| Year |
Citation |
Score |
| 2011 |
Sims GE, Kim SH. Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proceedings of the National Academy of Sciences of the United States of America. 108: 8329-34. PMID 21536867 DOI: 10.1073/Pnas.1105168108 |
0.619 |
|
| 2010 |
Jun SR, Sims GE, Wu GA, Kim SH. Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 133-8. PMID 20018669 DOI: 10.1073/Pnas.0913033107 |
0.634 |
|
| 2009 |
Sims GE, Jun SR, Wu GA, Kim SH. Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. Proceedings of the National Academy of Sciences of the United States of America. 106: 17077-82. PMID 19805074 DOI: 10.1073/Pnas.0909377106 |
0.623 |
|
| 2009 |
Wu GA, Jun SR, Sims GE, Kim SH. Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method. Proceedings of the National Academy of Sciences of the United States of America. 106: 12826-31. PMID 19553209 DOI: 10.1073/Pnas.0905115106 |
0.612 |
|
| 2009 |
Lee J, Kim SH. Water polygons in high-resolution protein crystal structures. Protein Science : a Publication of the Protein Society. 18: 1370-6. PMID 19551896 DOI: 10.1002/Pro.162 |
0.53 |
|
| 2009 |
Pereira JH, Kim SH. Structure of human Brn-5 transcription factor in complex with CRH gene promoter. Journal of Structural Biology. 167: 159-65. PMID 19450691 DOI: 10.1016/J.Jsb.2009.05.003 |
0.364 |
|
| 2009 |
Ha SC, Pereira JH, Jeong JH, Huh JH, Kim SH. Purification of human transcription factors Nanog and Sox2, each in complex with Skp, an Escherichia coli periplasmic chaperone. Protein Expression and Purification. 67: 164-8. PMID 19427902 DOI: 10.1016/J.Pep.2009.05.003 |
0.309 |
|
| 2009 |
Lee J, Kim SH. PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI. Acta Crystallographica. Section D, Biological Crystallography. 65: 399-402. PMID 19307724 DOI: 10.1107/S090744490900451X |
0.441 |
|
| 2009 |
Sims GE, Jun SR, Wu GA, Kim SH. Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proceedings of the National Academy of Sciences of the United States of America. 106: 2677-82. PMID 19188606 DOI: 10.1073/Pnas.0813249106 |
0.627 |
|
| 2009 |
Lee J, Kim SH. High-throughput T7 LIC vector for introducing C-terminal poly-histidine tags with variable lengths without extra sequences. Protein Expression and Purification. 63: 58-61. PMID 18824233 DOI: 10.1016/J.Pep.2008.09.005 |
0.528 |
|
| 2008 |
Dahl C, Schulte A, Stockdreher Y, Hong C, Grimm F, Sander J, Kim R, Kim SH, Shin DH. Structural and molecular genetic insight into a widespread sulfur oxidation pathway. Journal of Molecular Biology. 384: 1287-300. PMID 18952098 DOI: 10.1016/J.Jmb.2008.10.016 |
0.375 |
|
| 2008 |
Chi YI, Martick M, Lares M, Kim R, Scott WG, Kim SH. Capturing hammerhead ribozyme structures in action by modulating general base catalysis. Plos Biology. 6: e234. PMID 18834200 DOI: 10.1371/Journal.Pbio.0060234 |
0.781 |
|
| 2008 |
Kim SH, Shin DH, Kim R, Adams P, Chandonia JM. Structural genomics of minimal organisms: pipeline and results. Methods in Molecular Biology (Clifton, N.J.). 426: 475-96. PMID 18542885 DOI: 10.1007/978-1-60327-058-8_32 |
0.398 |
|
| 2008 |
Hwang KC, Kim JY, Chang W, Kim DS, Lim S, Kang SM, Song BW, Ha HY, Huh YJ, Choi IG, Hwang DY, Song H, Jang Y, Chung N, Kim SH, et al. Chemicals that modulate stem cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. 105: 7467-71. PMID 18480249 DOI: 10.1073/pnas.0802825105 |
0.643 |
|
| 2008 |
Pereira JH, Ha SC, Kim SH. Crystallization and preliminary X-ray analysis of human Brn-5 transcription factor in complex with DNA. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 64: 175-8. PMID 18323601 DOI: 10.1107/S1744309108003370 |
0.397 |
|
| 2008 |
Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, ... ... Kim SH, et al. Protein production and purification. Nature Methods. 5: 135-46. PMID 18235434 DOI: 10.1038/Nmeth.F.202 |
0.588 |
|
| 2008 |
Shin DH, Proudfoot M, Lim HJ, Choi IK, Yokota H, Yakunin AF, Kim R, Kim SH. Structural and enzymatic characterization of DR1281: A calcineurin-like phosphoesterase from Deinococcus radiodurans. Proteins. 70: 1000-9. PMID 17847097 DOI: 10.1002/Prot.21584 |
0.416 |
|
| 2008 |
Lee J, Kim S. High-Throughput Detergent Exchange Screening Method for Membrane Protein Crystallization The Faseb Journal. 22: 280-280. DOI: 10.1096/Fasebj.22.2_Supplement.280 |
0.514 |
|
| 2007 |
Shin DH, Hou J, Chandonia JM, Das D, Choi IG, Kim R, Kim SH. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center. Journal of Structural and Functional Genomics. 8: 99-105. PMID 17764033 DOI: 10.1007/S10969-007-9025-4 |
0.799 |
|
| 2007 |
Xu QS, Ankoudinova I, Lou Y, Yokota H, Kim R, Kim SH. Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans. Proteins. 69: 409-14. PMID 17636568 DOI: 10.1002/Prot.21292 |
0.346 |
|
| 2007 |
Oganesyan V, Adams PD, Jancarik J, Kim R, Kim SH. Structure of O67745_AQUAE, a hypothetical protein from Aquifex aeolicus. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 369-74. PMID 17565173 DOI: 10.1107/S1744309107018945 |
0.465 |
|
| 2007 |
Choi IG, Kim SH. Global extent of horizontal gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 104: 4489-94. PMID 17360551 DOI: 10.1073/pnas.0611557104 |
0.677 |
|
| 2007 |
Das D, Hyun H, Lou Y, Yokota H, Kim R, Kim SH. Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae. Proteins. 67: 776-82. PMID 17348019 DOI: 10.1002/Prot.21340 |
0.628 |
|
| 2007 |
Das D, Xu QS, Lee JY, Ankoudinova I, Huang C, Lou Y, DeGiovanni A, Kim R, Kim SH. Crystal structure of the multidrug efflux transporter AcrB at 3.1A resolution reveals the N-terminal region with conserved amino acids. Journal of Structural Biology. 158: 494-502. PMID 17275331 DOI: 10.1016/J.Jsb.2006.12.004 |
0.719 |
|
| 2007 |
