Daniel M. Czajkowsky, Ph.D. - Publications

2000 University of Virginia, Charlottesville, VA 
General Biophysics

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu W, Guo Y, Wang K, Zhou X, Wang Y, Lü J, Shao Z, Hu J, Czajkowsky DM, Li B. Atomic force microscopy-based single-molecule force spectroscopy detects DNA base mismatches. Nanoscale. PMID 31535117 DOI: 10.1039/c9nr05234h  1
2019 Zhang J, Yang Y, Yang S, Song J, Wang Y, Liu X, Yang Q, Shen Y, Wang S, Yang H, Lü J, Li B, Fang H, Lal R, Czajkowsky DM, et al. Unconventional Atomic Structure of Graphene Sheets on Solid Substrates. Small (Weinheim An Der Bergstrasse, Germany). e1902637. PMID 31468738 DOI: 10.1002/smll.201902637  0.36
2019 Chen J, Zhu C, Wang C, Hu C, Czajkowsky DM, Guo Y, Liu B, Shao Z. Evidence for heightened genetic instability in precancerous spasmolytic polypeptide expressing gastric glands. Journal of Medical Genetics. PMID 30877236 DOI: 10.1136/jmedgenet-2018-105752  1
2018 Li G, Huang S, Yang S, Wang J, Cao J, Czajkowsky DM, Shao Z, Zhu X. abLIM1 constructs non-erythroid cortical actin networks to prevent mechanical tension-induced blebbing. Cell Discovery. 4: 42. PMID 30062045 DOI: 10.1038/s41421-018-0040-3  1
2018 Pacheco S, Gómez I, Sánchez J, García-Gómez BI, Czajkowsky DM, Zhang J, Soberón M, Bravo A. Helix α-3 inter-molecular salt bridges and conformational changes are essential for toxicity of Bacillus thuringiensis 3D-Cry toxin family. Scientific Reports. 8: 10331. PMID 29985464 DOI: 10.1038/s41598-018-28753-8  0.32
2018 Fang K, Chen X, Li X, Shen Y, Sun J, Czajkowsky DM, Shao Z. Super-Resolution Imaging of Individual Human Sub-Chromosomal Regions In Situ Reveals Nanoscopic Building Blocks of Higher-Order Structure. Acs Nano. PMID 29715004 DOI: 10.1021/acsnano.8b01963  1
2018 Wang Q, Sun Q, Czajkowsky DM, Shao Z. Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells. Nature Communications. 9: 188. PMID 29335463 DOI: 10.1038/s41467-017-02526-9  1
2017 Cao H, Shen Y, Sun Y, Tao SC, Czajkowsky DM, Shao Z. Toward the development of magnetic tweezers for high-throughput measurement of protein-protein interactions. Acta Biochimica Et Biophysica Sinica. 1-3. PMID 28369167 DOI: 10.1093/abbs/gmx027  1
2017 Lai M, Li X, Li J, Hu Y, Czajkowsky DM, Shao Z. Improved clearing of lipid droplet-rich tissues for three-dimensional structural elucidation. Acta Biochimica Et Biophysica Sinica. 1-3. PMID 28338831 DOI: 10.1093/abbs/gmx018  1
2017 Lloyd KA, Wang J, Urban BC, Czajkowsky DM, Pleass RJ. Glycan-independent binding and internalization of human IgM to FCMR, its cognate cellular receptor. Scientific Reports. 7: 42989. PMID 28230186 DOI: 10.1038/srep42989  0.32
2016 Li H, Hu C, Bai L, Li H, Li M, Zhao X, Czajkowsky DM, Shao Z. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27559081 DOI: 10.1093/dnares/dsw040  1
2016 Yang L, He J, Shen Y, Li X, Sun J, Czajkowsky DM, Shao Z. Nanoscopic characterization of the water vapor-salt interfacial layer reveals a unique biphasic adsorption process. Scientific Reports. 6: 31688. PMID 27527905 DOI: 10.1038/srep31688  1
2016 Qin L, Zhang J, Sun J, Czajkowsky DM, Shao Z. Development of a low-noise cryogenic atomic force microscope for high resolution imaging of large biological complexes. Acta Biochimica Et Biophysica Sinica. PMID 27521793 DOI: 10.1093/abbs/gmw074  1
