wright R, Okuno Y, Rothenberg E, Mazin AV, Ha T, Spies M. Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes Nucleic Acids Research. 38: 2917-2930. PMID 20081207 DOI: 10.1093/nar/gkp1249  1
2010 Myong S, Ha T. Stepwise translocation of nucleic acid motors Current Opinion in Structural Biology. 20: 121-127. PMID 20061135 DOI: 10.1016/j.sbi.2009.12.008  1
2010 Okumus B, Ha T. Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy. Methods in Molecular Biology (Clifton, N.J.). 608: 81-96. PMID 20012417 DOI: 10.1007/978-1-59745-363-9_6  1
2010 Syed S, Pandey M, Patel SS, Ha T. Stepping Mechanism of Bacteriophage T7 Helicase and Priming Loop Observed Using Single-Molecule Fret Methods Biophysical Journal. 98: 66a. DOI: 10.1016/j.bpj.2009.12.376  0.56
2010 Shi X, Liu C, Cann IK, Ha T. Dynamics of An Archael DNA Polymerase Revealed By Single Molecule Fret Biophysical Journal. 98: 63a-64a. DOI: 10.1016/j.bpj.2009.12.362  0.96
2010 Zhou R, Roy R, Kozlov AG, Lohman TM, Ha T. Probing Protein Diffusion and Dissociation Mechanisms on DNA Using Fluorescence-Force Spectroscopy Biophysical Journal. 98: 269a. DOI: 10.1016/j.bpj.2009.12.1464  0.84
2010 Park J, Myong S, Niedziela-Majka A, Yu J, Lohman T, Ha T. Reeling in DNA One Base at A Time: pcrA Translocation Coupled to DNA Looping Dismantles RecA Filaments Biophysical Journal. 98: 221a. DOI: 10.1016/j.bpj.2009.12.1190  1
2009 Tang GQ, Roy R, Bandwar RP, Ha T, Patel SS. Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 106: 22175-80. PMID 20018723 DOI: 10.1073/pnas.0906979106  0.68
2009 Pandey M, Syed S, Donmez I, Patel G, Ha T, Patel SS. Coordinating DNA replication by means of priming loop and differential synthesis rate. Nature. 462: 940-3. PMID 19924126 DOI: 10.1038/nature08611  0.56
2009 Roy R, Kozlov AG, Lohman TM, Ha T. SSB protein diffusion on single-stranded DNA stimulates RecA filament formation. Nature. 461: 1092-7. PMID 19820696 DOI: 10.1038/nature08442  1
2009 Okumus B, Arslan S, Fengler SM, Myong S, Ha T. Single molecule nanocontainers made porous using a bacterial toxin. Journal of the American Chemical Society. 131: 14844-9. PMID 19788247 DOI: 10.1021/ja9042356  1
2009 Honda M, Park J, Pugh RA, Ha T, Spies M. Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase. Molecular Cell. 35: 694-703. PMID 19748362 DOI: 10.1016/j.molcel.2009.07.003  1
2009 Jena PV, Shirude PS, Okumus B, Laxmi-Reddy K, Godde F, Huc I, Balasubramanian S, Ha T. G-quadruplex DNA bound by a synthetic ligand is highly dynamic. Journal of the American Chemical Society. 131: 12522-3. PMID 19685880 DOI: 10.1021/ja903408r  1
2009 Diao J, Yoon TY, Su Z, Shin YK, Ha T. C2AB: a molecular glue for lipid vesicles with a negatively charged surface. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 7177-80. PMID 19563216 DOI: 10.1021/la901676e  0.88
2009 Li T, Wang Y, Liu C, Hu Y, Wu M, Li J, Guo L, Chen L, Chen Q, Ha T, Li C, Li Y. MyD88-dependent nuclear factor-kappaB activation is involved in fibrinogen-induced hypertrophic response of cardiomyocytes. Journal of Hypertension. 27: 1084-93. PMID 19342961 DOI: 10.1097/HJH.0b013e3283293c93  0.96
2009 Heller DA, Jin H, Martinez BM, Patel D, Miller BM, Yeung TK, Jena PV, Höbartner C, Ha T, Silverman SK, Strano MS. Multimodal optical sensing and analyte specificity using single-walled carbon nanotubes. Nature Nanotechnology. 4: 114-20. PMID 19197314 DOI: 10.1038/nnano.2008.369  1
2009 Yodh JG, Stevens BC, Kanagaraj R, Janscak P, Ha T. BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation. The Embo Journal. 28: 405-16. PMID 19165145 DOI: 10.1038/emboj.2008.298  0.6
2009 Myong S, Cui S, Cornish PV, Kirchhofer A, Gack MU, Jung JU, Hopfner KP, Ha T. Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA. Science (New York, N.Y.). 323: 1070-4. PMID 19119185 DOI: 10.1126/science.1168352  1