Oganesyan N, Ankoudinova I, Kim SH, Kim R. Effect of osmotic stress and heat shock in recombinant protein overexpression and crystallization. Protein Expression and Purification. 52: 280-5. PMID 17126029 DOI: 10.1016/J.Pep.2006.09.015 |
0.344 |
|
| 2006 |
Choi IG, Kim SH. Evolution of protein structural classes and protein sequence families. Proceedings of the National Academy of Sciences of the United States of America. 103: 14056-61. PMID 16959887 DOI: 10.1073/pnas.0606239103 |
0.726 |
|
| 2006 |
Chandonia JM, Kim SH. Structural proteomics of minimal organisms: conservation of protein fold usage and evolutionary implications. Bmc Structural Biology. 6: 7. PMID 16566839 DOI: 10.1186/1472-6807-6-7 |
0.417 |
|
| 2006 |
Sims GE, Kim SH. A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring. Proceedings of the National Academy of Sciences of the United States of America. 103: 4428-32. PMID 16537409 DOI: 10.1073/Pnas.0511333103 |
0.68 |
|
| 2006 |
Shin DH, Kim JS, Yokota H, Kim R, Kim SH. Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae. Protein Science : a Publication of the Protein Society. 15: 921-8. PMID 16522803 DOI: 10.1110/Ps.051993506 |
0.442 |
|
| 2006 |
Kim JS, Shin DH, Pufan R, Huang C, Yokota H, Kim R, Kim SH. Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning. Proteins. 62: 322-8. PMID 16294331 DOI: 10.1002/Prot.20751 |
0.452 |
|
| 2006 |
Chandonia JM, Kim SH, Brenner SE. Target selection and deselection at the Berkeley Structural Genomics Center. Proteins. 62: 356-70. PMID 16276528 DOI: 10.1002/Prot.20674 |
0.388 |
|
| 2005 |
Oganesyan V, Huang C, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH. Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 640-6. PMID 16511117 DOI: 10.1107/S1744309105019780 |
0.397 |
|
| 2005 |
Xu QS, Jancarik J, Lou Y, Kuznetsova K, Yakunin AF, Yokota H, Adams P, Kim R, Kim SH. Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. Journal of Structural and Functional Genomics. 6: 269-79. PMID 16283428 DOI: 10.1007/S10969-005-9001-9 |
0.37 |
|
| 2005 |
Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH. Crystal structure of TM1457 from Thermotoga maritima. Journal of Structural Biology. 152: 113-7. PMID 16242963 DOI: 10.1016/J.Jsb.2005.08.008 |
0.467 |
|
| 2005 |
Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH. Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP. Journal of Molecular Biology. 354: 289-303. PMID 16242716 DOI: 10.1016/J.Jmb.2005.09.026 |
0.377 |
|
| 2005 |
Oganesyan N, Kim SH, Kim R. On-column protein refolding for crystallization. Journal of Structural and Functional Genomics. 6: 177-82. PMID 16211516 DOI: 10.1007/S10969-005-2827-3 |
0.428 |
|
| 2005 |
Kim SH, Shin DH, Liu J, Oganesyan V, Chen S, Xu QS, Kim JS, Das D, Schulze-Gahmen U, Holbrook SR, Holbrook EL, Martinez BA, Oganesyan N, DeGiovanni A, Lou Y, et al. Structural genomics of minimal organisms and protein fold space. Journal of Structural and Functional Genomics. 6: 63-70. PMID 16211501 DOI: 10.1007/S10969-005-2651-9 |
0.807 |
|
| 2005 |
Schulze-Gahmen U, Aono S, Chen S, Yokota H, Kim R, Kim SH. Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function. Acta Crystallographica. Section D, Biological Crystallography. 61: 1343-7. PMID 16204885 DOI: 10.1107/S090744490502264X |
0.377 |
|
| 2005 |
Chen S, Yakunin AF, Proudfoot M, Kim R, Kim SH. Structural and functional characterization of a 5,10-methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087). Proteins. 61: 433-43. PMID 16104022 DOI: 10.1002/Prot.20591 |
0.399 |
|
| 2005 |
Liu J, Huang C, Shin DH, Yokota H, Jancarik J, Kim JS, Adams PD, Kim R, Kim SH. Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization. Journal of Molecular Biology. 350: 987-96. PMID 15979091 DOI: 10.1016/J.Jmb.2005.04.021 |
0.425 |
|
| 2005 |
Oganesyan V, Oganesyan N, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH. Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus. Journal of Bacteriology. 187: 4238-44. PMID 15937186 DOI: 10.1128/Jb.187.12.4238-4244.2005 |
0.449 |
|
| 2005 |
Liu J, Oganesyan N, Shin DH, Jancarik J, Yokota H, Kim R, Kim SH. Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form. Proteins. 59: 875-81. PMID 15815978 DOI: 10.1002/Prot.20421 |
0.317 |
|
| 2005 |
Shin DH, Oganesyan N, Jancarik J, Yokota H, Kim R, Kim SH. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. The Journal of Biological Chemistry. 280: 18326-35. PMID 15753098 DOI: 10.1074/Jbc.M501622200 |
0.406 |
|
| 2005 |
Kim JS, DeGiovanni A, Jancarik J, Adams PD, Yokota H, Kim R, Kim SH. Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proceedings of the National Academy of Sciences of the United States of America. 102: 3248-53. PMID 15728358 DOI: 10.1073/Pnas.0409851102 |
0.382 |
|
| 2005 |
Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH. Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters. The Journal of Biological Chemistry. 280: 15960-6. PMID 15716271 DOI: 10.1074/Jbc.M414117200 |
0.385 |
|
| 2005 |
Hou J, Jun SR, Zhang C, Kim SH. Global mapping of the protein structure space and application in structure-based inference of protein function. Proceedings of the National Academy of Sciences of the United States of America. 102: 3651-6. PMID 15705717 DOI: 10.1073/Pnas.0409772102 |
0.671 |
|
| 2005 |
Sims GE, Choi IG, Kim SH. Protein conformational space in higher order phi-Psi maps. Proceedings of the National Academy of Sciences of the United States of America. 102: 618-21. PMID 15640351 DOI: 10.1073/Pnas.0408746102 |
0.775 |
|
| 2005 |
Das D, Oganesyan N, Yokota H, Pufan R, Kim R, Kim SH. Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae. Proteins. 58: 504-8. PMID 15562512 DOI: 10.1002/Prot.20316 |
0.65 |
|
| 2005 |
