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Pieter G. Bolhuis - Publications

Affiliations: 
University of Amsterdam, Amsterdam, Netherlands 
Area:
Computational Chemistry
Website:
http://www.science.uva.nl/hims/object.cfm/002F4258-C547-462C-A66F32987C800031

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Rodenburg J, Paliwal S, de Jager M, Bolhuis PG, Dijkstra M, van Roij R. Ratchet-induced variations in bulk states of an active ideal gas. The Journal of Chemical Physics. 149: 174910. PMID 30408988 DOI: 10.1063/1.5048698  0.431
2016 Angulo G, Astumian RD, Beniwal V, Bolhuis PG, Dellago C, Ellis J, Ensing B, Glowacki DR, Hammes-Schiffer S, Kästner J, Lelièvre T, Makri N, Manolopoulos D, Menzl G, Miller TF, et al. New methods: general discussion. Faraday Discussions. PMID 27929586 DOI: 10.1039/C6Fd90075E  0.562
2016 Althorpe S, Angulo G, Astumian RD, Beniwal V, Bolhuis PG, Brandão J, Ellis J, Fang W, Glowacki DR, Hammes-Schiffer S, Hele TJ, Jónsson H, Lelièvre T, Makri N, Manolopoulos D, et al. Application to large systems: general discussion. Faraday Discussions. PMID 27929584 DOI: 10.1039/C6Fd90076C  0.385
2016 Kumar A, Lowe CP, Cohen Stuart MA, Bolhuis PG. Trigger sequence can influence final morphology in the self-assembly of asymmetric telechelic polymers. Soft Matter. PMID 26754000 DOI: 10.1039/c5sm01453k  0.466
2015 Ni R, Kleijn JM, Abeln S, Cohen Stuart MA, Bolhuis PG. Competition between surface adsorption and folding of fibril-forming polypeptides. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 022711. PMID 25768535 DOI: 10.1103/Physreve.91.022711  0.588
2015 Ni R, Cohen Stuart MA, Bolhuis PG. Tunable long range forces mediated by self-propelled colloidal hard spheres. Physical Review Letters. 114: 018302. PMID 25615510 DOI: 10.1103/Physrevlett.114.018302  0.604
2015 Bolhuis PG, Dellago C. Practical and conceptual path sampling issues European Physical Journal: Special Topics. DOI: 10.1140/Epjst/E2015-02419-6  0.56
2014 Ni R, Cohen Stuart MA, Dijkstra M, Bolhuis PG. Crystallizing hard-sphere glasses by doping with active particles. Soft Matter. 10: 6609-13. PMID 25079244 DOI: 10.1039/C4Sm01015A  0.663
2013 Ni R, Abeln S, Schor M, Cohen Stuart MA, Bolhuis PG. Interplay between folding and assembly of fibril-forming polypeptides. Physical Review Letters. 111: 058101. PMID 23952447 DOI: 10.1103/Physrevlett.111.058101  0.592
2013 Zhu L, Bolhuis PG, Vreede J. The HAMP Signal Relay Domain Adopts Multiple Conformational States through Collective Piston and Tilt Motions Plos Computational Biology. 9. PMID 23468603 DOI: 10.1371/Journal.Pcbi.1002913  0.729
2011 Lechner W, Dellago C, Bolhuis PG. Reaction coordinates for the crystal nucleation of colloidal suspensions extracted from the reweighted path ensemble. The Journal of Chemical Physics. 135: 154110. PMID 22029300 DOI: 10.1063/1.3651367  0.517
2011 Zhu L, Frenkel D, Bolhuis PG. Role of fluctuations in ligand binding cooperativity of membrane receptors. Physical Review Letters. 106: 168103. PMID 21599417 DOI: 10.1103/Physrevlett.106.168103  0.732
2011 Lechner W, Dellago C, Bolhuis PG. Role of the prestructured surface cloud in crystal nucleation. Physical Review Letters. 106: 085701. PMID 21405585 DOI: 10.1103/Physrevlett.106.085701  0.51
2011 Lechner W, Dellago C, Bolhuis PG. Role of the prestructured surface cloud in crystal nucleation Physical Review Letters. 106. DOI: 10.1103/PhysRevLett.106.085701  0.452
2011 Zhu L, Bolhuis PG, Vreede J. Exploring Signal Transduction Mechanism of HAMP Domains via Molecular Dynamics and Metadynamics Biophysical Journal. 100: 195a. DOI: 10.1016/J.Bpj.2010.12.1281  0.725
2010 Zhu L, Bolhuis P, Vreede J. Molecular Dynamics Simulation Study of Isolated Hamp Domain Biophysical Journal. 98: 26a. DOI: 10.1016/J.Bpj.2009.12.155  0.727
2010 Bolhuis PG, Dellago C. Trajectory-based rare event simulations Reviews in Computational Chemistry. 27: 111-210. DOI: 10.1002/9780470890905.ch3  0.471