2009 Roy R, Kozlov AG, Lohman TM, Ha T. Erratum: SSB protein diffusion on single-stranded DNA stimulates RecA filament formation Nature. 462: 944-944. DOI: 10.1038/nature08600  0.84
2009 Liu C, Shi X, Chen Y, O'Cann IK, Ha T. Single-Molecule Dynamics of the Replication Sliding Clamp and Clamp Loader System Biophysical Journal. 96: 324a. DOI: 10.1016/j.bpj.2008.12.1625  0.96
2008 Gack MU, Kirchhofer A, Shin YC, Inn KS, Liang C, Cui S, Myong S, Ha T, Hopfner KP, Jung JU. Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction. Proceedings of the National Academy of Sciences of the United States of America. 105: 16743-8. PMID 18948594 DOI: 10.1073/pnas.0804947105  1
2008 Iqbal A, Arslan S, Okumus B, Wilson TJ, Giraud G, Norman DG, Ha T, Lilley DM. Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. Proceedings of the National Academy of Sciences of the United States of America. 105: 11176-81. PMID 18676615 DOI: 10.1073/pnas.0801707105  1
2008 Yoon TY, Lu X, Diao J, Lee SM, Ha T, Shin YK. Complexin and Ca2+ stimulate SNARE-mediated membrane fusion. Nature Structural & Molecular Biology. 15: 707-13. PMID 18552825 DOI: 10.1038/nsmb.1446  0.88
2008 Tang GQ, Roy R, Ha T, Patel SS. Transcription initiation in a single-subunit RNA polymerase proceeds through DNA scrunching and rotation of the N-terminal subdomains. Molecular Cell. 30: 567-77. PMID 18538655 DOI: 10.1016/j.molcel.2008.04.003  0.68
2008 Roy R, Hohng S, Ha T. A practical guide to single-molecule FRET. Nature Methods. 5: 507-16. PMID 18511918 DOI: 10.1038/nmeth.1208  0.72
2008 Rasnik I, Jeong YJ, McKinney SA, Rajagopal V, Patel SS, Ha T. Branch migration enzyme as a Brownian ratchet. The Embo Journal. 27: 1727-35. PMID 18511910 DOI: 10.1038/emboj.2008.106  1
2008 Joo C, Balci H, Ishitsuka Y, Buranachai C, Ha T. Advances in single-molecule fluorescence methods for molecular biology. Annual Review of Biochemistry. 77: 51-76. PMID 18412538 DOI: 10.1146/annurev.biochem.77.070606.101543  1
2007 Kim HK, Rasnik I, Liu J, Ha T, Lu Y. Dissecting metal ion-dependent folding and catalysis of a single DNAzyme. Nature Chemical Biology. 3: 763-8. PMID 17965708 DOI: 10.1038/nchembio.2007.45  1
2007 Hohng S, Zhou R, Nahas MK, Yu J, Schulten K, Lilley DM, Ha T. Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction. Science (New York, N.Y.). 318: 279-83. PMID 17932299 DOI: 10.1126/science.1146113  1
2007 Myong S, Bruno MM, Pyle AM, Ha T. Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase. Science (New York, N.Y.). 317: 513-6. PMID 17656723 DOI: 10.1126/science.1144130  1
2007 Cisse I, Okumus B, Joo C, Ha T. Fueling protein DNA interactions inside porous nanocontainers. Proceedings of the National Academy of Sciences of the United States of America. 104: 12646-50. PMID 17563361 DOI: 10.1073/pnas.0610673104  1
2007 Shirude PS, Okumus B, Ying L, Ha T, Balasubramanian S. Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene c-kit. Journal of the American Chemical Society. 129: 7484-5. PMID 17523641 DOI: 10.1021/ja070497d  1
2007 Roy R, Kozlov AG, Lohman TM, Ha T. Dynamic structural rearrangements between DNA binding modes of E. coli SSB protein. Journal of Molecular Biology. 369: 1244-57. PMID 17490681 DOI: 10.1016/j.jmb.2007.03.079  1
2007 Arluison V, Hohng S, Roy R, Pellegrini O, Régnier P, Ha T. Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA. Nucleic Acids Research. 35: 999-1006. PMID 17259214 DOI: 10.1093/nar/gkl1124  0.72
2006 Yoon TY, Okumus B, Zhang F, Shin YK, Ha T. Multiple intermediates in SNARE-induced membrane fusion. Proceedings of the National Academy of Sciences of the United States of America. 103: 19731-6. PMID 17167056 DOI: 10.1073/pnas.0606032103  1
2006 Rasnik I, McKinney SA, Ha T. Nonblinking and long-lasting single-molecule fluorescence imaging. Nature Methods. 3: 891-3. PMID 17013382 DOI: 10.1038/nmeth934  1