2016 Guo Y, Huang A, Hu C, Zhou Y, Zhang X, Czajkowsky DM, Li J, Cheng S, Shen R, Gu J, Liu B, Shao Z. Complex clonal mosaicism within microdissected intestinal metaplastic glands without concurrent gastric cancer. Journal of Medical Genetics. PMID 27287394 DOI: 10.1136/jmedgenet-2016-103872  1
2016 Meng Y, Yi X, Li X, Hu C, Wang J, Bai L, Czajkowsky DM, Shao Z. The non-coding RNA composition of the mitotic chromosome by 5'-tag sequencing. Nucleic Acids Research. PMID 27016738 DOI: 10.1093/nar/gkw195  1
2015 Tu S, Guo SJ, Chen CS, Liu CX, Jiang HW, Ge F, Deng JY, Zhou YM, Czajkowsky DM, Li Y, Qi BR, Ahn YH, Cole PA, Zhu H, Tao SC. YcgC represents a new protein deacetylase family in prokaryotes. Elife. 4. PMID 26716769 DOI: 10.7554/eLife.05322  1
2015 Czajkowsky DM, Sun J, Shao Z. Single molecule compression reveals intra-protein forces drive cytotoxin pore formation. Elife. 4. PMID 26652734 DOI: 10.7554/eLife.08421  1
2015 Zhang HN, Yang L, Ling JY, Czajkowsky DM, Wang JF, Zhang XW, Zhou YM, Ge F, Yang MK, Xiong Q, Guo SJ, Le HY, Wu SF, Yan W, Liu B, et al. Systematic identification of arsenic-binding proteins reveals that hexokinase-2 is inhibited by arsenic. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598702 DOI: 10.1073/pnas.1521316112  1
2015 He J, Wang J, Hu J, Sun J, Czajkowsky DM, Shao Z. Single molecule atomic force microscopy of aerolysin pore complexes reveals unexpected star-shaped topography. Journal of Molecular Recognition : Jmr. PMID 26537438 DOI: 10.1002/jmr.2517  1
2015 Zhang Y, Tang Y, Sun S, Wang Z, Wu W, Zhao X, Czajkowsky DM, Li Y, Tian J, Xu L, Wei W, Deng Y, Shi Q. Single-Cell Codetection of Metabolic Activity, Intracellular Functional Proteins, and Genetic Mutations from Rare Circulating Tumor Cells. Analytical Chemistry. PMID 26378744 DOI: 10.1021/acs.analchem.5b01901  1
2015 Semblat JP, Ghumra A, Czajkowsky DM, Wallis R, Mitchell DA, Raza A, Rowe JA. Identification of the minimal binding region of a Plasmodium falciparum IgM binding PfEMP1 domain. Molecular and Biochemical Parasitology. PMID 26094597 DOI: 10.1016/j.molbiopara.2015.06.001  1
2015 Li J, Czajkowsky DM, Li X, Shao Z. Fast immuno-labeling by electrophoretically driven infiltration for intact tissue imaging. Scientific Reports. 5: 10640. PMID 26013317 DOI: 10.1038/srep10640  1
2015 Czajkowsky DM, Andersen JT, Fuchs A, Wilson TJ, Mekhaiel D, Colonna M, He J, Shao Z, Mitchell DA, Wu G, Dell A, Haslam S, Lloyd KA, Moore SC, Sandlie I, et al. Developing the IVIG biomimetic, hexa-Fc, for drug and vaccine applications. Scientific Reports. 5: 9526. PMID 25912958 DOI: 10.1038/srep09526  1
2015 Zhou SM, Cheng L, Guo SJ, Wang Y, Czajkowsky DM, Gao H, Hu XF, Tao SC. Lectin RCA-I specifically binds to metastasis-associated cell surface glycans in triple-negative breast cancer. Breast Cancer Research : Bcr. 17: 36. PMID 25848723 DOI: 10.1186/s13058-015-0544-9  1
2015 Czajkowsky DM, Sun J, Shao Z. Illuminated up close: near-field optical microscopy of cell surfaces. Nanomedicine : Nanotechnology, Biology, and Medicine. 11: 119-25. PMID 25220907 DOI: 10.1016/j.nano.2014.08.002  1
2015 Kang YN, Lai DP, Ooi HS, Shen TT, Kou Y, Tian J, Czajkowsky DM, Shao Z, Zhao X. Genome-wide profiling of untranslated regions by paired-end ditag sequencing reveals unexpected transcriptome complexity in yeast. Molecular Genetics and Genomics : Mgg. 290: 217-24. PMID 25213602 DOI: 10.1007/s00438-014-0913-6  1
