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Martin Denis Caffrey - Publications

Affiliations: 
1988- Ohio State University, Columbus, Columbus, OH 
 2003- University of Limerick, Limerick, Ireland 
Area:
General Biophysics
Website:
https://www.tcd.ie/Biochemistry/research/m_caffrey.php

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Zhou XE, Gao X, Barty A, Kang Y, He Y, Liu W, Ishchenko A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Suino-Powell KM, Boutet S, Williams GJ, ... ... Caffrey M, et al. X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex. Scientific Data. 3: 160021. PMID 27070998 DOI: 10.1038/sdata.2016.21  0.56
2016 Vogeley L, El Arnaout T, Bailey J, Stansfeld PJ, Boland C, Caffrey M. Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin. Science (New York, N.Y.). 351: 876-80. PMID 26912896 DOI: 10.1126/science.aad3747  0.56
2015 Li D, Stansfeld PJ, Sansom MS, Keogh A, Vogeley L, Howe N, Lyons JA, Aragao D, Fromme P, Fromme R, Basu S, Grotjohann I, Kupitz C, Rendek K, Weierstall U, ... ... Caffrey M, et al. Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nature Communications. 6: 10140. PMID 26673816 DOI: 10.1038/ncomms10140  0.56
2015 Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, ... ... Caffrey M, et al. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature. PMID 26200343 DOI: 10.1038/nature14656  0.56
2015 Stansfeld PJ, Goose JE, Caffrey M, Carpenter EP, Parker JL, Newstead S, Sansom MS. MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes. Structure (London, England : 1993). 23: 1350-61. PMID 26073602 DOI: 10.1016/j.str.2015.05.006  0.56
2015 Fowler PW, Orwick-Rydmark M, Radestock S, Solcan N, Dijkman PM, Lyons JA, Kwok J, Caffrey M, Watts A, Forrest LR, Newstead S. Gating topology of the proton-coupled oligopeptide symporters. Structure (London, England : 1993). 23: 290-301. PMID 25651061 DOI: 10.1016/j.str.2014.12.012  0.56
2015 Caffrey M. A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes. Acta Crystallographica. Section F, Structural Biology Communications. 71: 3-18. PMID 25615961 DOI: 10.1107/S2053230X14026843  0.56
2015 Li D, Pye VE, Caffrey M. Experimental phasing for structure determination using membrane-protein crystals grown by the lipid cubic phase method. Acta Crystallographica. Section D, Biological Crystallography. 71: 104-22. PMID 25615865 DOI: 10.1107/S1399004714010360  0.56
2015 Weinert T, Olieric V, Waltersperger S, Panepucci E, Chen L, Zhang H, Zhou D, Rose J, Ebihara A, Kuramitsu S, Li D, Howe N, Schnapp G, Pautsch A, Bargsten K, ... ... Caffrey M, et al. Fast native-SAD phasing for routine macromolecular structure determination. Nature Methods. 12: 131-3. PMID 25506719 DOI: 10.1038/nmeth.3211  0.56
2014 Takeda H, Hattori M, Nishizawa T, Yamashita K, Shah ST, Caffrey M, Maturana AD, Ishitani R, Nureki O. Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg2+ channel MgtE. Nature Communications. 5: 5374. PMID 25367295 DOI: 10.1038/ncomms6374  0.56
2014 Nji E, Li D, Doyle DA, Caffrey M. Cloning, expression, purification, crystallization and preliminary X-ray diffraction of a lysine-specific permease from Pseudomonas aeruginosa. Acta Crystallographica. Section F, Structural Biology Communications. 70: 1362-7. PMID 25286940 DOI: 10.1107/S2053230X14017865  0.56
2014 Tan J, Rouse SL, Li D, Pye VE, Vogeley L, Brinth AR, El Arnaout T, Whitney JC, Howell PL, Sansom MS, Caffrey M. A conformational landscape for alginate secretion across the outer membrane of Pseudomonas aeruginosa. Acta Crystallographica. Section D, Biological Crystallography. 70: 2054-68. PMID 25084326 DOI: 10.1107/S1399004714001850  0.56
