Year |
Citation |
Score |
2016 |
Morales J, Kokkori S, Weidauer D, Chapman J, Goltsman E, Rokhsar D, Grossman AR, Nowack EC. Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei. Bmc Evolutionary Biology. 16: 247. PMID 27835948 DOI: 10.1186/S12862-016-0820-Z |
0.575 |
|
2016 |
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840 |
0.83 |
|
2015 |
Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, et al. A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology. 16: 26. PMID 25637298 DOI: 10.1186/S13059-015-0582-8 |
0.723 |
|
2015 |
Lowry DB, Hernandez K, Taylor SH, Meyer E, Logan TL, Barry KW, Chapman JA, Rokhsar DS, Schmutz J, Juenger TE. The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii. The New Phytologist. 205: 402-14. PMID 25252269 DOI: 10.1111/Nph.13027 |
0.561 |
|
2014 |
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, ... ... Chapman J, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/Nbt.2906 |
0.712 |
|
2014 |
Lukaszewski AJ, Alberti A, Sharpe A, Kilian A, Stanca AM, Keller B, Clavijo BJ, Friebe B, Gill B, Wulff B, Chapman B, Steuernagel B, Feuillet C, Viseux C, Pozniak C, ... ... Chapman J, et al. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Science. 345. DOI: 10.1126/science.1251788 |
0.695 |
|
2014 |
Georganas E, Buluç A, Chapman J, Oliker L, Rokhsar D, Yelick K. Parallel de Bruijn Graph Construction and Traversal for de Novo Genome Assembly International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. 2015: 437-448. DOI: 10.1109/SC.2014.41 |
0.619 |
|
2014 |
Strnadová V, Buluc A, Chapman J, Gilbert JR, Gonzalez J, Jegelka S, Rokhsar D, Oliker L. Efficient and accurate clustering for large-scale genetic mapping Proceedings - 2014 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2014. 3-10. DOI: 10.1109/BIBM.2014.6999119 |
0.438 |
|
2013 |
Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-AmatriaÃn M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, et al. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal : For Cell and Molecular Biology. 76: 718-27. PMID 23998490 DOI: 10.1111/Tpj.12319 |
0.753 |
|
2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.739 |
|
2013 |
Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Chapman J, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669 |
0.708 |
|
2013 |
Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, et al. Insights into bilaterian evolution from three spiralian genomes. Nature. 493: 526-31. PMID 23254933 DOI: 10.1038/Nature11696 |
0.835 |
|
2011 |
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Chapman JA, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111 |
0.677 |
|
2011 |
Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/Journal.Pone.0023501 |
0.702 |
|
2010 |
Ingle JN, Schaid DJ, Goss PE, Liu M, Mushiroda T, Chapman JA, Kubo M, Jenkins GD, Batzler A, Shepherd L, Pater J, Wang L, Ellis MJ, Stearns V, Rohrer DC, et al. Genome-wide associations and functional genomic studies of musculoskeletal adverse events in women receiving aromatase inhibitors. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 28: 4674-82. PMID 20876420 DOI: 10.1200/Jco.2010.28.5064 |
0.367 |
|
2010 |
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466: 720-6. PMID 20686567 DOI: 10.1038/Nature09201 |
0.838 |
|
2010 |
Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, Hellsten U, Chapman J, Simakov O, Rensing SA, Terry A, et al. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (New York, N.Y.). 329: 223-6. PMID 20616280 DOI: 10.1126/Science.1188800 |
0.653 |
|
2010 |
Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, et al. The dynamic genome of Hydra. Nature. 464: 592-6. PMID 20228792 DOI: 10.1038/Nature08830 |
0.833 |
|
2010 |
Fritz-Laylin LK, Prochnik SE, Ginger ML, Dacks JB, Carpenter ML, Field MC, Kuo A, Paredez A, Chapman J, Pham J, Shu S, Neupane R, Cipriano M, Mancuso J, Tu H, et al. The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell. 140: 631-42. PMID 20211133 DOI: 10.1016/J.Cell.2010.01.032 |
0.773 |
|
2010 |
Srivastava M, Larroux C, Lu DR, Mohanty K, Chapman J, Degnan BM, Rokhsar DS. Early evolution of the LIM homeobox gene family. Bmc Biology. 8: 4. PMID 20082688 DOI: 10.1186/1741-7007-8-4 |
0.65 |
|
2009 |
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, ... ... Chapman J, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 457: 551-6. PMID 19189423 DOI: 10.1038/Nature07723 |
0.759 |
|
2008 |
Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, Lapidus A, Rokhsar DS, Lebrilla CB, German JB, Price NP, Richardson PM, Mills DA. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proceedings of the National Academy of Sciences of the United States of America. 105: 18964-9. PMID 19033196 DOI: 10.1073/Pnas.0809584105 |
0.65 |
|
2008 |
Smith DR, Quinlan AR, Peckham HE, Makowsky K, Tao W, Woolf B, Shen L, Donahue WF, Tusneem N, Stromberg MP, Stewart DA, Zhang L, Ranade SS, Warner JB, Lee CC, ... ... Chapman J, et al. Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Research. 18: 1638-42. PMID 18775913 DOI: 10.1101/Gr.077776.108 |
0.624 |
|
2008 |
Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, et al. The Trichoplax genome and the nature of placozoans. Nature. 454: 955-60. PMID 18719581 DOI: 10.1038/Nature07191 |
0.85 |
|
2008 |
Hwang JS, Takaku Y, Chapman J, Ikeo K, David CN, Gojobori T. Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes. Molecular Biology and Evolution. 25: 2009-17. PMID 18635678 DOI: 10.1093/Molbev/Msn154 |
0.532 |
|
2008 |
King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature. 451: 783-8. PMID 18273011 DOI: 10.1038/Nature06617 |
0.823 |
|
2007 |
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (New York, N.Y.). 317: 86-94. PMID 17615350 DOI: 10.1126/Science.1139158 |
0.834 |
|
2006 |
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, ... ... Chapman J, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (New York, N.Y.). 313: 1596-604. PMID 16973872 DOI: 10.1126/Science.1128691 |
0.819 |
|
2006 |
Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, Arredondo FD, Baxter L, Bensasson D, Beynon JL, Chapman J, Damasceno CM, Dorrance AE, Dou D, Dickerman AW, et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science (New York, N.Y.). 313: 1261-6. PMID 16946064 DOI: 10.1126/Science.1128796 |
0.816 |
|
2004 |
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nature Biotechnology. 22: 695-700. PMID 15122302 DOI: 10.1038/Nbt967 |
0.72 |
|
2004 |
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/Nature02340 |
0.717 |
|
2003 |
Richardson PM, Chapman J. The Xenopus tropicalis genome project Current Genomics. 4: 645-652. DOI: 10.2174/1389202033490088 |
0.442 |
|
2002 |
Detter JC, Jett JM, Lucas SM, Dalin E, Arellano AR, Wang M, Nelson JR, Chapman J, Lou Y, Rokhsar D, Hawkins TL, Richardson PM. Isothermal strand-displacement amplification applications for high-throughput genomics Genomics. 80: 691-698. PMID 12523365 DOI: 10.1006/Geno.2002.7020 |
0.68 |
|
2002 |
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/Science.1080049 |
0.769 |
|
2002 |
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, Gelpke MD, Roach J, Oh T, Ho IY, Wong M, et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (New York, N.Y.). 297: 1301-10. PMID 12142439 DOI: 10.1126/Science.1072104 |
0.765 |
|
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