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Roberto Bonasio, Ph.D. - Publications

Affiliations: 
2006 Harvard University, Cambridge, MA, United States 
Area:
Immunology, Cell Biology, Molecular Biology
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Castaño D, Wang S, Atencio-Garcia S, Shields EJ, Rico MC, Sharpe H, Bustamante J, Feng A, Le Coz C, Romberg N, Tobias JW, Utz PJ, Henrickson SE, Casanova JL, Bonasio R, et al. IL-12 drives the differentiation of human T follicular regulatory cells. Science Immunology. 9: eadf2047. PMID 38968337 DOI: 10.1126/sciimmunol.adf2047  0.561
2020 Ren W, Medeiros N, Warneford-Thomson R, Wulfridge P, Yan Q, Bian J, Sidoli S, Garcia BA, Skordalakes E, Joyce E, Bonasio R, Sarma K. Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function. Nature Communications. 11: 2219. PMID 32376827 DOI: 10.1038/S41467-020-15902-9  0.379
2020 Beck DB, Petracovici A, He C, Moore HW, Louie RJ, Ansar M, Douzgou S, Sithambaram S, Cottrell T, Santos-Cortez RLP, Prijoles EJ, Bend R, Keren B, Mignot C, Nougues MC, ... ... Bonasio R, et al. Delineation of a Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency. American Journal of Human Genetics. PMID 31928709 DOI: 10.1016/J.Ajhg.2019.12.007  0.302
2019 Escobar TM, Oksuz O, Saldaña-Meyer R, Descostes N, Bonasio R, Reinberg D. Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation during DNA Replication. Cell. 179: 953-963.e11. PMID 31675501 DOI: 10.1016/J.Cell.2019.10.009  0.55
2019 Shields EJ, Petracovici AF, Bonasio R. lncRedibly versatile: biochemical and biological functions of long noncoding RNAs. The Biochemical Journal. 476: 1083-1104. PMID 30971458 DOI: 10.1042/Bcj20180440  0.377
2019 Zhang Q, McKenzie NJ, Warneford-Thomson R, Gail EH, Flanigan SF, Owen BM, Lauman R, Levina V, Garcia BA, Schittenhelm RB, Bonasio R, Davidovich C. RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2. Nature Structural & Molecular Biology. 26: 237-247. PMID 30833789 DOI: 10.1038/S41594-019-0197-Y  0.378
2019 Nicetto D, Donahue G, Jain T, Peng T, Sidoli S, Sheng L, Montavon T, Becker JS, Grindheim JM, Blahnik K, Garcia BA, Tan K, Bonasio R, Jenuwein T, Zaret KS. H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification. Science (New York, N.Y.). PMID 30606806 DOI: 10.1126/Science.Aau0583  0.38
2018 Huang M, Wang J, Torre E, Dueck H, Shaffer S, Bonasio R, Murray JI, Raj A, Li M, Zhang NR. SAVER: gene expression recovery for single-cell RNA sequencing. Nature Methods. PMID 29941873 DOI: 10.1038/S41592-018-0033-Z  0.359
2018 Shields EJ, Sheng L, Weiner AK, Garcia BA, Bonasio R. High-Quality Genome Assemblies Reveal Long Non-coding RNAs Expressed in Ant Brains. Cell Reports. 23: 3078-3090. PMID 29874592 DOI: 10.1016/J.Celrep.2018.05.014  0.329
2018 Choi J, Lee K, Ingvarsdottir K, Bonasio R, Saraf A, Florens L, Washburn MP, Tadros S, Green MR, Busino L. Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2. Nature Cell Biology. 20: 586-596. PMID 29695787 DOI: 10.1038/S41556-018-0084-5  0.319
2018 Torre E, Dueck H, Shaffer S, Gospocic J, Gupte R, Bonasio R, Kim J, Murray J, Raj A. Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH. Cell Systems. PMID 29454938 DOI: 10.1016/J.Cels.2018.01.014  0.368
2017 Warneford-Thomson R, He C, Sidoli S, Garcia BA, Bonasio R. Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions. Journal of Visualized Experiments : Jove. PMID 28994809 DOI: 10.3791/56004  0.349