2014 Deng Y, Zhang Y, Sun S, Wang Z, Wang M, Yu B, Czajkowsky DM, Liu B, Li Y, Wei W, Shi Q. An integrated microfluidic chip system for single-cell secretion profiling of rare circulating tumor cells. Scientific Reports. 4: 7499. PMID 25511131 DOI: 10.1038/srep07499  1
2014 Yang L, Czajkowsky DM, Sun J, Hu J, Shao Z. Anomalous surface fatigue in a nano-layered material. Advanced Materials (Deerfield Beach, Fla.). 26: 6478-82. PMID 25163860 DOI: 10.1002/adma.201401906  1
2014 He Jf, Hu J, Sun Jl, Czajkowsky DM. Re-evaluation of the widely applied force-frequency relation for frequency-modulation AFM under solution Journal of Shanghai Jiaotong University (Science). 19: 612-616. DOI: 10.1007/s12204-014-1549-8  1
2014 Luo Ml, Shao Zf, Shen Y, Czajkowsky DM, Sun Jl. Novel experimental strategy for high resolution AFM imaging of membrane-associated bacterial toxins Journal of Shanghai Jiaotong University (Science). 19: 569-573. DOI: 10.1007/s12204-014-1543-1  1
2014 Zhang Jj, Lü Jh, Sun Jl, Hu J, Czajkowsky DM, Shen Y. Direct resolution of the pitch of DNA on positively charged lipid bilayers by frequency-modulation AFM Journal of Shanghai Jiaotong University (Science). 19: 565-568. DOI: 10.1007/s12204-014-1542-2  1
2013 Wu N, Czajkowsky DM, Zhang J, Qu J, Ye M, Zeng D, Zhou X, Hu J, Shao Z, Li B, Fan C. Molecular threading and tunable molecular recognition on DNA origami nanostructures. Journal of the American Chemical Society. 135: 12172-5. PMID 23924191 DOI: 10.1021/ja403863a  1
2013 Shen Y, Czajkowsky DM, Li X, Sun J, Hu J, Shao Z. A novel electromagnetic apparatus for rapid multiplex single molecule force spectroscopy. Journal of Nanoscience and Nanotechnology. 13: 1232-6. PMID 23646609 DOI: 10.1166/jnn.2013.6099  1
2013 Zhang J, Czajkowsky DM, Shen Y, Sun J, Fan C, Hu J, Shao Z. Bias controlled capacitive driven cantilever oscillation for high resolution dynamic force microscopy Applied Physics Letters. 102. DOI: 10.1063/1.4793205  1
2012 Guo Y, Yang Y, Zhou J, Czajkowsky DM, Liu B, Shao Z. Microdissection of spatially identified single nuclei in a solid tumor for single cell whole genome sequencing. Biotechniques. 52. PMID 26307250 DOI: 10.2144/000113860  1
2012 Czajkowsky DM, Hu J, Shao Z, Pleass RJ. Fc-fusion proteins: new developments and future perspectives. Embo Molecular Medicine. 4: 1015-28. PMID 22837174 DOI: 10.1002/emmm.201201379  1
2012 Zhou X, Liu G, Yamato K, Shen Y, Cheng R, Wei X, Bai W, Gao Y, Li H, Liu Y, Liu F, Czajkowsky DM, Wang J, Dabney MJ, Cai Z, et al. Self-assembling subnanometer pores with unusual mass-transport properties. Nature Communications. 3: 949. PMID 22805556 DOI: 10.1038/ncomms1949  1
2012 Czajkowsky DM, Li L, Sun J, Hu J, Shao Z. Heteroepitaxial streptavidin nanocrystals reveal critical role of proton "fingers" and subsurface atoms in determining adsorbed protein orientation. Acs Nano. 6: 190-8. PMID 22148246 DOI: 10.1021/nn203356p  1
2012 Zhou X, Liu G, Yamato K, Shen Y, Cheng R, Wei X, Bai W, Gao Y, Li H, Liu Y, Liu F, Czajkowsky DM, Wang J, Dabney MJ, Cai Z, et al. Self-assembling subnanometer pores with unusual mass-transport properties Nature Communications. 3. DOI: 10.1038/ncomms1949  1
