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Sharad Ramanathan - Publications

Affiliations: 
Molecular and Cellular Biology Harvard University, Cambridge, MA, United States 
Area:
Biology
Website:
http://www.fas.harvard.edu/~biophys/Sharad_Ramanathan.htm
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Anand GM, Megale HC, Murphy SH, Weis T, Lin Z, He Y, Wang X, Liu J, Ramanathan S. Controlling organoid symmetry breaking uncovers an excitable system underlying human axial elongation. Cell. PMID 36657443 DOI: 10.1016/j.cell.2022.12.043  0.752
2021 Valcourt JR, Huang RE, Kundu S, Venkatasubramanian D, Kingston RE, Ramanathan S. Modulating mesendoderm competence during human germ layer differentiation. Cell Reports. 37: 109990. PMID 34758327 DOI: 10.1016/j.celrep.2021.109990  0.736
2020 Melton S, Ramanathan S. Discovering a sparse set of pairwise discriminating features in high dimensional data. Bioinformatics (Oxford, England). PMID 32730566 DOI: 10.1093/Bioinformatics/Btaa690  0.78
2019 Zhang Z, Zwick S, Loew E, Grimley JS, Ramanathan S. Mouse embryo geometry drives formation of robust signaling gradients through receptor localization. Nature Communications. 10: 4516. PMID 31586065 DOI: 10.1038/S41467-019-12533-7  0.772
2019 Lee JB, Yonar A, Hallacy T, Shen CH, Milloz J, Srinivasan J, Kocabas A, Ramanathan S. A compressed sensing framework for efficient dissection of neural circuits. Nature Methods. 16: 126-133. PMID 30573831 DOI: 10.1038/S41592-018-0233-6  0.717
2017 Furchtgott LA, Melton S, Menon V, Ramanathan S. Discovering sparse transcription factor codes for cell states and state transitions during development. Elife. 6. PMID 28296636 DOI: 10.7554/Elife.20488  0.781
2017 Jang S, Choubey S, Furchtgott L, Zou LN, Doyle A, Menon V, Loew EB, Krostag AR, Martinez RA, Madisen L, Levi BP, Ramanathan S. Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. Elife. 6. PMID 28296635 DOI: 10.7554/Elife.20487  0.767
2017 Close JL, Yao Z, Levi BP, Miller JA, Bakken TE, Menon V, Ting JT, Wall A, Krostag AR, Thomsen ER, Nelson AM, Mich JK, Hodge RD, Shehata SI, Glass IA, ... ... Ramanathan S, et al. Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation. Neuron. 93: 1035-1048.e5. PMID 28279351 DOI: 10.1016/J.Neuron.2017.02.014  0.414
2017 Yao Z, Mich JK, Ku S, Menon V, Krostag AR, Martinez RA, Furchtgott L, Mulholland H, Bort S, Fuqua MA, Gregor BW, Hodge RD, Jayabalu A, May RC, Melton S, ... ... Ramanathan S, et al. A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development. Cell Stem Cell. 20: 120-134. PMID 28094016 DOI: 10.1016/J.Stem.2016.09.011  0.795
2016 Furchtgott LA, Melton S, Menon V, Ramanathan S. Author response: Discovering sparse transcription factor codes for cell states and state transitions during development Elife. DOI: 10.7554/Elife.20488.034  0.768
2015 Thomsen ER, Mich JK, Yao Z, Hodge RD, Doyle AM, Jang S, Shehata SI, Nelson AM, Shapovalova NV, Levi BP, Ramanathan S. Fixed single-cell transcriptomic characterization of human radial glial diversity. Nature Methods. PMID 26524239 DOI: 10.1038/Nmeth.3629  0.782
2012 Kocabas A, Shen CH, Guo ZV, Ramanathan S. Controlling interneuron activity in Caenorhabditis elegans to evoke chemotactic behaviour. Nature. 490: 273-7. PMID 23000898 DOI: 10.1038/Nature11431  0.763
2011 Thomson M, Liu SJ, Zou LN, Smith Z, Meissner A, Ramanathan S. Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell. 145: 875-89. PMID 21663792 DOI: 10.1016/J.Cell.2011.05.017  0.786
2011 McClean MN, Hersen P, Ramanathan S. Measuring in vivo signaling kinetics in a mitogen-activated kinase pathway using dynamic input stimulation. Methods in Molecular Biology (Clifton, N.J.). 734: 101-19. PMID 21468987 DOI: 10.1007/978-1-61779-086-7_6  0.78