Wang W, Kim R, Yokota H, Kim SH. Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima. Proteins. 58: 246-8. PMID 15468322 DOI: 10.1002/Prot.20207 |
0.39 |
|
| 2004 |
Card GL, England BP, Suzuki Y, Fong D, Powell B, Lee B, Luu C, Tabrizizad M, Gillette S, Ibrahim PN, Artis DR, Bollag G, Milburn MV, Kim SH, Schlessinger J, et al. Structural basis for the activity of drugs that inhibit phosphodiesterases. Structure (London, England : 1993). 12: 2233-47. PMID 15576036 DOI: 10.1016/J.Str.2004.10.004 |
0.348 |
|
| 2004 |
Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH. Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain. Proceedings of the National Academy of Sciences of the United States of America. 101: 13198-203. PMID 15331784 DOI: 10.1073/Pnas.0405202101 |
0.392 |
|
| 2004 |
Shin DH, Brandsen J, Jancarik J, Yokota H, Kim R, Kim SH. Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. Journal of Molecular Biology. 341: 227-39. PMID 15312775 DOI: 10.1016/J.Jmb.2004.05.055 |
0.372 |
|
| 2004 |
Chen S, Shin DH, Pufan R, Kim R, Kim SH. Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 A resolution. Proteins. 56: 839-43. PMID 15281135 DOI: 10.1002/Prot.20214 |
0.39 |
|
| 2004 |
Busso D, Kim R, Kim SH. Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins. Journal of Structural and Functional Genomics. 5: 69-74. PMID 15263845 DOI: 10.1023/B:Jsfg.0000029197.44728.C5 |
0.354 |
|
| 2004 |
Zhang KY, Card GL, Suzuki Y, Artis DR, Fong D, Gillette S, Hsieh D, Neiman J, West BL, Zhang C, Milburn MV, Kim SH, Schlessinger J, Bollag G. A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases. Molecular Cell. 15: 279-86. PMID 15260978 DOI: 10.1016/J.Molcel.2004.07.005 |
0.386 |
|
| 2004 |
Oganesyan V, Pufan R, DeGiovanni A, Yokota H, Kim R, Kim SH. Structure of the putative DNA-binding protein SP_1288 from Streptococcus pyogenes. Acta Crystallographica. Section D, Biological Crystallography. 60: 1266-71. PMID 15213388 DOI: 10.1107/S0907444904009394 |
0.422 |
|
| 2004 |
Liu J, Yokota H, Kim R, Kim SH. A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins. Proteins. 55: 1082-6. PMID 15146506 DOI: 10.1002/Prot.20119 |
0.428 |
|
| 2004 |
Chen S, Jancrick J, Yokota H, Kim R, Kim SH. Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif. Proteins. 55: 785-91. PMID 15146477 DOI: 10.1002/Prot.10593 |
0.484 |
|
| 2004 |
Chen S, Yakunin AF, Kuznetsova E, Busso D, Pufan R, Proudfoot M, Kim R, Kim SH. Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii. The Journal of Biological Chemistry. 279: 31854-62. PMID 15128743 DOI: 10.1074/Jbc.M401059200 |
0.424 |
|
| 2004 |
Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH. Structure of OsmC from Escherichia coli: a salt-shock-induced protein. Acta Crystallographica. Section D, Biological Crystallography. 60: 903-11. PMID 15103136 DOI: 10.1107/S0907444904005013 |
0.724 |
|
| 2004 |
Xu QS, Shin DH, Pufan R, Yokota H, Kim R, Kim SH. Crystal structure of a phosphotransacetylase from Streptococcus pyogenes. Proteins. 55: 479-81. PMID 15048838 DOI: 10.1002/Prot.20039 |
0.387 |
|
| 2004 |
Choi IG, Kwon J, Kim SH. Local feature frequency profile: a method to measure structural similarity in proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 3797-802. PMID 14985506 DOI: 10.1073/Pnas.0308656100 |
0.735 |
|
| 2003 |
Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R. Structure-based functional inference in structural genomics. Journal of Structural and Functional Genomics. 4: 129-35. PMID 14649297 DOI: 10.1023/A:1026200610644 |
0.731 |
|
| 2003 |
Shin DH, Nguyen HH, Jancarik J, Yokota H, Kim R, Kim SH. Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Biochemistry. 42: 13429-37. PMID 14621988 DOI: 10.1021/Bi035118H |
0.373 |
|
| 2003 |
Moshinsky DJ, Bellamacina CR, Boisvert DC, Huang P, Hui T, Jancarik J, Kim SH, Rice AG. SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2. Biochemical and Biophysical Research Communications. 310: 1026-31. PMID 14550307 DOI: 10.1016/J.Bbrc.2003.09.114 |
0.317 |
|
| 2003 |
Liu J, Wang W, Shin DH, Yokota H, Kim R, Kim SH. Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold. Proteins. 53: 326-8. PMID 14517984 DOI: 10.1002/Prot.10479 |
0.384 |
|
| 2003 |
Sims GE, Kim SH. Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nucleic Acids Research. 31: 5607-16. PMID 14500824 DOI: 10.1093/Nar/Gkg750 |
0.669 |
|
| 2003 |
Choi IG, Shin DH, Brandsen J, Jancarik J, Busso D, Yokota H, Kim R, Kim SH. Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. Journal of Structural and Functional Genomics. 4: 31-4. PMID 12943365 DOI: 10.1023/A:1024625122089 |
0.708 |
|
| 2003 |
Wang W, Kim R, Jancarik J, Yokota H, Kim SH. Crystal structure of a flavin-binding protein from Thermotoga maritima. Proteins. 52: 633-5. PMID 12910462 DOI: 10.1002/Prot.10353 |
0.408 |
|
| 2003 |
Oganesyan V, Busso D, Brandsen J, Chen S, Jancarik J, Kim R, Kim SH. Structure of the hypothetical protein AQ_1354 from Aquifex aeolicus. Acta Crystallographica. Section D, Biological Crystallography. 59: 1219-23. PMID 12832766 DOI: 10.1107/S0907444903011028 |
0.468 |
|
| 2003 |
Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE, Kim SH. Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima. Protein Science : a Publication of the Protein Society. 12: 1464-72. PMID 12824492 DOI: 10.1110/Ps.0302703 |
0.438 |
|
| 2003 |
Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S, Kim SH. On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii. Proceedings of the National Academy of Sciences of the United States of America. 100: 8151-5. PMID 12817080 DOI: 10.1073/Pnas.1032940100 |
0.376 |
|
| 2003 |