2017 Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, ... ... Bonasio R, et al. Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nature Genetics. PMID 28825728 DOI: 10.1038/Ng.3937  0.366
2017 Pask GM, Slone JD, Millar JG, Das P, Moreira JA, Zhou X, Bello J, Berger SL, Bonasio R, Desplan C, Reinberg D, Liebig J, Zwiebel LJ, Ray A. Specialized odorant receptors in social insects that detect cuticular hydrocarbon cues and candidate pheromones. Nature Communications. 8: 297. PMID 28819196 DOI: 10.1038/S41467-017-00099-1  0.498
2017 Gospocic J, Shields EJ, Glastad KM, Lin Y, Penick CA, Yan H, Mikheyev AS, Linksvayer TA, Garcia BA, Berger SL, Liebig J, Reinberg D, Bonasio R. The Neuropeptide Corazonin Controls Social Behavior and Caste Identity in Ants. Cell. 170: 748-759.e12. PMID 28802044 DOI: 10.1016/J.Cell.2017.07.014  0.492
2017 Yan H, Opachaloemphan C, Mancini G, Yang H, Gallitto M, Mlejnek J, Leibholz A, Haight K, Ghaninia M, Huo L, Perry M, Slone J, Zhou X, Traficante M, Penick CA, ... ... Bonasio R, et al. An Engineered orco Mutation Produces Aberrant Social Behavior and Defective Neural Development in Ants. Cell. 170: 736-747.e9. PMID 28802043 DOI: 10.1016/J.Cell.2017.06.051  0.505
2017 Beck DB, Bonasio R. Photoactivated In Vivo Proximity Labeling. Current Protocols in Chemical Biology. 9: 128-146. PMID 28628203 DOI: 10.1002/Cpch.18  0.321
2017 Bose DA, Donahue G, Reinberg D, Shiekhattar R, Bonasio R, Berger SL. RNA Binding to CBP Stimulates Histone Acetylation and Transcription. Cell. 168: 135-149.e22. PMID 28086087 DOI: 10.1016/J.Cell.2016.12.020  0.588
2016 He C, Sidoli S, Warneford-Thomson R, Tatomer DC, Wilusz JE, Garcia BA, Bonasio R. High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells. Molecular Cell. 64: 416-430. PMID 27768875 DOI: 10.1016/J.Molcel.2016.09.034  0.359
2016 Simola DF, Graham RJ, Brady CM, Enzmann BL, Desplan C, Ray A, Zwiebel LJ, Bonasio R, Reinberg D, Liebig J, Berger SL. Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus. Science (New York, N.Y.). 351. PMID 26722000 DOI: 10.1126/Science.Aac6633  0.557
2015 Bonasio R. The expanding epigenetic landscape of non-model organisms. The Journal of Experimental Biology. 218: 114-22. PMID 25568458 DOI: 10.1242/Jeb.110809  0.333
2015 Yan H, Bonasio R, Simola DF, Liebig J, Berger SL, Reinberg D. DNA methylation in social insects: how epigenetics can control behavior and longevity. Annual Review of Entomology. 60: 435-52. PMID 25341091 DOI: 10.1146/Annurev-Ento-010814-020803  0.541
2014 Beck DB, Narendra V, Drury WJ, Casey R, Jansen PW, Yuan ZF, Garcia BA, Vermeulen M, Bonasio R. In vivo proximity labeling for the detection of protein-protein and protein-RNA interactions. Journal of Proteome Research. 13: 6135-43. PMID 25311790 DOI: 10.1021/Pr500196B  0.326
2014 Bonasio R, Shiekhattar R. Regulation of transcription by long noncoding RNAs. Annual Review of Genetics. 48: 433-55. PMID 25251851 DOI: 10.1146/Annurev-Genet-120213-092323  0.379
2014 Yan H, Simola DF, Bonasio R, Liebig J, Berger SL, Reinberg D. Eusocial insects as emerging models for behavioural epigenetics. Nature Reviews. Genetics. 15: 677-88. PMID 25200663 DOI: 10.1038/Nrg3787  0.536
