Valery V. Andrushchenko, Ph.D. - Publications

Affiliations: 
2001 University of Calgary, Calgary, Alberta, Canada 
Area:
General Biophysics

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kaminský J, Andrushchenko V, Bouř P. Natural and magnetic circular dichroism spectra of nucleosides: effect of the dynamics and environment. Rsc Advances. 11: 8411-8419. PMID 35423314 DOI: 10.1039/d1ra00076d  0.347
2020 Kovač I, Jakl M, Fanfrlík J, Andrushchenko V, Dytrtová JJ. Complexation and stability of the fungicide penconazole in the presence of zinc and copper ions. Rapid Communications in Mass Spectrometry. 34. PMID 31880851 DOI: 10.1002/Rcm.8714  0.34
2019 Westphal KR, Werner MIH, Nielsen KAH, Sørensen JL, Andrushchenko V, Winde J, Hertz M, Jensen MA, Mortensen ML, Bouř P, Sondergaard TE, Wimmer R. Characterization of Eight Novel Spiroleptosphols from . Molecules (Basel, Switzerland). 24. PMID 31561557 DOI: 10.3390/Molecules24193498  0.34
2019 Andrushchenko V, Pohle W. Influence of the hydrophobic domain on the self-assembly and hydrogen bonding of hydroxy-amphiphiles. Physical Chemistry Chemical Physics. 21: 11242-11258. PMID 31099371 DOI: 10.1039/C9Cp01475F  0.335
2019 Andrushchenko V. Eu as a luminescence probe in DNA studies: Structural and conformational implications. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 213: 456-462. PMID 30738352 DOI: 10.1016/j.saa.2019.01.088  0.441
2019 Wu T, Bouř P, Andrushchenko V. Europium (III) as a Circularly Polarized Luminescence Probe of DNA Structure. Scientific Reports. 9: 1068. PMID 30705327 DOI: 10.1038/S41598-018-37680-7  0.491
2018 Lizio MG, Andrushchenko V, Pike SJ, Peters AD, Whitehead GFS, Vitórica-Yrezábal IJ, Mutter ST, Clayden J, Bouř P, Blanch EW, Webb SJ. Optically-Active Vibrational Spectroscopy of α-Aminoisobutyric Acid Foldamers in Organic Solvents and Phospholipid Bilayers. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 29745985 DOI: 10.1002/Chem.201801121  0.446
2018 Kessler J, Andrushchenko V, Kapitán J, Bouř P. Insight into vibrational circular dichroism of proteins by density functional modeling. Physical Chemistry Chemical Physics : Pccp. PMID 29384537 DOI: 10.1039/C7Cp08016F  0.449
2017 Wu T, Kapitan J, Andrushchenko V, Bour P. Identification of Lanthanide (III) Luminophores in Magnetic Circularly Polarized Luminescence using Raman Optical Activity Instrumentation. Analytical Chemistry. PMID 28388031 DOI: 10.1021/Acs.Analchem.7B00435  0.357
2015 Andrushchenko V, Benda L, Páv O, Dračínský M, Bouř P. Vibrational Properties of the Phosphate Group Investigated by Molecular Dynamics and Density Functional Theory. Journal of Physical Chemistry B. 119: 10682-10692. PMID 26193890 DOI: 10.1021/Acs.Jpcb.5B05124  0.48
2015 Sorokin VA, Usenko EL, Valeev VA, Berezniak EG, Andrushchenko VV. Interaction of Zn2+ Ions with Single-Stranded PolyU and PolyC in Neutral Solutions Journal of Physical Chemistry B. 119: 4409-4416. PMID 25731666 DOI: 10.1021/Acs.Jpcb.5B00558  0.392
2014 Sorokin VA, Valeev VA, Usenko EL, Andrushchenko VV. Metallization of single-stranded polyI by Zn(2+) ions in neutral solutions. The Journal of Physical Chemistry. B. 118: 12360-5. PMID 25280235 DOI: 10.1021/Jp5065903  0.37
2014 Andrushchenko V, Padula D, Zhivotova E, Yamamoto S, Bou? P. Magnetic circular dichroism of porphyrin lanthanide M3+ complexes. Chirality. 26: 655-62. PMID 25116761 DOI: 10.1002/Chir.22365  0.393
2013 Sorokin VA, Valeev VA, Usenko EL, Andrushchenko VV. Effect of Zn2+ and temperature on the conformational equilibrium of single-stranded polyA in neutral solutions. International Journal of Biological Macromolecules. 61: 448-452. PMID 23973511 DOI: 10.1016/J.Ijbiomac.2013.08.010  0.356
2013 Štěpánek P, Straka M, Andrushchenko V, Bouř P. Communication: Fullerene resolution by the magnetic circular dichroism Journal of Chemical Physics. 138: 151103-151103. PMID 23614405 DOI: 10.1063/1.4802763  0.371
2013 Li X, Hopmann KH, Hudecová J, Isaksson J, Novotná J, Stensen W, Andrushchenko V, Urbanová M, Svendsen JS, Bouř P, Ruud K. Determination of absolute configuration and conformation of a cyclic dipeptide by NMR and chiral spectroscopic methods. The Journal of Physical Chemistry. A. 117: 1721-36. PMID 23347158 DOI: 10.1021/Jp311151H  0.407
2013 Sorokin VA, Valeev VA, Usenko EL, Rakovsky YP, Andrushchenko VV. Specific features of Zn2+, Co2+ and Ni2+ ion binding to DNA in alkaline solutions International Journal of Biological Macromolecules. 55: 137-141. PMID 23313824 DOI: 10.1016/J.Ijbiomac.2013.01.001  0.465
2012 Štěpánek P, Andrushchenko V, Ruud K, Bouř P. Porphyrin protonation studied by magnetic circular dichroism. The Journal of Physical Chemistry. A. 116: 778-83. PMID 22142396 DOI: 10.1021/Jp2105192  0.44
2012 Sorokin VA, Valeev VA, Usenko EL, Andrushchenko VV. DNA conformational equilibrium in the presence of Zn2+ ions in neutral and alkaline solutions International Journal of Biological Macromolecules. 50: 854-860. PMID 22119960 DOI: 10.1016/J.Ijbiomac.2011.11.011  0.467
2011 Andrushchenko V, Tsankov D, Krasteva M, Wieser H, Bour P. Spectroscopic detection of DNA quadruplexes by vibrational circular dichroism. Journal of the American Chemical Society. 133: 15055-64. PMID 21823674 DOI: 10.1021/Ja204630K  0.725
2011 Sorokin VA, Valeev VA, Usenko EL, Andrushchenko VV. Divalent metal ion effect on helix-coil transition of high molecular weight DNA in neutral and alkaline solutions International Journal of Biological Macromolecules. 48: 369-374. PMID 21215771 DOI: 10.1016/J.Ijbiomac.2010.12.016  0.389
2010 Andrushchenko V, Bouř P. Applications of the Cartesian coordinate tensor transfer technique in the simulations of vibrational circular dichroism spectra of oligonucleotides Chirality. 22. PMID 21038400 DOI: 10.1002/Chir.20872  0.502
2010 Gauger DR, Andrushchenko VV, Bouř P, Pohle W. A spectroscopic method to estimate the binding potency of amphiphile assemblies Analytical and Bioanalytical Chemistry. 398: 1109-1123. PMID 20635078 DOI: 10.1007/S00216-010-3969-0  0.328
2009 Andrushchenko V, Matějka P, Anderson DT, Kaminský J, Horníček J, Paulson LO, Bouř P. Solvent Dependence of the N-Methylacetamide Structure and Force Field Journal of Physical Chemistry A. 113: 9727-9736. PMID 19663410 DOI: 10.1021/Jp9045512  0.43
2009 Andrushchenko V, Bour P. Infrared absorption detection of metal ion-deoxyguanosine monophosphate binding: experimental and theoretical study. Journal of Physical Chemistry B. 113: 283-291. PMID 19063657 DOI: 10.1021/Jp8058678  0.47