Busso D, Kim R, Kim SH. Expression of soluble recombinant proteins in a cell-free system using a 96-well format. Journal of Biochemical and Biophysical Methods. 55: 233-40. PMID 12706907 DOI: 10.1016/S0165-022X(03)00049-6 |
0.353 |
|
| 2003 |
Hou J, Sims GE, Zhang C, Kim SH. A global representation of the protein fold space. Proceedings of the National Academy of Sciences of the United States of America. 100: 2386-90. PMID 12606708 DOI: 10.1073/Pnas.2628030100 |
0.777 |
|
| 2003 |
Schulze-Gahmen U, Pelaschier J, Yokota H, Kim R, Kim SH. Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins. 50: 526-30. PMID 12577257 DOI: 10.1002/Prot.10305 |
0.454 |
|
| 2003 |
Zhang C, Kim SH. Overview of structural genomics: from structure to function. Current Opinion in Chemical Biology. 7: 28-32. PMID 12547423 DOI: 10.1016/S1367-5931(02)00015-7 |
0.444 |
|
| 2002 |
Huang L, Hung L, Odell M, Yokota H, Kim R, Kim SH. Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii. Journal of Structural and Functional Genomics. 2: 121-7. PMID 12836702 DOI: 10.1023/A:1021279113558 |
0.427 |
|
| 2002 |
Shin DH, Yokota H, Kim R, Kim SH. Crystal structure of a conserved hypothetical protein from Escherichia coli. Journal of Structural and Functional Genomics. 2: 53-66. PMID 12836674 DOI: 10.1023/A:1014450817696 |
0.481 |
|
| 2002 |
Shin DH, Yokota H, Kim R, Kim SH. Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus. Proceedings of the National Academy of Sciences of the United States of America. 99: 7980-5. PMID 12060744 DOI: 10.1073/Pnas.132241399 |
0.492 |
|
| 2002 |
Wang W, Cho HS, Kim R, Jancarik J, Yokota H, Nguyen HH, Grigoriev IV, Wemmer DE, Kim SH. Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. Journal of Molecular Biology. 319: 421-31. PMID 12051918 DOI: 10.1016/S0022-2836(02)00324-8 |
0.357 |
|
| 2002 |
Zhang C, Hou J, Kim SH. Fold prediction of helical proteins using torsion angle dynamics and predicted restraints. Proceedings of the National Academy of Sciences of the United States of America. 99: 3581-5. PMID 11904420 DOI: 10.1073/Pnas.052003799 |
0.637 |
|
| 2002 |
Martinez-Cruz LA, Dreyer MK, Boisvert DC, Yokota H, Martinez-Chantar ML, Kim R, Kim SH. Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase. Structure (London, England : 1993). 10: 195-204. PMID 11839305 DOI: 10.1016/S0969-2126(02)00701-3 |
0.393 |
|
| 2002 |
Schulze-Gahmen U, Kim SH. Structural basis for CDK6 activation by a virus-encoded cyclin. Nature Structural Biology. 9: 177-81. PMID 11828325 DOI: 10.1038/Nsb756 |
0.329 |
|
| 2001 |
Du X, Wang W, Kim R, Yakota H, Nguyen H, Kim SH. Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii. Biochemistry. 40: 14166-72. PMID 11714269 DOI: 10.1021/Bi0115479 |
0.576 |
|
| 2001 |
Schulze-Gahmen U, Kim SH. Crystallization of a complex between human CDK6 and a virus-encoded cyclin is critically dependent on the addition of small charged organic molecules Acta Crystallographica Section D: Biological Crystallography. 57: 1287-1289. PMID 11526321 DOI: 10.1107/S0907444901009283 |
0.322 |
|
| 2001 |
Grigoriev IV, Zhang C, Kim S. Sequence-based detection of distantly related proteins with the same fold Protein Engineering. 14: 455-458. PMID 11522917 DOI: 10.1093/Protein/14.7.455 |
0.352 |
|
| 2001 |
Cho H, Wang W, Kim R, Yokota H, Damo S, Kim SH, Wemmer D, Kustu S, Yan D. BeF3 - acts as a phosphate analog in proteins phosphorylated on aspartate: Structure of a BeF3 - complex with phosphoserine phosphatase Proceedings of the National Academy of Sciences of the United States of America. 98: 8525-8530. PMID 11438683 DOI: 10.1073/Pnas.131213698 |
0.424 |
|
| 2001 |
Du X, Frei H, Kim SH. Comparison of nitrophenylethyl and hydroxyphenacyl caging groups. Biopolymers. 62: 147-9. PMID 11343283 DOI: 10.1002/Bip.1007 |
0.494 |
|
| 2001 |
Wang W, Kim R, Jancarik J, Yokota H, Kim SH. Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 Å resolution Structure. 9: 65-71. PMID 11342136 DOI: 10.1016/S0969-2126(00)00558-X |
0.433 |
|
| 2001 |
Dreyer MK, Borcherding DR, Dumont JA, Peet NP, Tsay JT, Wright PS, Bitonti AJ, Shen J, Kim SH. Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717 Journal of Medicinal Chemistry. 44: 524-530. PMID 11170642 DOI: 10.1021/Jm001043T |
0.348 |
|
| 2000 |
Adler M, Davey DD, Phillips GB, Kim SH, Jancarik J, Rumennik G, Light DR, Whitlow M. Preparation, characterization, and the crystal structure of the inhibitor ZK-807834 (CI-1031) complexed with factor Xa Biochemistry. 39: 12534-12542. PMID 11027132 DOI: 10.1021/Bi001477Q |
0.385 |
|
| 2000 |
Lai L, Yokota H, Hung LW, Kim R, Kim SH. Crystal structure of archaeal RNase HII: a homologue of human major RNase H. Structure (London, England : 1993). 8: 897-904. PMID 10997908 DOI: 10.1016/S0969-2126(00)00179-9 |
0.385 |
|
| 2000 |
Falke JJ, Kim SH. Structure of a conserved receptor domain that regulates kinase activity: the cytoplasmic domain of bacterial taxis receptors. Current Opinion in Structural Biology. 10: 462-9. PMID 10981636 DOI: 10.1016/S0959-440X(00)00115-9 |
0.324 |
|
| 2000 |
Zhang C, Kim S. A comprehensive analysis of the Greek key motifs in protein ?-barrels and ?-sandwiches Proteins. 40: 409-419. PMID 10861931 DOI: 10.1002/1097-0134(20000815)40:3<409::Aid-Prot60>3.0.Co;2-6 |
0.343 |
|
| 2000 |
Kim R, Yokota H, Kim SH. Electrophoresis of proteins and protein-protein complexes in a native agarose gel Analytical Biochemistry. 282: 147-149. PMID 10860512 DOI: 10.1006/Abio.2000.4598 |
0.349 |
|
| 2000 |
Kim SH. Structural genomics of microbes: An objective Current Opinion in Structural Biology. 10: 380-383. PMID 10851198 DOI: 10.1016/S0959-440X(00)00100-7 |
0.401 |
|
| 2000 |
Zhang C, Kim S. The anatomy of protein β-sheet topology Journal of Molecular Biology. 299: 1075-1089. PMID 10843859 DOI: 10.1006/Jmbi.2000.3678 |