2009 Schor M, Martens AA, Dewolf FA, Cohen Stuart MA, Bolhuis PG. Prediction of solvent dependent β-roll formation of a self-assembling silk-like protein domain Soft Matter. 5: 2658-2665. DOI: 10.1039/b902952d  0.448
2009 Dellago C, Bolhuis PG. Transition path sampling and other advanced simulation techniques for rare events Advances in Polymer Science. 221: 167-233. DOI: 10.1007/978-3-540-87706-6_3  0.548
2008 Leenders EJ, Bolhuis PG, Meijer EJ. Microscopic Picture of the Aqueous Solvation of Glutamic Acid. Journal of Chemical Theory and Computation. 4: 898-907. PMID 26621231 DOI: 10.1021/ct700344f  0.454
2008 Fortini A, Bolhuis PG, Dijkstra M. Effect of excluded volume interactions on the interfacial properties of colloid-polymer mixtures. The Journal of Chemical Physics. 128: 024904. PMID 18205472 DOI: 10.1063/1.2818562  0.444
2008 Fortini A, Bolhuis PG, Dijkstra M. Effect of excluded volume interactions on the interfacial properties of colloid-polymer mixtures Journal of Chemical Physics. 128. DOI: 10.1063/1.2818562  0.422
2008 Leenders EJM, Bolhuis PG, Meijer EJ. Microscopic picture of the aqueous solvation of glutamic acid Journal of Chemical Theory and Computation. 4: 898-907. DOI: 10.1021/ct700344f  0.399
2007 Leenders EJ, VandeVondele J, Bolhuis PG, Meijer EJ. Solvation of p-coumaric acid in water. The Journal of Physical Chemistry. B. 111: 13591-9. PMID 17994725 DOI: 10.1021/jp075341e  0.482
2007 Leenders EJ, Guidoni L, Röthlisberger U, Vreede J, Bolhuis PG, Meijer EJ. Protonation of the chromophore in the photoactive yellow protein. The Journal of Physical Chemistry. B. 111: 3765-73. PMID 17388542 DOI: 10.1021/Jp067158B  0.493
2007 Leenders EJM, Vandevondele J, Bolhuis PG, Meijer EJ. Solvation of p-coumaric acid in water Journal of Physical Chemistry B. 111: 13591-13599. DOI: 10.1021/jp075341e  0.402
2007 Leenders EJM, Guidoni L, Röthlisberger U, Vreede J, Bolhuis PG, Meijer EJ. Protonation of the chromophore in the photoactive yellow protein Journal of Physical Chemistry B. 111: 3765-3773. DOI: 10.1021/jp067158b  0.428
2006 Tambach TJ, Bolhuis PG, Hensen EJ, Smit B. Hysteresis in clay swelling induced by hydrogen bonding: accurate prediction of swelling states. Langmuir : the Acs Journal of Surfaces and Colloids. 22: 1223-34. PMID 16430287 DOI: 10.1021/La051367Q  0.424
2006 Tambach TJ, Bolhuis PG, Hensen EJM, Smit B. Hysteresis in clay swelling induced by hydrogen bonding: Accurate prediction of swelling states Langmuir. 22: 1223-1234. DOI: 10.1021/la051367q  0.361
2006 Dellago C, Bolhuis PG, Geissler PL. Transition path sampling methods Lecture Notes in Physics. 703: 349-391. DOI: 10.1007/3-540-35273-2_10  0.657
2004 Tambach TJ, Bolhuis PG, Smit B. A molecular mechanism of hysteresis in clay swelling. Angewandte Chemie (International Ed. in English). 43: 2650-2. PMID 18629979 DOI: 10.1002/Anie.200353612  0.399
2004 Dellago C, Bolhuis PG. Activation energies from transition path sampling simulations Molecular Simulation. 30: 795-799. DOI: 10.1080/08927020412331294869  0.512
2004 Tambach TJ, Bolhuis PG, Smit B. A molecular mechanism of hysteresis in clay swelling Angewandte Chemie - International Edition. 43: 2650-2652. DOI: 10.1002/anie.200353612  0.369
2003 Bolhuis PG, Meijer EJ, Louis AA. Colloid-polymer mixtures in the protein limit. Physical Review Letters. 90: 068304. PMID 12633336  0.493
2003 Bolhuis PG, Meijer EJ, Louis AA. Colloid-polymer mixtures in the protein limit Physical Review Letters. 90: 068304/1-068304/4.  0.471
2002 Bolhuis PG, Chandler D, Dellago C, Geissler PL. Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annual Review of Physical Chemistry. 53: 291-318. PMID 11972010 DOI: 10.1146/Annurev.Physchem.53.082301.113146  0.713
2002 Louis AA, Bolhuis PG, Meijer EJ, Hansen JP. Polymer induced depletion potentials in polymer-colloid mixtures Journal of Chemical Physics. 117: 1893-1907. DOI: 10.1063/1.1483299  0.461