2014 Li D, Caffrey M. Renaturing membrane proteins in the lipid cubic phase, a nanoporous membrane mimetic. Scientific Reports. 4: 5806. PMID 25055873 DOI: 10.1038/srep05806  0.56
2014 Boland C, Li D, Shah ST, Haberstock S, Dötsch V, Bernhard F, Caffrey M. Cell-free expression and in meso crystallisation of an integral membrane kinase for structure determination. Cellular and Molecular Life Sciences : Cmls. 71: 4895-910. PMID 25012698 DOI: 10.1007/s00018-014-1655-7  0.56
2014 Lyons JA, Parker JL, Solcan N, Brinth A, Li D, Shah ST, Caffrey M, Newstead S. Structural basis for polyspecificity in the POT family of proton-coupled oligopeptide transporters. Embo Reports. 15: 886-93. PMID 24916388 DOI: 10.15252/embr.201338403  0.56
2014 Li D, Howe N, Dukkipati A, Shah ST, Bax BD, Edge C, Bridges A, Hardwicke P, Singh OM, Giblin G, Pautsch A, Pfau R, Schnapp G, Wang M, Olieric V, ... Caffrey M, et al. Crystallizing Membrane Proteins in the Lipidic Mesophase. Experience with Human Prostaglandin E2 Synthase 1 and an Evolving Strategy. Crystal Growth & Design. 14: 2034-2047. PMID 24803849 DOI: 10.1021/cg500157x  0.56
2014 Weierstall U, James D, Wang C, White TA, Wang D, Liu W, Spence JC, Bruce Doak R, Nelson G, Fromme P, Fromme R, Grotjohann I, Kupitz C, Zatsepin NA, Liu H, ... ... Caffrey M, et al. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nature Communications. 5: 3309. PMID 24525480 DOI: 10.1038/ncomms4309  0.56
2013 Liu W, Wacker D, Gati C, Han GW, James D, Wang D, Nelson G, Weierstall U, Katritch V, Barty A, Zatsepin NA, Li D, Messerschmidt M, Boutet S, Williams GJ, ... ... Caffrey M, et al. Serial femtosecond crystallography of G protein-coupled receptors. Science (New York, N.Y.). 342: 1521-4. PMID 24357322 DOI: 10.1126/science.1244142  0.56
2013 Li D, Lyons JA, Pye VE, Vogeley L, Aragão D, Kenyon CP, Shah ST, Doherty C, Aherne M, Caffrey M. Crystal structure of the integral membrane diacylglycerol kinase. Nature. 497: 521-4. PMID 23676677 DOI: 10.1038/nature12179  0.56
2012 Aherne M, Lyons JA, Caffrey M. A fast, simple and robust protocol for growing crystals in the lipidic cubic phase. Journal of Applied Crystallography. 45: 1330-1333. PMID 23162163 DOI: 10.1107/S0021889812037880  0.56
2012 Khelashvili G, Albornoz PBC, Johner N, Mondal S, Caffrey M, Weinstein H. Why GPCRs behave differently in cubic and lamellar lipidic mesophases Journal of the American Chemical Society. 134: 15858-15868. PMID 22931253 DOI: 10.1021/ja3056485  0.56
2012 Caffrey M, Li D, Dukkipati A. Membrane protein structure determination using crystallography and lipidic mesophases: recent advances and successes. Biochemistry. 51: 6266-88. PMID 22783824 DOI: 10.1021/bi300010w  0.56
2012 Lyons JA, Aragão D, Slattery O, Pisliakov AV, Soulimane T, Caffrey M. Structural insights into electron transfer in caa3-type cytochrome oxidase. Nature. 487: 514-8. PMID 22763450 DOI: 10.1038/nature11182  0.56
2011 Höfer N, Aragão D, Lyons JA, Caffrey M. Membrane Protein Crystallization in Lipidic Mesophases. Hosting lipid affects on the crystallization and structure of a transmembrane peptide. Crystal Growth & Design. 11: 1182-1192. PMID 22933857 DOI: 10.1021/cg101384p  0.56
2011 Stepanov S, Hilgart M, Yoder DW, Makarov O, Becker M, Sanishvili R, Ogata CM, Venugopalan N, Aragão D, Caffrey M, Smith JL, Fischetti RF. Fast fluorescence techniques for crystallography beamlines. Journal of Applied Crystallography. 44: 772-778. PMID 21808424 DOI: 10.1107/S0021889811016748  0.56