0.366 |
|
| 2000 |
Du X, Frei H, Kim SH. The mechanism of GTP hydrolysis by Ras probed by Fourier transform infrared spectroscopy. The Journal of Biological Chemistry. 275: 8492-500. PMID 10722686 DOI: 10.1074/Jbc.275.12.8492 |
0.511 |
|
| 2000 |
Zhang C, Kim S. Environment-dependent residue contact energies for proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 2550-2555. PMID 10706611 DOI: 10.1073/Pnas.040573597 |
0.373 |
|
| 2000 |
Wang H, Boisvert D, Kim KK, Kim R, Kim SH. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution. The Embo Journal. 19: 317-23. PMID 10654930 DOI: 10.1093/Emboj/19.3.317 |
0.428 |
|
| 2000 |
Zhang Z, Berry EA, Huang L, Kim S. Mitochondrial cytochrome bc1 complex. Sub-Cellular Biochemistry. 35: 541-580. DOI: 10.1007/0-306-46828-X_16 |
0.491 |
|
| 1999 |
Müller-Dieckmann HJ, Grantz AA, Kim SH. The structure of the signal receiver domain of the Arabidopsis thaliana ethylene receptor ETR1. Structure (London, England : 1993). 7: 1547-56. PMID 10647185 DOI: 10.1016/S0969-2126(00)88345-8 |
0.748 |
|
| 1999 |
Berry EA, Huang LS, Zhang Z, Kim SH. Structure of the avian mitochondrial cytochrome bc1 complex Journal of Bioenergetics and Biomembranes. 31: 177-190. PMID 10591524 DOI: 10.1023/A:1005459426843 |
0.606 |
|
| 1999 |
Grigoriev IV, Kim S. Detection of protein fold similarity based on correlation of amino acid properties Proceedings of the National Academy of Sciences of the United States of America. 96: 14318-14323. PMID 10588703 DOI: 10.1073/Pnas.96.25.14318 |
0.38 |
|
| 1999 |
Kim KK, Yokota H, Kim SH. Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor Nature. 400: 787-792. PMID 10466731 DOI: 10.1038/23512 |
0.322 |
|
| 1999 |
Dubchak I, Muchnik I, Mayor C, Dralyuk I, Kim SH. Recognition of a protein fold in the context of the SCOP classification Proteins: Structure, Function and Genetics. 35: 401-407. PMID 10382667 DOI: 10.1002/(Sici)1097-0134(19990601)35:4<401::Aid-Prot3>3.0.Co;2-K |
0.402 |
|
| 1999 |
Schulze-Gahmen U, Jung JU, Kim S. Crystal structure of a viral cyclin, a positive regulator of cyclin-dependent kinase 6. Structure. 7: 245-254. PMID 10368294 DOI: 10.1016/S0969-2126(99)80035-5 |
0.335 |
|
| 1999 |
Wang H, Yokota H, Kim R, Kim SH. Expression, purification and preliminary x-ray analysis of a fibrillarin homolog from Methanococcus jannaschii, a hyperthermophile Acta Crystallographica Section D: Biological Crystallography. 55: 338-340. PMID 10089444 DOI: 10.1107/S0907444998007513 |
0.393 |
|
| 1999 |
Hung LW, Kohmura M, Ariyoshi Y, Kim SH. Structural differences in D and L-monellin in the crystals of racemic mixture. Journal of Molecular Biology. 285: 311-21. PMID 9878408 DOI: 10.1006/Jmbi.1998.2308 |
0.359 |
|
| 1998 |
Hung LW, Wang IX, Nikaido K, Liu PQ, Ames GF, Kim SH. Crystal structure of the ATP-binding subunit of an ABC transporter. Nature. 396: 703-7. PMID 9872322 DOI: 10.1038/25393 |
0.398 |
|
| 1998 |
Hung LW, Kohmura M, Ariyoshi Y, Kim SH. Structure of an enantiomeric protein, D-monellin at 1.8 A resolution. Acta Crystallographica. Section D, Biological Crystallography. 54: 494-500. PMID 9867435 DOI: 10.1107/S0907444997012225 |
0.352 |
|
| 1998 |
Zarembinski TI, Hung LW, Mueller-Dieckmann HJ, Kim KK, Yokota H, Kim R, Kim SH. Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics. Proceedings of the National Academy of Sciences of the United States of America. 95: 15189-93. PMID 9860944 DOI: 10.1073/Pnas.95.26.15189 |
0.48 |
|
| 1998 |
Dubchak I, Muchnik I, Kim SH. Assignment of folds for proteins of unknown function in three microbial genomes Microbial & Comparative Genomics. 3: 171-175. PMID 9775387 DOI: 10.1089/Omi.1.1998.3.171 |
0.403 |
|
| 1998 |
Grantz AA, Müller-Dieckmann HJ, Kim SH. Subcloning, crystallization and preliminary X-ray analysis of the signal receiver domain of ETR1, an ethylene receptor from Arabidopsis thaliana. Acta Crystallographica. Section D, Biological Crystallography. 54: 690-2. PMID 9761877 DOI: 10.1107/S0907444997015023 |
0.72 |
|
| 1998 |
Goldman S, Kim R, Hung LW, Jancarik J, Kim SH. Purification, crystallization and preliminary X-ray crystallographic analysis of Pyrococcus furiosus DNA polymerase. Acta Crystallographica. Section D, Biological Crystallography. 54: 986-8. PMID 9757114 DOI: 10.1107/S0907444998000353 |
0.34 |
|
| 1998 |
Kim KK, Hung LW, Yokota H, Kim R, Kim SH. Crystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution. Proceedings of the National Academy of Sciences of the United States of America. 95: 10419-24. PMID 9724718 DOI: 10.1073/Pnas.95.18.10419 |
0.391 |
|
| 1998 |
Kim KK, Kim R, Kim SH. Crystal structure of a small heat-shock protein Nature. 394: 595-599. PMID 9707123 DOI: 10.1038/29106 |
0.383 |
|
| 1998 |
Kim SH. Shining a light on structural genomics Nature Structural Biology. 5: 643-645. PMID 9699614 DOI: 10.1038/1334 |
0.409 |
|
| 1998 |
Kim R, Kim KK, Yokota H, Kim SH. Small heat shock protein of Methanococcus jannaschii, a hyperthermophile Proceedings of the National Academy of Sciences of the United States of America. 95: 9129-9133. PMID 9689045 DOI: 10.1073/Pnas.95.16.9129 |
0.357 |
|
| 1998 |
Gray NS, Wodicka L, Thunnissen AM, Norman TC, Kwon S, Espinoza FH, Morgan DO, Barnes G, LeClerc S, Meijer L, Kim SH, Lockhart DJ, Schultz PG. Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors. Science (New York, N.Y.). 281: 533-8. PMID 9677190 DOI: 10.1126/Science.281.5376.533 |
0.35 |
|
| 1998 |
Kamata K, Kawamoto H, Honma T, Iwama T, Kim S. Structural Basis for Chemical Inhibition of Human Blood Coagulation Factor Xa Proceedings of the National Academy of Sciences of the United States of America. 95: 6630-6635. PMID 9618463 DOI: 10.1073/Pnas.95.12.6630 |
