Dawen Cai, Ph.D. - Publications

2007 University of Michigan, Ann Arbor, Ann Arbor, MI 
General Biophysics, Cell Biology

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Li Y, Walker LA, Zhao Y, Edwards EM, Michki NS, Cheng HPJ, Ghazzi M, Chen TY, Chen M, Roossien DH, Cai D. Bitbow Enables Highly Efficient Neuronal Lineage Tracing and Morphology Reconstruction in Single Brains. Frontiers in Neural Circuits. 15: 732183. PMID 34744636 DOI: 10.3389/fncir.2021.732183  1
2021 SenGupta S, Hein LE, Xu Y, Zhang J, Konwerski JR, Li Y, Johnson C, Cai D, Smith JL, Parent CA. Triple-Negative Breast Cancer Cells Recruit Neutrophils by Secreting TGF-β and CXCR2 Ligands. Frontiers in Immunology. 12: 659996. PMID 33912188 DOI: 10.3389/fimmu.2021.659996  0.01
2021 Michki NS, Li Y, Sanjasaz K, Zhao Y, Shen FY, Walker LA, Cao W, Lee CY, Cai D. The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis. Cell Reports. 35: 109039. PMID 33909998 DOI: 10.1016/j.celrep.2021.109039  1
2020 Jiang H, Wang C, Wei B, Gan W, Cai D, Cui M. Long-range remote focusing by image-plane aberration correction. Optics Express. 28: 34008-34014. PMID 33182878 DOI: 10.1364/OE.409225  0.01
2020 Patel PR, Popov P, Caldwell CM, Welle EJ, Egert D, Pettibone JR, Roossien DH, Becker JB, Berke JD, Chestek CA, Cai D. High density carbon fiber arrays for chronic electrophysiology, fast scan cyclic voltammetry, and correlative anatomy. Journal of Neural Engineering. 17: 056029. PMID 33055366 DOI: 10.1088/1741-2552/Abb1F6  1
2020 Egert DG, Pettibone JR, Lemke SM, Patel PR, Caldwell CM, Cai D, Ganguly K, Chestek CA, Berke J. Cellular-scale silicon probes for high-density, precisely-localized neurophysiology. Journal of Neurophysiology. PMID 32965150 DOI: 10.1152/jn.00352.2020  0.01
2020 Shen FY, Harrington MM, Walker LA, Cheng HPJ, Boyden ES, Cai D. Light microscopy based approach for mapping connectivity with molecular specificity. Nature Communications. 11: 4632. PMID 32934230 DOI: 10.1038/s41467-020-18422-8  1
2020 Welle EJ, Patel PR, Woods JE, Petrossians A, Della Valle E, Vega-Medina A, Richie JM, Cai D, Weiland JD, Chestek CA. Ultra-small carbon fiber electrode recording site optimization and improved in vivo chronic recording yield. Journal of Neural Engineering. PMID 32209743 DOI: 10.1088/1741-2552/Ab8343  0.01
2019 Dizaji AS, Walker LA, Cai D. TraceMontage: a Method for Merging Multiple Independent Neuronal Traces. Journal of Neuroscience Methods. 108560. PMID 31874186 DOI: 10.1016/j.jneumeth.2019.108560  1
2019 Veling MW, Li Y, Veling MT, Litts C, Michki N, Liu H, Ye B, Cai D. Identification of Neuronal Lineages in the Drosophila Peripheral Nervous System with a "Digital" Multi-spectral Lineage Tracing System. Cell Reports. 29: 3303-3312.e3. PMID 31801091 DOI: 10.1016/J.Celrep.2019.10.124  0.01
2019 Chung MT, Kurabayashi K, Cai D. Single-cell RT-LAMP mRNA detection by integrated droplet sorting and merging. Lab On a Chip. PMID 31187105 DOI: 10.1039/C9Lc00161A  0.01
2019 Roossien DH, Sadis BV, Yan Y, Webb JM, Min LY, Dizaji AS, Bogart LJ, Mazuski C, Huth RS, Stecher JS, Akula S, Shen F, Li Y, Xiao T, Vandenbrink M, ... ... Cai D, et al. Multispectral tracing in densely labeled mouse brain with nTracer. Bioinformatics (Oxford, England). PMID 30715234 DOI: 10.1093/Bioinformatics/Btz084  1
2018 Hill M, Rios E, Sudhakar SK, Roossien D, Caldwell CM, Cai D, Ahmed O, Lempka S, Chestek CA. Quantitative simulation of extracellular single unit recording from the surface of cortex. Journal of Neural Engineering. PMID 29923502 DOI: 10.1088/1741-2552/Aacdb8  0.01
2017 Roossien DH, Cai D. Imaging Neural Architecture in Brainbow Samples. Methods in Molecular Biology (Clifton, N.J.). 1642: 211-228. PMID 28815503 DOI: 10.1007/978-1-4939-7169-5_14  0.01
2017 Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES. Iterative expansion microscopy. Nature Methods. PMID 28417997 DOI: 10.1038/Nmeth.4261  1
2016 Tillberg PW, Chen F, Piatkevich KD, Zhao Y, Yu CJ, English BP, Gao L, Martorell A, Suk HJ, Yoshida F, DeGennaro EM, Roossien DH, Gong G, Seneviratne U, Tannenbaum SR, ... Cai D, et al. Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies. Nature Biotechnology. PMID 27376584 DOI: 10.1038/Nbt.3625  1
2016 Padzik A, Deshpande P, Hollos P, Franker M, Rannikko EH, Cai D, Prus P, Mågård M, Westerlund N, Verhey KJ, James P, Hoogenraad CC, Coffey ET. KIF5C S176 Phosphorylation Regulates Microtubule Binding and Transport Efficiency in Mammalian Neurons. