Year |
Citation |
Score |
2018 |
Hussey BJ, McMillen DR. Programmable T7-based synthetic transcription factors. Nucleic Acids Research. PMID 30169636 DOI: 10.1093/Nar/Gky785 |
0.331 |
|
2016 |
Harris EA, Buzina A, Moffat J, McMillen DR. Design and experimental validation of small activating RNAs targeting an exogenous promoter in human cells. Acs Synthetic Biology. PMID 28033709 DOI: 10.1021/Acssynbio.6B00125 |
0.304 |
|
2016 |
Tang ZF, McMillen DR. Design principles for the analysis and construction of robustly homeostatic biological networks. Journal of Theoretical Biology. PMID 27378006 DOI: 10.1016/J.Jtbi.2016.06.036 |
0.451 |
|
2016 |
Harris EA, Koh EJ, Moffat J, McMillen DR. Automated inference procedure for the determination of cell growth parameters. Physical Review. E. 93: 012402. PMID 26871096 DOI: 10.1103/Physreve.93.012402 |
0.309 |
|
2015 |
Mazumder M, Brechun KE, Kim YB, Hoffmann SA, Chen YY, Keiski CL, Arndt KM, McMillen DR, Woolley GA. An Escherichia coli system for evolving improved light-controlled DNA-binding proteins. Protein Engineering, Design & Selection : Peds. 28: 293-302. PMID 26245690 DOI: 10.1093/Protein/Gzv033 |
0.618 |
|
2014 |
Mazumder M, McMillen DR. Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast. Nucleic Acids Research. 42: 9514-22. PMID 25056312 DOI: 10.1093/Nar/Gku651 |
0.685 |
|
2013 |
Ang J, Harris E, Hussey BJ, Kil R, McMillen DR. Tuning response curves for synthetic biology. Acs Synthetic Biology. 2: 547-67. PMID 23905721 DOI: 10.1021/Sb4000564 |
0.727 |
|
2013 |
Ang J, McMillen DR. Physical constraints on biological integral control design for homeostasis and sensory adaptation. Biophysical Journal. 104: 505-15. PMID 23442873 DOI: 10.1016/J.Bpj.2012.12.015 |
0.735 |
|
2011 |
Ang J, Ingalls B, McMillen D. Probing the input-output behavior of biochemical and genetic systems system identification methods from control theory. Methods in Enzymology. 487: 279-317. PMID 21187229 DOI: 10.1016/B978-0-12-381270-4.00010-X |
0.732 |
|
2011 |
Bagh S, Mandal M, Ang J, McMillen DR. An active intracellular device to prevent lethal disease outcomes in virus-infected bacterial cells. Biotechnology and Bioengineering. 108: 645-54. PMID 20967799 DOI: 10.1002/Bit.22969 |
0.695 |
|
2010 |
Bagh S, Mandal M, McMillen DR. Minimal genetic device with multiple tunable functions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 021911. PMID 20866841 DOI: 10.1103/Physreve.82.021911 |
0.395 |
|
2010 |
Ang J, Bagh S, Ingalls BP, McMillen DR. Considerations for using integral feedback control to construct a perfectly adapting synthetic gene network. Journal of Theoretical Biology. 266: 723-38. PMID 20688080 DOI: 10.1016/J.Jtbi.2010.07.034 |
0.729 |
|
2009 |
Bagh S, McMillen DR. A synthetic genetic circuit whose signal-response curve is temperature-tunable from band-detection to sigmoidal behaviour Natural Computing. 9: 991-1006. DOI: 10.1007/S11047-009-9167-3 |
0.386 |
|
2008 |
Iafolla MA, Dong GQ, McMillen DR. Increasing the efficiency of bacterial transcription simulations: when to exclude the genome without loss of accuracy. Bmc Bioinformatics. 9: 373. PMID 18789148 DOI: 10.1186/1471-2105-9-373 |
0.316 |
|
2008 |
Bagh S, Mazumder M, Velauthapillai T, Sardana V, Dong GQ, Movva AB, Lim LH, McMillen DR. Plasmid-borne prokaryotic gene expression: sources of variability and quantitative system characterization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 021919. PMID 18352063 DOI: 10.1103/Physreve.77.021919 |
0.67 |
|
2008 |
Dong GQ, McMillen DR. Effects of protein maturation on the noise in gene expression. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 021908. PMID 18352052 DOI: 10.1103/Physreve.77.021908 |
0.34 |
|
2008 |
Iafolla MA, Mazumder M, Sardana V, Velauthapillai T, Pannu K, McMillen DR. Dark proteins: effect of inclusion body formation on quantification of protein expression. Proteins. 72: 1233-42. PMID 18350571 DOI: 10.1002/Prot.22024 |
0.645 |
|
2007 |
Dong GQ, Jakobowski L, Iafolla MA, McMillen DR. Simplification of stochastic chemical reaction models with fast and slow dynamics. Journal of Biological Physics. 33: 67-95. PMID 19669554 DOI: 10.1007/S10867-007-9043-2 |
0.376 |
|
2006 |
Dong CG, Jakobowski L, McMillen DR. Systematic reduction of a stochastic signalling cascade model. Journal of Biological Physics. 32: 173-6. PMID 19669460 DOI: 10.1007/S10867-006-9005-0 |
0.365 |
|
2006 |
Iafolla MA, McMillen DR. Extracting biochemical parameters for cellular modeling: A mean-field approach. The Journal of Physical Chemistry. B. 110: 22019-28. PMID 17064172 DOI: 10.1021/Jp062739M |
0.337 |
|
2006 |
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR, Elston TC, Collins JJ. A bottom-up approach to gene regulation. Nature. 439: 856-60. PMID 16482159 DOI: 10.1038/Nature04473 |
0.431 |
|
2004 |
Adalsteinsson D, McMillen D, Elston TC. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks. Bmc Bioinformatics. 5: 24. PMID 15113411 DOI: 10.1186/1471-2105-5-24 |
0.379 |
|
2003 |
McMillen D, Kopell N. Noise-stabilized long-distance synchronization in populations of model neurons. Journal of Computational Neuroscience. 15: 143-57. PMID 14512745 DOI: 10.1023/A:1025860724292 |
0.325 |
|
2002 |
Hasty J, McMillen D, Collins JJ. Engineered gene circuits. Nature. 420: 224-30. PMID 12432407 DOI: 10.1038/Nature01257 |
0.437 |
|
2002 |
McMillen D, Kopell N, Hasty J, Collins JJ. Synchronizing genetic relaxation oscillators by intercell signaling. Proceedings of the National Academy of Sciences of the United States of America. 99: 679-84. PMID 11805323 DOI: 10.1073/Pnas.022642299 |
0.398 |
|
2001 |
Hasty J, Isaacs F, Dolnik M, McMillen D, Collins JJ. Designer gene networks: Towards fundamental cellular control. Chaos (Woodbury, N.Y.). 11: 207-220. PMID 12779454 DOI: 10.1063/1.1345702 |
0.455 |
|
2001 |
Hasty J, McMillen D, Isaacs F, Collins JJ. Computational studies of gene regulatory networks: in numero molecular biology. Nature Reviews. Genetics. 2: 268-79. PMID 11283699 DOI: 10.1038/35066056 |
0.374 |
|
1999 |
McMillen DR, D'Eleuterio GM, Halperin JR. Simple central pattern generator model using phasic analog neurons. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 59: 6994-9. PMID 11969687 DOI: 10.1103/Physreve.59.6994 |
0.66 |
|
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