0.348 |
|
| 1998 |
Kim KK, Yokota H, Santoso S, Lerner D, Kim R, Kim S. Purification, Crystallization, and Preliminary X-Ray Crystallographic Data Analysis of Small Heat Shock Protein Homolog fromMethanococcus jannaschii,a Hyperthermophile☆ Journal of Structural Biology. 121: 76-80. PMID 9573624 DOI: 10.1006/Jsbi.1998.3969 |
0.383 |
|
| 1998 |
Kim S, Lawrence EO. Structure-based inhibitor design for CDK2, a cell cycle controlling protein kinase Pure and Applied Chemistry. 70: 555-565. DOI: 10.1351/Pac199870030555 |
0.36 |
|
| 1996 |
Kim SH, Schulze-Gahmen U, Brandsen J, de Azevedo Júnior WF. Structural basis for chemical inhibition of CDK2 Progress in Cell Cycle Research. 2: 137-145. PMID 9552391 DOI: 10.1007/978-1-4615-5873-6_14 |
0.323 |
|
| 1996 |
Jamieson AC, Wang H, Kim SH. A zinc finger directory for high-affinity DNA recognition Proceedings of the National Academy of Sciences of the United States of America. 93: 12834-12839. PMID 8917505 DOI: 10.1073/Pnas.93.23.12834 |
0.313 |
|
| 1996 |
Kim KK, Chamberlin HM, Morgan DO, Kim S. Three-dimensional structure of human cyclin H, a positive regulator of the CDK-activating kinase. Nature Structural & Molecular Biology. 3: 849-855. PMID 8836101 DOI: 10.1038/Nsb1096-849 |
0.332 |
|
| 1996 |
Yeh JI, Biemann HP, Privé GG, Pandit J, Koshland DE, Kim SH. High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor Journal of Molecular Biology. 262: 186-201. PMID 8831788 DOI: 10.1006/Jmbi.1996.0507 |
0.69 |
|
| 1995 |
Berry EA, Shulmeister VM, Huang LS, Kim SH. A new crystal form of bovine heart ubiquinol: cytochrome c oxidoreductase: determination of space group and unit-cell parameters. Acta Crystallographica. Section D, Biological Crystallography. 51: 235-9. PMID 15299325 DOI: 10.1107/S0907444994010486 |
0.358 |
|
| 1995 |
Somoza JR, Cho JM, Kim SH. The taste-active regions of monellin, a potently sweet protein Chemical Senses. 20: 61-68. PMID 7796059 DOI: 10.1093/Chemse/20.1.61 |
0.41 |
|
| 1995 |
Dubchak I, Muchnik I, Holbrook SR, Kim SH. Prediction of protein folding class using global description of amino acid sequence Proceedings of the National Academy of Sciences of the United States of America. 92: 8700-8704. PMID 7568000 DOI: 10.1073/Pnas.92.19.8700 |
0.336 |
|
| 1995 |
Schulze-Gahmen U, Brandsen J, Jones HD, Morgan DO, Meijer L, Vesely J, Kim SH. Multiple modes of ligand recognition: crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopentenyladenine. Proteins. 22: 378-91. PMID 7479711 DOI: 10.1002/Prot.340220408 |
0.346 |
|
| 1995 |
Shin W, Kim SJ, Shin JM, Kim SH. Structure-taste correlations in sweet dihydrochalcone, sweet dihydroisocoumarin, and bitter flavone compounds Journal of Medicinal Chemistry. 38: 4325-4331. PMID 7473560 DOI: 10.1021/Jm00021A022 |
0.383 |
|
| 1994 |
Jamieson AC, Kim SH, Wells JA. In vitro selection of zinc fingers with altered DNA-binding specificity Biochemistry®. 33: 5689-5695. PMID 8180194 DOI: 10.1021/Bi00185A004 |
0.348 |
|
| 1994 |
Kim SH. 'Frozen' dynamic dimer model for transmembrane signaling in bacterial chemotaxis receptors Protein Science. 3: 159-165. PMID 8003953 DOI: 10.1002/Pro.5560030201 |
0.32 |
|
| 1993 |
De Bondt HL, Rosenblatt J, Jancarik J, Jones HD, Morgan DO, Kim SH. Crystal structure of cyclin-dependent kinase 2 Nature. 363: 595-602. PMID 8510751 DOI: 10.1038/363595A0 |
0.372 |
|
| 1993 |
Dubchak I, Holbrook SR, Kim SH. Prediction of protein folding class from amino acid composition Proteins: Structure, Function and Genetics. 16: 79-91. PMID 8497486 DOI: 10.1002/Prot.340160109 |
0.324 |
|
| 1993 |
Yeh JI, Biemann HP, Pandit J, Koshland DE, Kim SH. The three-dimensional structure of the ligand-binding domain of a wild-type bacterial chemotaxis receptor: Structural comparison to the cross-linked mutant forms and conformational changes upon ligand binding Journal of Biological Chemistry. 268: 9787-9792. PMID 8486661 DOI: 10.2210/Pdb1Was/Pdb |
0.527 |
|
| 1993 |
Weng X, Luecke H, Song IS, Kang DS, Kim SH, Huber R. Crystal structure of human annexin I at 2.5 A resolution. Protein Science : a Publication of the Protein Society. 2: 448-58. PMID 8453382 DOI: 10.1002/Pro.5560020317 |
0.438 |
|
| 1993 |
Scott WG, Milligan DL, Milburn MV, Privé GG, Yeh J, Koshland DE, Kim SH. Refined structures of the ligand-binding domain of the aspartate receptor from Salmonella typhimurium Journal of Molecular Biology. 232: 555-573. PMID 8345523 DOI: 10.1006/Jmbi.1993.1411 |
0.754 |
|
| 1993 |
Somoza JR, Jiang F, Tong L, Kang CH, Cho JM, Kim SH. Two crystal structures of a potently sweet protein. Natural monellin at 2.75 A resolution and single-chain monellin at 1.7 A resolution. Journal of Molecular Biology. 234: 390-404. PMID 8230222 DOI: 10.1006/Jmbi.1993.1594 |
0.596 |
|
| 1992 |
Muskal SM, Kim SH. Predicting protein secondary structure content. A tandem neural network approach Journal of Molecular Biology. 225: 713-727. PMID 1602478 DOI: 10.1016/0022-2836(92)90396-2 |
0.351 |
|
| 1992 |
Privé GG, Milburn MV, Tong L, de Vos AM, Yamaizumi Z, Nishimura S, Kim SH. X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 89: 3649-53. PMID 1565661 DOI: 10.1073/Pnas.89.8.3649 |
0.682 |
|
| 1992 |
Chung HH, Kim R, Kim SH. Biochemical and biological activity of phosphorylated and non-phosphorylated ras p21 mutants Bba - Gene Structure and Expression. 1129: 278-286. PMID 1536879 DOI: 10.1016/0167-4781(92)90504-S |
0.301 |
|
| 1992 |
Tomic MT, Somoza JR, Wemmer DE, Park YW, Cho JM, Kim SH. 1H resonance assignments, secondary structure and general topology of single-chain monellin in solution as determined by 1H 2D-NMR. Journal of Biomolecular Nmr. 2: 557-72. PMID 1490107 DOI: 10.1007/Bf02192845 |
0.388 |
|