2011 Rasmussen SG, DeVree BT, Zou Y, Kruse AC, Chung KY, Kobilka TS, Thian FS, Chae PS, Pardon E, Calinski D, Mathiesen JM, Shah ST, Lyons JA, Caffrey M, Gellman SH, et al. Crystal structure of the β2 adrenergic receptor-Gs protein complex. Nature. 477: 549-55. PMID 21772288 DOI: 10.1038/nature10361  0.56
2011 Li D, Lee J, Caffrey M. Crystallizing Membrane Proteins in Lipidic Mesophases. A Host Lipid Screen. Crystal Growth & Design. 11: 530-537. PMID 21743796 DOI: 10.1021/cg101378s  0.56
2011 Caffrey M. Crystallizing membrane proteins for structure-function studies using lipidic mesophases. Biochemical Society Transactions. 39: 725-32. PMID 21599641 DOI: 10.1042/BST0390725  0.56
2011 Li D, Caffrey M. Lipid cubic phase as a membrane mimetic for integral membrane protein enzymes. Proceedings of the National Academy of Sciences of the United States of America. 108: 8639-44. PMID 21555546 DOI: 10.1073/pnas.1101815108  0.56
2011 Rosenbaum DM, Zhang C, Lyons JA, Holl R, Aragao D, Arlow DH, Rasmussen SG, Choi HJ, Devree BT, Sunahara RK, Chae PS, Gellman SH, Dror RO, Shaw DE, Weis WI, ... Caffrey M, et al. Structure and function of an irreversible agonist-β(2) adrenoceptor complex. Nature. 469: 236-40. PMID 21228876 DOI: 10.1038/nature09665  0.56
2010 Caffrey M, Porter C. Crystallizing membrane proteins for structure determination using lipidic mesophases. Journal of Visualized Experiments : Jove. PMID 21113125 DOI: 10.3791/1712  0.56
2010 Höfer N, Aragão D, Caffrey M. Crystallizing transmembrane peptides in lipidic mesophases. Biophysical Journal. 99: L23-5. PMID 20682243 DOI: 10.1016/j.bpj.2010.05.011  0.56
2010 Luan B, Carr R, Caffrey M, Aksimentiev A. The effect of calcium on the conformation of cobalamin transporter BtuB. Proteins. 78: 1153-62. PMID 19927326 DOI: 10.1002/prot.22635  0.56
2009 Caffrey M, Cherezov V. Crystallizing membrane proteins using lipidic mesophases. Nature Protocols. 4: 706-31. PMID 19390528 DOI: 10.1038/nprot.2009.31  0.4
2009 Caffrey M. Crystallizing membrane proteins for structure determination: use of lipidic mesophases. Annual Review of Biophysics. 38: 29-51. PMID 19086821 DOI: 10.1146/annurev.biophys.050708.133655  0.56
2008 Cherezov V, Höfer N, Szebenyi DM, Kolaj O, Wall JG, Gillilan R, Srinivasan V, Jaroniec CP, Caffrey M. Insights into the mode of action of a putative zinc transporter CzrB in Thermus thermophilus. Structure (London, England : 1993). 16: 1378-88. PMID 18786400 DOI: 10.1016/j.str.2008.05.014  0.56
2008 Cherezov V, Liu W, Derrick JP, Luan B, Aksimentiev A, Katritch V, Caffrey M. In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin. Proteins. 71: 24-34. PMID 18076035 DOI: 10.1002/prot.21841  0.56
2007 Cherezov V, Caffrey M. Membrane protein crystallization in lipidic mesophases. A mechanism study using X-ray microdiffraction. Faraday Discussions. 136: 195-212; discussion . PMID 17955811 DOI: 10.1039/b618173b  0.56
2007 Luan B, Caffrey M, Aksimentiev A. Structure refinement of the OpcA adhesin using molecular dynamics. Biophysical Journal. 93: 3058-69. PMID 17938421 DOI: 10.1529/biophysj.107.106724  0.56
2007 Höfer N, Kolaj O, Li H, Cherezov V, Gillilan R, Wall JG, Caffrey M. Crystallization and preliminary X-ray diffraction analysis of a soluble domain of the putative zinc transporter CzrB from Thermus thermophilus. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 673-7. PMID 17671365 DOI: 10.1107/S1744309107032277  0.4
2006 Teeters-Kennedy SM, Rodriguez KR, Rogers TM, Zomchek KA, Williams SM, Sudnitsyn A, Carter L, Cherezov V, Caffrey M, Coe JV. Controlling the passage of light through metal microchannels by nanocoatings of phospholipids. The Journal of Physical Chemistry. B. 110: 21719-27. PMID 17064131 DOI: 10.1021/jp062201g  0.56