2008 Andrushchenko V, Bour P. Circular dichroism enhancement in large DNA aggregates simulated by a generalized oscillator model. Journal of Computational Chemistry. 29: 2693-2703. PMID 18484631 DOI: 10.1002/Jcc.21015  0.413
2007 Andrushchenko V, Wieser H, Bour P. DNA oligonucleotide-cis-platin binding: Ab initio interpretation of the vibrational spectra. Journal of Physical Chemistry A. 111: 9714-9723. PMID 17784739 DOI: 10.1021/Jp074572I  0.662
2007 Bour P, Andrushchenko V, Kabelác M, Maharaj V, Wieser H. Simulations of structure and vibrational spectra of deoxyoctanucleotides. The Journal of Physical Chemistry. B. 109: 20579-87. PMID 16853664 DOI: 10.1021/JP051218G  0.599
2006 Andrushchenko VV, Vogel HJ, Prenner EJ. Solvent-dependent structure of two tryptophan-rich antimicrobial peptides and their analogs studied by FTIR and CD spectroscopy. Biochimica Et Biophysica Acta. 1758: 1596-608. PMID 16956577 DOI: 10.1016/J.Bbamem.2006.07.013  0.312
2006 Polyanichko AM, Chikhirzhina EV, Andrushchenko VV, Vorob'ev VI, Wieser H. The effect of manganese(II) on the structure of DNA/HMGB1/H1 complexes: electronic and vibrational circular dichroism studies. Biopolymers. 83: 182-92. PMID 16732569 DOI: 10.1002/Bip.20544  0.643
2006 Pandyra A, Tsankov D, Andrushchenko V, van de Sande JH, Wieser H. Intercalation of daunomycin into d(CG)4 oligomer duplex containing G x T mismatches by vibrational circular dichroism and infrared absorption spectroscopy. Biopolymers. 82: 189-98. PMID 16312022 DOI: 10.1002/Bip.20416  0.616
2006 Tsankov D, Krasteva M, Andrushchenko V, van de Sande JH, Wieser H. Vibrational circular dichroism signature of hemiprotonated intercalated four-stranded i-DNA. Biophysical Chemistry. 119: 1-6. PMID 16183193 DOI: 10.1016/J.Bpc.2005.08.004  0.723
2005 Pandyra AA, Yamniuk AP, Andrushchenko VV, Wieser H, Vogel HJ. Isotope-labeled vibrational circular dichroism studies of calmodulin and its interactions with ligands. Biopolymers. 79: 231-7. PMID 16013055 DOI: 10.1002/Bip.20339  0.562
2004 Polianichko AM, Chikhirzhina EV, Andrushchenko VV, Kostyleva EI, Wieser H, Vorob'ev VI. [The effect of Ca2+ ions on DNA compaction in the complex with non-histone chromosomal protein HMGB1]. Molekuliarnaia Biologiia. 38: 701-12. PMID 15456142  0.572
2004 Polyanichko AM, Andrushchenko VV, Chikhirzhina EV, Vorob'ev VI, Wieser H. The effect of manganese(II) on DNA structure: electronic and vibrational circular dichroism studies. Nucleic Acids Research. 32: 989-96. PMID 14872058 DOI: 10.1093/Nar/Gkh242  0.632
2004 Polyanichko AM, Chikhirzhina EV, Andrushchenko VV, Kostyleva EI, Wieser H, Vorob'ev VI. The Effect of Ca2+Ions on DNA Compaction in the Complex with HMGB1 Nonhistone Chromosomal Protein Molecular Biology. 38: 590-600. DOI: 10.1023/B:Mbil.0000037012.46944.B1  0.602
2004 Andrushchenko V, Wieser aH, Bouř P. RNA Structural Forms Studied by Vibrational Circular Dichroism: Ab Initio Interpretation of the Spectra Journal of Physical Chemistry B. 108: 3899-3911. DOI: 10.1021/Jp037106B  0.435
2003 Andrushchenko V, van de Sande JH, Wieser H. Vibrational circular dichroism and IR absorption of DNA complexes with Cu2+ ions. Biopolymers. 72: 374-90. PMID 12949828 DOI: 10.1002/Bip.10439  0.584