| 1992 |
Ogata CM, Gordon PF, de Vos AM, Kim SH. Crystal structure of a sweet tasting protein thaumatin I, at 1·65 Å resolution Journal of Molecular Biology. 228: 893-908. PMID 1469722 DOI: 10.1016/0022-2836(92)90873-I |
0.393 |
|
| 1992 |
Pandit J, Bohm A, Jancarik J, Halenbeck R, Koths K, Kim S. Three-dimensional structure of dimeric human recombinant macrophage colony-stimulating factor Science. 258: 1358-1362. PMID 1455231 DOI: 10.1126/Science.1455231 |
0.31 |
|
| 1992 |
Kim SH, Prive GG, Yeh J, Scott WG, Milburn MV. A model for transmembrane signaling in a bacterial chemotaxis receptor Cold Spring Harbor Symposia On Quantitative Biology. 57: 17-24. PMID 1339657 DOI: 10.1101/Sqb.1992.057.01.004 |
0.64 |
|
| 1992 |
Hodel A, Kim S, Brünger AT. Model bias in macromolecular crystal structures Acta Crystallographica Section A. 48: 851-858. DOI: 10.1107/S0108767392006044 |
0.389 |
|
| 1992 |
Peñarrubia L, Kim R, Giovannoni J, Kim SH, Fischer RL. Production of the sweet protein monellin in transgenic plants Nature Biotechnology. 10: 561-564. DOI: 10.1038/Nbt0592-561 |
0.328 |
|
| 1991 |
Jiang F, Kim S. Soft docking": matching of molecular surface cubes. Journal of Molecular Biology. 219: 79-102. PMID 2023263 DOI: 10.1016/0022-2836(91)90859-5 |
0.36 |
|
| 1991 |
Holbrook SR, Cheong C, Tinoco I, Kim SH. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353: 579-81. PMID 1922368 DOI: 10.1038/353579A0 |
0.364 |
|
| 1991 |
Tong LA, de Vos AM, Milburn MV, Kim SH. Crystal structures at 2.2 A resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP. Journal of Molecular Biology. 217: 503-16. PMID 1899707 DOI: 10.1016/0022-2836(91)90753-S |
0.587 |
|
| 1991 |
Milburn MV, Privé GG, Milligan DL, Scott WG, Yeh J, Jancarik J, Koshland DE, Kim SH. Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand Science. 254: 1342-1347. PMID 1660187 DOI: 10.1126/Science.1660187 |
0.766 |
|
| 1991 |
Jancarik J, Scott WG, Milligan DL, Koshland DE, Kim SH. Crystallization and preliminary X-ray diffraction study of the ligand-binding domain of the bacterial chemotaxis-mediating aspartate receptor of Salmonella typhimurium Journal of Molecular Biology. 221: 31-34. PMID 1656050 DOI: 10.1016/0022-2836(91)80198-4 |
0.653 |
|
| 1991 |
Jancarik J, Kim S. Sparse matrix sampling: a screening method for crystallization of proteins Journal of Applied Crystallography. 24: 409-411. DOI: 10.1107/S0021889891004430 |
0.363 |
|
| 1990 |
Milburn MV, Tong L, deVos AM, Brünger A, Yamaizumi Z, Nishimura S, Kim SH. Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins. Science (New York, N.Y.). 247: 939-45. PMID 2406906 DOI: 10.1126/Science.2406906 |
0.587 |
|
| 1990 |
Muskal SM, Holbrook SR, Kim S. Prediction of the disulfide-bonding state of cysteine in proteins Protein Engineering. 3: 667-672. PMID 2217140 DOI: 10.1093/Protein/3.8.667 |
0.308 |
|
| 1990 |
Holbrook SR, Muskal SM, Kim S. Predicting surface exposure of amino acids from protein sequence. Protein Engineering. 3: 659-665. PMID 2217139 DOI: 10.1093/Protein/3.8.659 |
0.327 |
|
| 1990 |
Schafer WR, Trueblood CE, Yang CC, Mayer MP, Rosenberg S, Poulter CD, Kim SH, Rine J. Enzymatic coupling of cholesterol intermediates to a mating pheromone precursor and to the ras protein. Science (New York, N.Y.). 249: 1133-9. PMID 2204115 DOI: 10.1126/Science.2204115 |
0.333 |
|
| 1990 |
Brünger AT, Milburn MV, Tong L, deVos AM, Jancarik J, Yamaizumi Z, Nishimura S, Ohtsuka E, Kim SH. Crystal structure of an active form of RAS protein, a complex of a GTP analog and the HRAS p21 catalytic domain. Proceedings of the National Academy of Sciences of the United States of America. 87: 4849-53. PMID 2191303 DOI: 10.1073/Pnas.87.12.4849 |
0.61 |
|
| 1989 |
Kim S, Vos Ad, Ogata C. Crystal structures of two intensely sweet proteins. Trends in Biochemical Sciences. 13: 13-15. PMID 3072690 DOI: 10.1016/0968-0004(88)90011-4 |
0.456 |
|
| 1989 |
Kim S, Kang C, Kim R, Cho JM, Lee Y, Lee T. Redesigning a sweet protein: increased stability and renaturability. Protein Engineering. 2: 571-575. PMID 2813335 DOI: 10.1093/Protein/2.8.571 |
0.386 |
|
| 1989 |
Glaeser RM, Tong L, Kim SH. Three-dimensional reconstructions from incomplete data: interpretability of density maps at "atomic" resolution. Ultramicroscopy. 27: 307-18. PMID 2749922 DOI: 10.1016/0304-3991(89)90021-1 |
0.493 |
|
| 1989 |
Kang C, Kim SH, Nikaido K, Gokcen S, Ames GFL. Crystallization and preliminary X-ray studies of HisJ and LAO periplasmic proteins from Salmonella typhimurium Journal of Molecular Biology. 207: 643-644. PMID 2668538 DOI: 10.1016/0022-2836(89)90475-0 |
0.356 |
|
| 1989 |
Tong L, Milburn MV, de Vos AM, Kim SH. Structure of ras proteins. Science (New York, N.Y.). 245: 244. PMID 2665078 DOI: 10.1126/Science.2665078 |
0.493 |
|
| 1989 |
Holbrook SR, Kim S. Molecular model of the G protein alpha subunit based on the crystal structure of the HRAS protein Proceedings of the National Academy of Sciences of the United States of America. 86: 1751-1755. PMID 2494654 DOI: 10.1073/Pnas.86.6.1751 |
0.371 |
|
| 1988 |
Kim SH, Cech TR. Three-dimensional model of the active site of the self-splicing rRNA precursor of Tetrahymena. Proceedings of the National Academy of Sciences of the United States of America. 84: 8788-92. PMID 3480510 DOI: 10.1073/Pnas.84.24.8788 |
0.372 |
|
| 1988 |
Holbrook SR, Wang AH, Rich A, Kim SH. Local mobility of nucleic acids as determined from crystallographic data. III. A daunomycin-DNA complex. Journal of Molecular Biology. 199: 349-57. PMID 3351928 DOI: 10.1016/0022-2836(88)90318-X |
0.508 |
|
| 1988 |