2011 Mekhaiel DN, Czajkowsky DM, Andersen JT, Shi J, El-Faham M, Doenhoff M, McIntosh RS, Sandlie I, He J, Hu J, Shao Z, Pleass RJ. Polymeric human Fc-fusion proteins with modified effector functions. Scientific Reports. 1: 124. PMID 22355641 DOI: 10.1038/srep00124  1
2011 Wu N, Zhou X, Czajkowsky DM, Ye M, Zeng D, Fu Y, Fan C, Hu J, Li B. In situ monitoring of single molecule binding reactions with time-lapse atomic force microscopy on functionalized DNA origami. Nanoscale. 3: 2481-4. PMID 21526259 DOI: 10.1039/c1nr10181a  1
2010 Czajkowsky DM, Salanti A, Ditlev SB, Shao Z, Ghumra A, Rowe JA, Pleass RJ. IgM, Fc mu Rs, and malarial immune evasion. Journal of Immunology (Baltimore, Md. : 1950). 184: 4597-603. PMID 20410497 DOI: 10.4049/jimmunol.1000203  1
2009 Czajkowsky DM, Shao Z. The human IgM pentamer is a mushroom-shaped molecule with a flexural bias. Proceedings of the National Academy of Sciences of the United States of America. 106: 14960-5. PMID 19706439 DOI: 10.1073/pnas.0903805106  1
2008 Liu J, Czajkowsky DM, Liang S, Shao Z. Cell cycle-dependent nucleosome occupancy at cohesin binding sites in yeast chromosomes. Genomics. 91: 274-80. PMID 18178375 DOI: 10.1016/j.ygeno.2007.11.006  1
2008 Czajkowsky DM, Liu J, Hamlin JL, Shao Z. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. Journal of Molecular Biology. 375: 12-9. PMID 17999930 DOI: 10.1016/j.jmb.2007.10.046  1
2006 McClain MS, Czajkowsky DM, Torres VJ, Szabo G, Shao Z, Cover TL. Random mutagenesis of Helicobacter pylori vacA to identify amino acids essential for vacuolating cytotoxic activity. Infection and Immunity. 74: 6188-95. PMID 16954403 DOI: 10.1128/IAI.00915-06  1
2006 Sheng S, Czajkowsky DM, Shao Z. Localization of linker histone in chromatosomes by cryo-atomic force microscopy. Biophysical Journal. 91: L35-7. PMID 16782797 DOI: 10.1529/biophysj.106.090423  1
2005 Czajkowsky DM, Iwamoto H, Szabo G, Cover TL, Shao Z. Mimicry of a host anion channel by a Helicobacter pylori pore-forming toxin. Biophysical Journal. 89: 3093-101. PMID 16100263 DOI: 10.1529/biophysj.105.066746  1
2004 Czajkowsky DM, Hotze EM, Shao Z, Tweten RK. Vertical collapse of a cytolysin prepore moves its transmembrane beta-hairpins to the membrane. The Embo Journal. 23: 3206-15. PMID 15297878 DOI: 10.1038/sj.emboj.7600350  1
2004 Czajkowsky DM. Fluorescence anisotropy of oligomeric proteins Spectroscopy. 18: 85-93.  1
2003 Czajkowsky DM, Shao Z. Inhibition of protein adsorption to muscovite mica by monovalent cations. Journal of Microscopy. 211: 1-7. PMID 12839545 DOI: 10.1046/j.1365-2818.2003.01208.x  1
2002 Czajkowsky DM, Shao Z. Supported lipid bilayers as effective substrates for atomic force microscopy. Methods in Cell Biology. 68: 231-41. PMID 12053732  1
2002 Hotze EM, Heuck AP, Czajkowsky DM, Shao Z, Johnson AE, Tweten RK. Monomer-monomer interactions drive the prepore to pore conversion of a beta-barrel-forming cholesterol-dependent cytolysin. The Journal of Biological Chemistry. 277: 11597-605. PMID 11799121 DOI: 10.1074/jbc.M111039200  1
2000 Czajkowsky DM, Iwamoto H, Shao Z. Atomic force microscopy in structural biology: from the subcellular to the submolecular. Journal of Electron Microscopy. 49: 395-406. PMID 11108027  1