2002 Louis AA, Bolhuis PG, Meijer EJ, Hansen JP. Density profiles and surface tension of polymers near colloidal surfaces Journal of Chemical Physics. 116: 10547-10556. DOI: 10.1063/1.1473658  0.449
2002 Louis AA, Bolhuis PG, Finken R, Krakoviack V, Meijer EJ, Hansen JP. Coarse-graining polymers as soft colloids Physica a: Statistical Mechanics and Its Applications. 306: 251-261. DOI: 10.1016/S0378-4371(02)00502-2  0.457
2001 Bolhuis PG, Louis AA, Hansen JP, Meijer EJ. Accurate effective pair potentials for polymer solutions Journal of Chemical Physics. 114: 4296-4311. DOI: 10.1063/1.1344606  0.459
2000 Louis AA, Bolhuis PG, Hansen JP, Meijer EJ. Can polymer coils Be modeled as "Soft colloids"? Physical Review Letters. 85: 2522-5. PMID 10978097  0.485
2000 Bolhuis PG, Dellago C, Chandler D. Reaction coordinates of biomolecular isomerization. Proceedings of the National Academy of Sciences of the United States of America. 97: 5877-82. PMID 10801977 DOI: 10.1073/Pnas.100127697  0.602
2000 Bolhuis PG, Dellago C, Geissler PL, Chandler D. Transition path sampling: Throwing ropes over mountains in the dark Journal of Physics Condensed Matter. 12: A139-A145. DOI: 10.1088/0953-8984/12/8A/316  0.716
2000 Bolhuis PG, Chandler D. Transition path sampling of cavitation between molecular scale solvophobic surfaces Journal of Chemical Physics. 113: 8154-8160. DOI: 10.1063/1.1315997  0.461
2000 Louis AA, Bolhuis PG, Hansen JP, Meijer EJ. Can polymer coils be modeled as `soft colloids'? Physical Review Letters. 85: 2522-2525.  0.465
2000 Bolhuis PG, Dellago C, Geissler PL, Chandler D. Transition path sampling: Throwing ropes over mountains in the dark Journal of Physics Condensed Matter. 12: A139-A145.  0.657
1999 Dellago C, Bolhuis PG, Chandler D. On the calculation of reaction rate constants in the transition path ensemble Journal of Chemical Physics. 110: 6617-6625.  0.497
1998 Dellago C, Bolhuis PG, Chandler D. Efficient transition path sampling: Application to Lennard-Jones cluster rearrangements Journal of Chemical Physics. 108: 9236-9245. DOI: 10.1063/1.476378  0.633
1998 Dellago C, Bolhuis PG, Csajka FS, Chandler D. Transition path sampling and the calculation of rate constants Journal of Chemical Physics. 108: 1964-1977. DOI: 10.1063/1.475562  0.632
1998 Bolhuis PG, Dellago C, Chandler D. Sampling ensembles of deterministic transition pathways Faraday Discussions. 110: 421-436.  0.529
1997 Bolhuis P, Frenkel D. Isostructural solid - solid transitions in systems with a repulsive `shoulder' potential Journal of Physics: Condensed Matter. 9: 381-387. DOI: 10.1088/0953-8984/9/2/006  0.569
1997 Bolhuis PG, Stroobants A, Frenkel D, Lekkerkerker HNW. Numerical study of the phase behavior of rodlike colloids with attractive interactions Journal of Chemical Physics. 107: 1551-1564. DOI: 10.1063/1.474508  0.567
1997 Camp PJ, Allen MP, Bolhuis PG, Frenkel D. Demixing in hard ellipsoid rod-plate mixtures Journal of Chemical Physics. 106: 9270-9275. DOI: 10.1063/1.474012  0.528
1997 Bolhuis P, Frenkel D. Tracing the phase boundaries of hard spherocylinders The Journal of Chemical Physics. 106: 666-687. DOI: 10.1063/1.473404  0.511
1997 Bolhuis PG, Frenkel D, Mau S, Huse DA. Entropy difference between crystal phases Nature. 388: 235-236. DOI: 10.1038/40779  0.523
1997 Bolhuis PG, Frenkel D. Microscopic and mesoscopic simulation of entropic micelles Physica a: Statistical Mechanics and Its Applications. 244: 45-58. DOI: 10.1016/S0378-4371(97)00240-9  0.538
1996 Frenkel D, Bladon P, Bolhuis P, Hagen M. Liquid-Like Behavior in Solids Molecular Simulation. 16: 127-137. DOI: 10.1080/08927029608024067  0.559
1996 Frenkel D, Bladon P, Bolhuis P, Hagen M. Liquid-like behavior in colloidal crystals Physica B: Condensed Matter. 228: 33-39. DOI: 10.1016/S0921-4526(96)00332-8  0.56
1994 Bolhuis P, Frenkel D. Numerical study of the phase diagram of a mixture of spherical and rodlike colloids The Journal of Chemical Physics. 101: 9869-9875. DOI: 10.1063/1.467953  0.574
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