2014 Kaneko S, Son J, Bonasio R, Shen SS, Reinberg D. Nascent RNA interaction keeps PRC2 activity poised and in check. Genes & Development. 28: 1983-8. PMID 25170018 DOI: 10.1101/Gad.247940.114  0.592
2014 Bonasio R, Lecona E, Narendra V, Voigt P, Parisi F, Kluger Y, Reinberg D. Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes. Elife. 3: e02637. PMID 24986859 DOI: 10.7554/Elife.02637  0.585
2014 Saldaña-Meyer R, González-Buendía E, Guerrero G, Narendra V, Bonasio R, Recillas-Targa F, Reinberg D. CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53. Genes & Development. 28: 723-34. PMID 24696455 DOI: 10.1101/Gad.236869.113  0.583
2014 Bonasio R. The role of chromatin and epigenetics in the polyphenisms of ant castes. Briefings in Functional Genomics. 13: 235-45. PMID 24462993 DOI: 10.1093/Bfgp/Elt056  0.365
2014 Kaneko S, Bonasio R, Saldaña-Meyer R, Yoshida T, Son J, Nishino K, Umezawa A, Reinberg D. Interactions between JARID2 and Noncoding RNAs Regulate PRC2 Recruitment to Chromatin Molecular Cell. 53: 290-300. PMID 24374312 DOI: 10.1016/J.Molcel.2013.11.012  0.584
2014 Bonasio R, Lecona E, Narendra V, Voigt P, Parisi F, Kluger Y, Reinberg D. Author response: Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes Elife. DOI: 10.7554/Elife.02637.019  0.552
2013 Lecona E, Rojas LA, Bonasio R, Johnston A, Fernández-Capetillo O, Reinberg D. Polycomb protein SCML2 regulates the cell cycle by binding and modulating CDK/CYCLIN/p21 complexes. Plos Biology. 11: e1001737. PMID 24358021 DOI: 10.1371/Journal.Pbio.1001737  0.559
2013 Kaneko S, Son J, Shen SS, Reinberg D, Bonasio R. PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells Nature Structural and Molecular Biology. 20: 1258-1264. PMID 24141703 DOI: 10.1038/Nsmb.2700  0.587
2013 Zhang J, Bonasio R, Strino F, Kluger Y, Holloway JK, Modzelewski AJ, Cohen PE, Reinberg D. SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors. Genes & Development. 27: 749-66. PMID 23592795 DOI: 10.1101/Gad.210963.112  0.608
2013 Simola DF, Ye C, Mutti NS, Dolezal K, Bonasio R, Liebig J, Reinberg D, Berger SL. A chromatin link to caste identity in the carpenter ant Camponotus floridanus. Genome Research. 23: 486-96. PMID 23212948 DOI: 10.1101/Gr.148361.112  0.576
2012 Iwahara T, Bonasio R, Narendra V, Reinberg D. SIRT3 functions in the nucleus in the control of stress-related gene expression. Molecular and Cellular Biology. 32: 5022-34. PMID 23045395 DOI: 10.1128/Mcb.00822-12  0.528
2012 Bonasio R, Li Q, Lian J, Mutti NS, Jin L, Zhao H, Zhang P, Wen P, Xiang H, Ding Y, Jin Z, Shen SS, Wang Z, Wang W, Wang J, et al. Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Current Biology : Cb. 22: 1755-64. PMID 22885060 DOI: 10.1016/J.Cub.2012.07.042  0.539
2012 Gao Z, Zhang J, Bonasio R, Strino F, Sawai A, Parisi F, Kluger Y, Reinberg D. PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes. Molecular Cell. 45: 344-56. PMID 22325352 DOI: 10.1016/J.Molcel.2012.01.002  0.53
2012 Bonasio R. Emerging topics in epigenetics: ants, brains, and noncoding RNAs. Annals of the New York Academy of Sciences. 1260: 14-23. PMID 22239229 DOI: 10.1111/J.1749-6632.2011.06363.X  0.378
2011 Sims RJ, Rojas LA, Beck D, Bonasio R, Schüller R, Drury WJ, Eick D, Reinberg D. The C-terminal domain of RNA polymerase II is modified by site-specific methylation. Science (New York, N.Y.). 332: 99-103. PMID 21454787 DOI: 10.1126/Science.1202663  0.555