Pearlman DA, Kim SH. Conformational studies of nucleic acids. V. Sequence specificities in the conformational energetics of oligonucleotides: the homo-tetramers Biopolymers - Peptide Science Section. 27: 59-77. PMID 3342278 DOI: 10.1002/Bip.360270105 |
0.305 |
|
| 1988 |
de Vos AM, Tong L, Milburn MV, Matias PM, Jancarik J, Noguchi S, Nishimura S, Miura K, Ohtsuka E, Kim SH. Three-dimensional structure of an oncogene protein: catalytic domain of human c-H-ras p21. Science (New York, N.Y.). 239: 888-93. PMID 2448879 DOI: 10.1126/Science.2448879 |
0.594 |
|
| 1988 |
Lu T, Young T, Schachman H, Kim S. Preliminary Results on the Crystal and Molecular Structure of Native and Mutant Aspartate Carbamoyltransferase at Neutral pH Journal of the Chinese Chemical Society. 35: 315-319. DOI: 10.1002/Jccs.198800047 |
0.34 |
|
| 1987 |
Terwilliger TC, Kim S, Eisenberg D. Generalized method of determining heavy-atom positions using the difference Patterson function Acta Crystallographica Section a Foundations of Crystallography. 43: 1-5. DOI: 10.1107/S0108767387099999 |
0.432 |
|
| 1986 |
Holbrook SR, Wang AH, Rich A, Kim SH. Local mobility of nucleic acids as determined from crystallographic data. II. Z-form DNA. Journal of Molecular Biology. 187: 429-40. PMID 3701869 DOI: 10.1016/0022-2836(86)90443-2 |
0.46 |
|
| 1986 |
Pearlman DA, Kim SH. Conformational studies of nucleic acids: Iv. the conformational energetics of oligonucleotides:D(apapapa) and apapapa Journal of Biomolecular Structure and Dynamics. 4: 69-97. PMID 2482750 DOI: 10.1080/07391102.1986.10507647 |
0.304 |
|
| 1985 |
de Vos AM, Hatada M, van der Wel H, Krabbendam H, Peerdeman AF, Kim SH. Three-dimensional structure of thaumatin I, an intensely sweet protein. Proceedings of the National Academy of Sciences of the United States of America. 82: 1406-9. PMID 3856268 DOI: 10.1073/Pnas.82.5.1406 |
0.402 |
|
| 1982 |
Peckler S, Graves B, Kanne D, Rapoport H, Hearst JE, Kim SH. Structure of a psoralen-thymine monoadduct formed in photoreaction with DNA. Journal of Molecular Biology. 162: 157-72. PMID 7154093 DOI: 10.1016/0022-2836(82)90166-8 |
0.342 |
|
| 1981 |
Holbrook SR, Sussman JL, Kim SH. Absence of correlation between base-pair sequence and RNA conformation. Science (New York, N.Y.). 212: 1275-7. PMID 6165084 DOI: 10.1126/Science.6165084 |
0.527 |
|
| 1980 |
Boyle J, Robillard GT, Kim SH. Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5′ end Journal of Molecular Biology. 139: 601-625. PMID 6997498 DOI: 10.1016/0022-2836(80)90051-0 |
0.411 |
|
| 1979 |
Kim S, Quigley GJ. Determination of a transfer RNA structure by crystallographic method. Methods in Enzymology. 59: 3-21. PMID 374944 DOI: 10.1016/0076-6879(79)59070-3 |
0.384 |
|
| 1978 |
Warrant RW, Kim S. α-Helix–double helix interaction shown in the structure of a protamine-transfer RNA complex and a nucleoprotamine model Nature. 271: 130-135. PMID 622153 DOI: 10.1038/271130A0 |
0.384 |
|
| 1978 |
Holbrook SR, Sussman JL, Warrant RW, Kim SH. Crystal structure of yeast phenylalanine transfer RNA. II. Structural features and functional implications. Journal of Molecular Biology. 123: 631-60. PMID 357743 DOI: 10.1016/0022-2836(78)90210-3 |
0.59 |
|
| 1978 |
Kim SH. Three-dimensional structure of transfer RNA and its functional implications Advances in Enzymology and Related Areas of Molecular Biology. 46: 279-315. PMID 205095 DOI: 10.1002/9780470122914.Ch4 |
0.311 |
|
| 1977 |
Holbrook SR, Sussman JL, Warrant RW, Church GM, Kim SH. RNA-ligant interactions. (I) Magnesium binding sites in yeast tRNAPhe. Nucleic Acids Research. 4: 2811-20. PMID 333395 DOI: 10.1093/Nar/4.8.2811 |
0.588 |
|
| 1977 |
Church GM, Sussman JL, Kim SH. Secondary structural complementarity between DNA and proteins. Proceedings of the National Academy of Sciences of the United States of America. 74: 1458-62. PMID 266187 DOI: 10.1073/Pnas.74.4.1458 |
0.605 |
|
| 1976 |
Sussman JL, Kim SH. Idealized atomic coordinates of yeast phenylalanine transfer RNA. Biochemical and Biophysical Research Communications. 68: 89-96. PMID 1108880 DOI: 10.1016/0006-291X(76)90014-0 |
0.507 |
|
| 1976 |
Sussman JL, Kim S. Three-dimensional structure of a transfer rna in two crystal forms. Science (New York, N.Y.). 192: 853-8. PMID 775636 DOI: 10.1126/Science.775636 |
0.548 |
|
| 1976 |
Kim SH, Sussman JL. pi turn is a conformational pattern in RNA loops and bends. Nature. 260: 645-6. PMID 772447 DOI: 10.1038/260645A0 |
0.48 |
|
| 1969 |
Kim SH, Rich A. A non-complementary hydrogen-bonded complex containing 5-fluorouracil and 1-methylcytosine. Journal of Molecular Biology. 42: 87-95. PMID 5808551 DOI: 10.1016/0022-2836(69)90488-4 |
0.441 |
|
| 1969 |
Kim SH, Rich A. Crystalline transfer RNA: the three-dimensional Patterson function at 12-angstrom resolution. Science (New York, N.Y.). 166: 1621-4. PMID 5360582 DOI: 10.1126/Science.166.3913.1621 |
0.494 |
|
| 1969 |
Kim SH, Schofield P, Rich A. Transfer RNA crystals studied by x-ray diffraction. Cold Spring Harbor Symposia On Quantitative Biology. 34: 153-7. PMID 4909493 DOI: 10.1101/Sqb.1969.034.01.022 |
0.459 |
|
| 1968 |
Kim SH, Rich A. The structure of a crystalline complex containing one phenobarbital molecule and two adenine derivatives. Proceedings of the National Academy of Sciences of the United States of America. 60: 402-8. PMID 16591644 DOI: 10.1073/Pnas.60.2.402 |
0.501 |
|
| 1968 |
Kim SH, Rich A. Single crystals of transfer RNA: an x-ray diffraction study. Science (New York, N.Y.). 162: 1381-4. PMID 4880852 DOI: 10.1126/Science.162.3860.1381 |
0.486 |
|
| 1967 |
Kim SH, Rich A. Crystal structure of the 1: 1 complex of 5-fluorouracil and 9-ethylhypoxanthine. Science (New York, N.Y.). 158: 1046-8. PMID 6054481 DOI: 10.1126/Science.158.3804.1046 |
0.518 |
|
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