2006 Rasnik I, Myong S, Ha T. Unraveling helicase mechanisms one molecule at a time. Nucleic Acids Research. 34: 4225-31. PMID 16935883 DOI: 10.1093/nar/gkl452  1
2006 Lin Y, Guzman CE, McKinney MC, Nair SK, Ha T, Cann IK. Methanosarcina acetivorans flap endonuclease 1 activity is inhibited by a cognate single-stranded-DNA-binding protein. Journal of Bacteriology. 188: 6153-67. PMID 16923882 DOI: 10.1128/JB.00045-06  1
2006 Joo C, McKinney SA, Nakamura M, Rasnik I, Myong S, Ha T. Real-time observation of RecA filament dynamics with single monomer resolution. Cell. 126: 515-27. PMID 16901785 DOI: 10.1016/j.cell.2006.06.042  1
2006 McKinney SA, Joo C, Ha T. Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophysical Journal. 91: 1941-51. PMID 16766620 DOI: 10.1529/biophysj.106.082487  1
2006 Myong S, Stevens BC, Ha T. Bridging conformational dynamics and function using single-molecule spectroscopy. Structure (London, England : 1993). 14: 633-43. PMID 16615904 DOI: 10.1016/j.str.2006.02.005  1
2006 Toprak E, Enderlein J, Syed S, McKinney SA, Petschek RG, Ha T, Goldman YE, Selvin PR. Defocused orientation and position imaging (DOPI) of myosin V. Proceedings of the National Academy of Sciences of the United States of America. 103: 6495-9. PMID 16614073 DOI: 10.1073/pnas.0507134103  1
2006 Buranachai C, McKinney SA, Ha T. Single molecule nanometronome. Nano Letters. 6: 496-500. PMID 16522050 DOI: 10.1021/nl052492p  1
2005 Lee JY, Okumus B, Kim DS, Ha T. Extreme conformational diversity in human telomeric DNA. Proceedings of the National Academy of Sciences of the United States of America. 102: 18938-43. PMID 16365301 DOI: 10.1073/pnas.0506144102  1
2005 Myong S, Rasnik I, Joo C, Lohman TM, Ha T. Repetitive shuttling of a motor protein on DNA. Nature. 437: 1321-5. PMID 16251956 DOI: 10.1038/nature04049  1
2005 Rasnik I, McKinney SA, Ha T. Surfaces and orientations: much to FRET about? Accounts of Chemical Research. 38: 542-8. PMID 16028888 DOI: 10.1021/ar040138c  1
2005 McKinney SA, Freeman AD, Lilley DM, Ha T. Observing spontaneous branch migration of Holliday junctions one step at a time. Proceedings of the National Academy of Sciences of the United States of America. 102: 5715-20. PMID 15824311 DOI: 10.1073/pnas.0409328102  1
2005 Liu J, Déclais AC, McKinney SA, Ha T, Norman DG, Lilley DM. Stereospecific effects determine the structure of a four-way DNA junction. Chemistry & Biology. 12: 217-28. PMID 15734649 DOI: 10.1016/j.chembiol.2004.12.006  1
2005 Robbins JB, McKinney MC, Guzman CE, Sriratana B, Fitz-Gibbon S, Ha T, Cann IK. The euryarchaeota, nature's medium for engineering of single-stranded DNA-binding proteins. The Journal of Biological Chemistry. 280: 15325-39. PMID 15671019 DOI: 10.1074/jbc.M412870200  1
2004 Nahas MK, Wilson TJ, Hohng S, Jarvie K, Lilley DM, Ha T. Observation of internal cleavage and ligation reactions of a ribozyme. Nature Structural & Molecular Biology. 11: 1107-13. PMID 15475966 DOI: 10.1038/nsmb842  1
2004 Okumus B, Wilson TJ, Lilley DM, Ha T. Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic. Biophysical Journal. 87: 2798-806. PMID 15454471 DOI: 10.1529/biophysj.104.045971  1
2004 Hohng S, Joo C, Ha T. Single-molecule three-color FRET Biophysical Journal. 87: 1328-1337. PMID 15298935 DOI: 10.1529/biophysj.104.043935  1
2004 Joo C, McKinney SA, Lilley DM, Ha T. Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy. Journal of Molecular Biology. 341: 739-51. PMID 15288783 DOI: 10.1016/j.jmb.2004.06.024  1
2004 Rasnik I, Myong S, Cheng W, Lohman TM, Ha T. DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes. Journal of Molecular Biology. 336: 395-408. PMID 14757053 DOI: 10.1016/j.jmb.2003.12.031  1
2004 McKinney SA, Tan E, Wilson TJ, Nahas MK, Déclais AC, Clegg RM, Lilley DM, Ha T. Single-molecule studies of DNA and RNA four-way junctions. Biochemical Society Transactions. 32: 41-5. PMID 14748709 DOI: 10.1042/  1