2010 Beck DB, Bonasio R, Kaneko S, Li G, Margueron R, Oda H, Sarma K, Sims RJ, Son J, Trojer P, Reinberg D. Chromatin in the nuclear landscape Cold Spring Harbor Symposia On Quantitative Biology. 75: 11-22. PMID 21502408 DOI: 10.1101/Sqb.2010.75.052  0.639
2010 Bonasio R, Tu S, Reinberg D. Molecular signals of epigenetic states. Science (New York, N.Y.). 330: 612-6. PMID 21030644 DOI: 10.1126/Science.1191078  0.562
2010 Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, et al. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science (New York, N.Y.). 329: 1068-71. PMID 20798317 DOI: 10.1126/Science.1192428  0.558
2010 Bonasio R, Lecona E, Reinberg D. MBT domain proteins in development and disease. Seminars in Cell & Developmental Biology. 21: 221-30. PMID 19778625 DOI: 10.1016/J.Semcdb.2009.09.010  0.568
2007 Bonasio R, Carman CV, Kim E, Sage PT, Love KR, Mempel TR, Springer TA, von Andrian UH. Specific and covalent labeling of a membrane protein with organic fluorochromes and quantum dots. Proceedings of the National Academy of Sciences of the United States of America. 104: 14753-8. PMID 17785425 DOI: 10.1073/Pnas.0705201104  0.536
2006 Bonasio R, Scimone ML, Schaerli P, Grabie N, Lichtman AH, von Andrian UH. Clonal deletion of thymocytes by circulating dendritic cells homing to the thymus. Nature Immunology. 7: 1092-100. PMID 16951687 DOI: 10.1038/Ni1385  0.73
2006 Bonasio R, von Andrian UH. Generation, migration and function of circulating dendritic cells. Current Opinion in Immunology. 18: 503-11. PMID 16777395 DOI: 10.1016/J.Coi.2006.05.011  0.539
2006 Bonasio R, Scimone ML, Schaerli P, Grabie N, Lichtman AH, von Andrian UH. Erratum: Corrigendum: Clonal deletion of thymocytes by circulating dendritic cells homing to the thymus Nature Immunology. 7: 1234-1234. DOI: 10.1038/Ni1106-1234B  0.692
2005 Cavanagh LL, Bonasio R, Mazo IB, Halin C, Cheng G, van der Velden AWM, Cariappa A, Chase C, Russell P, Starnbach MN, Koni PA, Pillai S, Weninger W, von Andrian UH. Activation of bone marrow-resident memory T cells by circulating, antigen-bearing dendritic cells Nature Immunology. 6: 1029-1037. PMID 16155571 DOI: 10.1038/Ni1249  0.536
2005 Halin C, Scimone ML, Bonasio R, Gauguet JM, Mempel TR, Quackenbush E, Proia RL, Mandala S, von Andrian UH. The S1P-analog FTY720 differentially modulates T-cell homing via HEV: T-cell-expressed S1P1 amplifies integrin activation in peripheral lymph nodes but not in Peyer patches. Blood. 106: 1314-22. PMID 15870184 DOI: 10.1182/Blood-2004-09-3687  0.677
2005 Mazo IB, Honczarenko M, Leung H, Cavanagh LL, Bonasio R, Weninger W, Engelke K, Xia L, McEver RP, Koni PA, Silberstein LE, von Andrian UH. Bone marrow is a major reservoir and site of recruitment for central memory CD8+ T cells. Immunity. 22: 259-70. PMID 15723813 DOI: 10.1016/J.Immuni.2005.01.008  0.558
2003 Schott E, Bonasio R, Ploegh HL. Elimination in vivo of developing T cells by natural killer cells. The Journal of Experimental Medicine. 198: 1213-24. PMID 14568980 DOI: 10.1084/Jem.20030918  0.337
2001 Rescigno M, Urbano M, Valzasina B, Francolini M, Rotta G, Bonasio R, Granucci F, Kraehenbuhl JP, Ricciardi-Castagnoli P. Dendritic cells express tight junction proteins and penetrate gut epithelial monolayers to sample bacteria. Nature Immunology. 2: 361-7. PMID 11276208 DOI: 10.1038/86373  0.336
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