2009 Guo ZV, Hart AC, Ramanathan S. Optical interrogation of neural circuits in Caenorhabditis elegans. Nature Methods. 6: 891-6. PMID 19898486 DOI: 10.1038/Nmeth.1397  0.51
2009 Mody A, Weiner J, Ramanathan S. Modularity of MAP kinases allows deformation of their signalling pathways. Nature Cell Biology. 11: 484-91. PMID 19295513 DOI: 10.1038/Ncb1856  0.762
2009 McClean MN, Hersen P, Ramanathan S. In vivo measurement of signaling cascade dynamics. Cell Cycle (Georgetown, Tex.). 8: 373-6. PMID 19177008 DOI: 10.4161/Cc.8.3.7450  0.788
2008 Hersen P, McClean M, Ramanathan S. [Dynamic analysis of cell signalling: the example of the Saccharomyces cerevisiae osmotic response]. MéDecine Sciences : M/S. 24: 1020-2. PMID 19116106 DOI: 10.1051/Medsci/200824121020  0.785
2008 Hersen P, McClean MN, Mahadevan L, Ramanathan S. Signal processing by the HOG MAP kinase pathway. Proceedings of the National Academy of Sciences of the United States of America. 105: 7165-70. PMID 18480263 DOI: 10.1073/Pnas.0710770105  0.78
2008 Nachman I, Ramanathan S. HIV-1 positive feedback and lytic fate. Nature Genetics. 40: 382-3. PMID 18368125 DOI: 10.1038/Ng0408-382  0.709
2007 Hallatschek O, Hersen P, Ramanathan S, Nelson DR. Genetic drift at expanding frontiers promotes gene segregation. Proceedings of the National Academy of Sciences of the United States of America. 104: 19926-30. PMID 18056799 DOI: 10.1073/Pnas.0710150104  0.732
2007 Nachman I, Regev A, Ramanathan S. Dissecting timing variability in yeast meiosis. Cell. 131: 544-56. PMID 17981121 DOI: 10.1016/J.Cell.2007.09.044  0.742
2007 Ramanathan S, Broach JR. Do cells think? Cellular and Molecular Life Sciences. 64: 1801-1804. PMID 17530173 DOI: 10.1007/S00018-007-7001-6  0.357
2007 McClean MN, Mody A, Broach JR, Ramanathan S. Cross-talk and decision making in MAP kinase pathways. Nature Genetics. 39: 409-14. PMID 17259986 DOI: 10.1038/Ng1957  0.778
2007 McClean MN, Mody A, Broach JR, Ramanathan S. Erratum: Corrigendum: Cross-talk and decision making in MAP kinase pathways Nature Genetics. 39: 567-567. DOI: 10.1038/Ng0407-567B  0.733
2005 Ramanathan S, Swain PS. Tracing the sources of cellular variation. Developmental Cell. 9: 576-8. PMID 16256732 DOI: 10.1016/J.Devcel.2005.10.004  0.338
2005 Ramanathan S, Detwiler PB, Sengupta AM, Shraiman BI. G-protein-coupled enzyme cascades have intrinsic properties that improve signal localization and fidelity. Biophysical Journal. 88: 3063-71. PMID 15681646 DOI: 10.1529/Biophysj.103.039321  0.343
2002 Bouchaud E, Bouchaud JP, Fisher DS, Ramanathan S, Rice JR. Can crack front waves explain the roughness of cracks? Journal of the Mechanics and Physics of Solids. 50: 1703-1725. DOI: 10.1016/S0022-5096(01)00137-5  0.453
2000 Detwiler PB, Ramanathan S, Sengupta A, Shraiman BI. Engineering aspects of enzymatic signal transduction: photoreceptors in the retina. Biophysical Journal. 79: 2801-17. PMID 11106590 DOI: 10.1016/S0006-3495(00)76519-2  0.305
1998 Ramanathan S, Fisher DS. Onset of propagation of planar cracks in heterogeneous media Physical Review B - Condensed Matter and Materials Physics. 58: 6026-6046. DOI: 10.1103/Physrevb.58.6026  0.462
1997 Ramanathan S, Fisher DS. Dynamics and instabilities of planar tensile cracks in heterogeneous media Physical Review Letters. 79: 877-880. DOI: 10.1103/Physrevlett.79.877  0.449
1997 Ramanathan S, Ertaş D, Fisher DS. Quasistatic crack propagation in heterogeneous media Physical Review Letters. 79: 873-876. DOI: 10.1103/Physrevlett.79.873  0.445
1997 Fisher DS, Dahmen K, Ramanathan S, Ben-Zion Y. Statistics of earthquakes in simple models of heterogeneous faults Physical Review Letters. 78: 4885-4888. DOI: 10.1103/Physrevlett.78.4885  0.464
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