2006 Liu W, Caffrey M. Interactions of tryptophan, tryptophan peptides, and tryptophan alkyl esters at curved membrane interfaces. Biochemistry. 45: 11713-26. PMID 17002272 DOI: 10.1021/bi0608414  0.56
2006 Shaikh SR, Cherezov V, Caffrey M, Soni SP, LoCascio D, Stillwell W, Wassall SR. Molecular organization of cholesterol in unsaturated phosphatidylethanolamines: X-ray diffraction and solid state 2H NMR reveal differences with phosphatidylcholines. Journal of the American Chemical Society. 128: 5375-83. PMID 16620109 DOI: 10.1021/ja057949b  0.56
2006 Cherezov V, Clogston J, Papiz MZ, Caffrey M. Room to move: crystallizing membrane proteins in swollen lipidic mesophases. Journal of Molecular Biology. 357: 1605-18. PMID 16490208 DOI: 10.1016/j.jmb.2006.01.049  0.56
2004 Misquitta LV, Misquitta Y, Cherezov V, Slattery O, Mohan JM, Hart D, Zhalnina M, Cramer WA, Caffrey M. Membrane protein crystallization in lipidic mesophases with tailored bilayers Structure. 12: 2113-2124. PMID 15576026 DOI: 10.1016/j.str.2004.09.020  0.56
2004 Wassall SR, Brzustowicz MR, Shaikh SR, Cherezov V, Caffrey M, Stillwell W. Order from disorder, corralling cholesterol with chaotic lipids. The role of polyunsaturated lipids in membrane raft formation. Chemistry and Physics of Lipids. 132: 79-88. PMID 15530450 DOI: 10.1016/j.chemphyslip.2004.09.007  0.56
2004 Misquitta Y, Cherezov V, Havas F, Patterson S, Mohan JM, Wells AJ, Hart DJ, Caffrey M. Rational design of lipid for membrane protein crystallization. Journal of Structural Biology. 148: 169-75. PMID 15477097 DOI: 10.1016/j.jsb.2004.06.008  0.56
2004 Cherezov V, Peddi A, Muthusubramaniam L, Zheng YF, Caffrey M. A robotic system for crystallizing membrane and soluble proteins in lipidic mesophases. Acta Crystallographica. Section D, Biological Crystallography. 60: 1795-807. PMID 15388926 DOI: 10.1107/S0907444904019109  0.56
2003 Shaikh SR, Cherezov V, Caffrey M, Stillwell W, Wassall SR. Interaction of cholesterol with a docosahexaenoic acid-containing phosphatidylethanolamine: trigger for microdomain/raft formation? Biochemistry. 42: 12028-37. PMID 14556634 DOI: 10.1021/bi034931+  0.56
2003 Caffrey M. Membrane protein crystallization. Journal of Structural Biology. 142: 108-32. PMID 12718924 DOI: 10.1016/S1047-8477(03)00043-1  0.56
2002 Cherezov V, Clogston J, Misquitta Y, Abdel-Gawad W, Caffrey M. Membrane protein crystallization in meso: lipid type-tailoring of the cubic phase. Biophysical Journal. 83: 3393-407. PMID 12496106 DOI: 10.1016/S0006-3495(02)75339-3  0.56
2002 Cherezov V, Riedl KM, Caffrey M. Too hot to handle? Synchrotron X-ray damage of lipid membranes and mesophases. Journal of Synchrotron Radiation. 9: 333-41. PMID 12409619 DOI: 10.1107/S0909049502014528  0.56
2002 Brzustowicz MR, Cherezov V, Zerouga M, Caffrey M, Stillwell W, Wassall SR. Controlling membrane cholesterol content. A role for polyunsaturated (docosahexaenoate) phospholipids. Biochemistry. 41: 12509-19. PMID 12369842  0.4
2002 Koynova R, Caffrey M. An index of lipid phase diagrams. Chemistry and Physics of Lipids. 115: 107-219. PMID 12047902 DOI: 10.1016/S0009-3084(01)00200-6  0.56
2002 Cherezov V, Qiu H, Pector V, Vandenbranden M, Ruysschaert JM, Caffrey M. Biophysical and transfection studies of the diC(14)-amidine/DNA complex. Biophysical Journal. 82: 3105-17. PMID 12023234 DOI: 10.1016/S0006-3495(02)75652-X  0.4
2002 Brzustowicz MR, Cherezov V, Caffrey M, Stillwell W, Wassall SR. Molecular organization of cholesterol in polyunsaturated membranes: microdomain formation. Biophysical Journal. 82: 285-98. PMID 11751316 DOI: 10.1016/S0006-3495(02)75394-0  0.4
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