2003 Andrushchenko V, Sande Hvd, Wieser H. DNA interaction with Mn2+ ions at elevated temperatures: VCD evidence of DNA aggregation. Biopolymers. 69: 529-545. PMID 12879498 DOI: 10.1002/Bip.10419  0.61
2003 Andrushchenko V, Tsankov D, Wieser H. Vibrational circular dichroism spectroscopy and the effects of metal ions on DNA structure Journal of Molecular Structure. 661: 541-560. DOI: 10.1016/J.Molstruc.2003.08.037  0.644
2002 Andrushchenko V, Leonenko Z, Cramb D, van de Sande H, Wieser H. Vibrational CD (VCD) and atomic force microscopy (AFM) study of DNA interaction with Cr3+ ions: VCD and AFM evidence of DNA condensation. Biopolymers. 61: 243-60. PMID 12115140 DOI: 10.1002/Bip.10159  0.646
2002 Andrushchenko V, Blagoi Y, van de Sande JH, Wieser H. Poly(rA).poly(rU) with Ni(2+) ions at different temperatures: infrared absorption and vibrational circular dichroism spectroscopy. Journal of Biomolecular Structure & Dynamics. 19: 889-906. PMID 11922843 DOI: 10.1080/07391102.2002.10506792  0.567
2002 Andrushchenko V, Wieser aH, Bouř P. B−Z Conformational Transition of DNA Monitored by Vibrational Circular Dichroism. Ab Initio Interpretation of the Experiment Journal of Physical Chemistry B. 106: 12623-12634. DOI: 10.1021/Jp0262721  0.507
2000 Andrushchenko V, McCann J, van de Sande J, Wieser H. Determining structures of polymeric molecules by vibrational circular dichroism (VCD) spectroscopy Vibrational Spectroscopy. 22: 101-109. DOI: 10.1016/S0924-2031(99)00062-4  0.597
1999 Andrushchenko VV, van de Sande JH, Wieser H, Kornilova SV, Blagoi YP. Complexes of (dG-dC)20 with Mn2+ ions: a study by vibrational circular dichroism and infrared absorption spectroscopy. Journal of Biomolecular Structure & Dynamics. 17: 545-60. PMID 10636089 DOI: 10.1080/07391102.1999.10508385  0.596
1999 Andrushchenko V, van de Sande J, Wieser H. Interaction of deoxyribo-oligonucleotides with divalent manganese ions: comparison of vibrational circular dichroism and absorption spectroscopy Vibrational Spectroscopy. 19: 341-345. DOI: 10.1016/S0924-2031(99)00009-0  0.641
1998 Kornilova S, Hackl E, Kapinos L, Andrushchenko V, Blagoi Y. Dna Interaction With Biologically Active Metal Ions. Cooperativity Of Metal Ion Binding At Compacting Of Dna Acta Biochimica Polonica. 45: 107-117. DOI: 10.18388/Abp.1998_4325  0.433
1997 Andrushchenko VV, Kornilova SV, Kapinos LE, Hackl EV, Galkin VL, Grigoriev DN, Blagoi YP. IR-spectroscopic studies of divalent metal ion effects on DNA hydration Journal of Molecular Structure. 408409: 225-228. DOI: 10.1016/S0022-2860(96)09672-X  0.473
1997 Kornilova SV, Miskovsky P, Tomkova A, Kapinos LE, Hackl EV, Andrushchenko VV, Grigoriev DN, Blagoi YP. Vibrational spectroscopic studies of the divalent metal ion effect on DNA structural transitions Journal of Molecular Structure. 219-223. DOI: 10.1016/S0022-2860(96)09671-8  0.5
1997 Hackl EV, Kornilova SV, Kapinos LE, Andrushchenko VV, Galkin VL, Grigoriev DN, Blagoi YP. Study of Ca2+, Mn2+ and Cu2+ binding to DNA in solution by means of IR spectroscopy Journal of Molecular Structure. 229-232. DOI: 10.1016/S0022-2860(96)09534-8  0.441
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