2000 Liang S, Medich D, Czajkowsky DM, Sheng S, Yuan JY, Shao Z. Thermal noise reduction of mechanical oscillators by actively controlled external dissipative forces Ultramicroscopy. 84: 119-25. PMID 10896145 DOI: 10.1016/S0304-3991(00)00039-5  1
1999 Hostetler JL, Smith AN, Czajkowsky DM, Norris PM. Measurement of the electron-phonon coupling factor dependence on film thickness and grain size in Au, Cr, and Al. Applied Optics. 38: 3614-20. PMID 18319965  1
1999 Vinion-Dubiel AD, McClain MS, Czajkowsky DM, Iwamoto H, Ye D, Cao P, Schraw W, Szabo G, Blanke SR, Shao Z, Cover TL. A dominant negative mutant of Helicobacter pylori vacuolating toxin (VacA) inhibits VacA-induced cell vacuolation. The Journal of Biological Chemistry. 274: 37736-42. PMID 10608833 DOI: 10.1074/jbc.274.53.37736  1
1999 Sheng S, Czajkowsky DM, Shao Z. AFM tips: how sharp are they? Journal of Microscopy. 196: 1-5. PMID 10540250 DOI: 10.1046/j.1365-2818.1999.00601.x  1
1999 Van Huizen R, Czajkowsky DM, Shi D, Shao Z, Li M. Images of oligomeric Kvβ2, a modulatory subunit of potassium channels Febs Letters. 457: 107-111. PMID 10486574 DOI: 10.1016/S0014-5793(99)01021-2  1
1999 Iwamoto H, Czajkowsky DM, Cover TL, Szabo G, Shao Z. VacA from Helicobacter pylori: A hexameric chloride channel Febs Letters. 450: 101-104. PMID 10350065 DOI: 10.1016/S0014-5793(99)00474-3  1
1999 Czajkowsky DM, Iwamoto H, Cover TL, Shao Z. The vacuolating toxin from Helicobacter pylori forms hexameric pores in lipid bilayers at low pH Proceedings of the National Academy of Sciences of the United States of America. 96: 2001-2006. PMID 10051584 DOI: 10.1073/pnas.96.5.2001  1
1998 Czajkowsky DM, Allen MJ, Elings V, Shao Z. Direct visualization of surface charge in aqueous solution. Ultramicroscopy. 74: 1-5. PMID 9703699 DOI: 10.1016/S0304-3991(98)00024-2  1
1998 Czajkowsky DM, Shao Z. Submolecular resolution of single macromolecules with atomic force microscopy Febs Letters. 430: 51-54. PMID 9678593 DOI: 10.1016/S0014-5793(98)00461-X  1
1998 Czajkowsky DM, Sheng S, Shao Z. Staphylococcal alpha-hemolysin can form hexamers in phospholipid bilayers. Journal of Molecular Biology. 276: 325-30. PMID 9512705 DOI: 10.1006/jmbi.1997.1535  1
1996 Mou J, Czajkowsky DM, Sheng SJ, Ho R, Shao Z. High resolution surface structure of E. coli GroES oligomer by atomic force microscopy. Febs Letters. 381: 161-4. PMID 8641429 DOI: 10.1016/0014-5793(96)00112-3  1
1996 Mou J, Czajkowsky DM, Shao Z. Gramicidin A aggregation in supported gel state phosphatidylcholine bilayers Biochemistry. 35: 3222-3226. PMID 8605157 DOI: 10.1021/bi9520242  1
1996 Shao Z, Mou J, Czajkowsky DM, Yang J, Yuan JY. Biological atomic force microscopy: What is achieved and what is needed Advances in Physics. 45: 1-86.  1
1995 Mou J, Czajkowsky DM, Zhang Y, Shao Z. High-resolution atomic-force microscopy of DNA: the pitch of the double helix Febs Letters. 371: 279-282. PMID 7556610 DOI: 10.1016/0014-5793(95)00906-P  1
1995 Czajkowsky DM, Huang C, Shao Z. Ripple phase in asymmetric unilamellar bilayers with saturated and unsaturated phospholipids Biochemistry. 34: 12501-12505. PMID 7547997  1
1993 Cao Y, Váró G, Klinger AL, Czajkowsky DM, Braiman MS, Needleman R, Lanyi JK. Proton transfer from Asp-96 to the bacteriorhodopsin schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change Biochemistry. 32: 1981-1990. PMID 8448157  1
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