2004 Robbins JB, Murphy MC, White BA, Mackie RI, Ha T, Cann IK. Functional analysis of multiple single-stranded DNA-binding proteins from Methanosarcina acetivorans and their effects on DNA synthesis by DNA polymerase BI. The Journal of Biological Chemistry. 279: 6315-26. PMID 14676214 DOI: 10.1074/jbc.M304491200  0.8
2003 Tan E, Wilson TJ, Nahas MK, Clegg RM, Lilley DM, Ha T. A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate. Proceedings of the National Academy of Sciences of the United States of America. 100: 9308-13. PMID 12883002 DOI: 10.1073/pnas.1233536100  1
2003 Ha T, Xu J. Photodestruction intermediates probed by an adjacent reporter molecule. Physical Review Letters. 90: 223002. PMID 12857312 DOI: 10.1103/PhysRevLett.90.223002  0.56
2003 Yildiz A, Forkey JN, McKinney SA, Ha T, Goldman YE, Selvin PR. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science (New York, N.Y.). 300: 2061-5. PMID 12791999 DOI: 10.1126/science.1084398  1
2003 McKinney SA, Déclais AC, Lilley DM, Ha T. Structural dynamics of individual Holliday junctions. Nature Structural Biology. 10: 93-7. PMID 12496933 DOI: 10.1038/nsb883  1
2002 Johnson JM, Ha T, Chu S, Boxer SG. Early steps of supported bilayer formation probed by single vesicle fluorescence assays. Biophysical Journal. 83: 3371-9. PMID 12496104 DOI: 10.1016/S0006-3495(02)75337-X  1
2002 Ha T, Rasnik I, Cheng W, Babcock HP, Gauss GH, Lohman TM, Chu S. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature. 419: 638-41. PMID 12374984 DOI: 10.1038/nature01083  1
2002 Kim HD, Nienhaus GU, Ha T, Orr JW, Williamson JR, Chu S. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proceedings of the National Academy of Sciences of the United States of America. 99: 4284-9. PMID 11929999 DOI: 10.1073/pnas.032077799  1
2000 Zhuang X, Ha T, Kim HD, Centner T, Labeit S, Chu S. Fluorescence quenching: A tool for single-molecule protein-folding study. Proceedings of the National Academy of Sciences of the United States of America. 97: 14241-4. PMID 11121030 DOI: 10.1073/pnas.97.26.14241  1
2000 Zhuang X, Bartley LE, Babcock HP, Russell R, Ha T, Herschlag D, Chu S. A single-molecule study of RNA catalysis and folding. Science (New York, N.Y.). 288: 2048-51. PMID 10856219 DOI: 10.1126/science.288.5473.2048  1
1999 Ha T, Zhuang X, Kim HD, Orr JW, Williamson JR, Chu S. Ligand-induced conformational changes observed in single RNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 96: 9077-82. PMID 10430898 DOI: 10.1073/pnas.96.16.9077  1
1999 Deniz AA, Dahan M, Grunwell JR, Ha T, Faulhaber AE, Chemla DS, Weiss S, Schultz PG. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations. Proceedings of the National Academy of Sciences of the United States of America. 96: 3670-5. PMID 10097095 DOI: 10.1073/pnas.96.7.3670  0.48
1999 Ha T, Ting AY, Liang J, Caldwell WB, Deniz AA, Chemla DS, Schultz PG, Weiss S. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proceedings of the National Academy of Sciences of the United States of America. 96: 893-8. PMID 9927664 DOI: 10.1073/pnas.96.3.893  1
1998 Enderle T, Ha T, Chemla DS, Weiss S. Near-field fluorescence microscopy of cells. Ultramicroscopy. 71: 303-9. PMID 9566345 DOI: 10.1016/S0304-3991(97)00075-2  1
1997 Enderle T, Ha T, Ogletree DF, Chemla DS, Magowan C, Weiss S. Membrane specific mapping and colocalization of malarial and host skeletal proteins in the Plasmodium falciparum infected erythrocyte by dual-color near-field scanning optical microscopy. Proceedings of the National Academy of Sciences of the United States of America. 94: 520-5. PMID 9012816  0.48
1996 Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S. Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor Proceedings of the National Academy of Sciences of the United States of America. 93: 6264-6268. PMID 8692803 DOI: 10.1073/pnas.93.13.6264  1
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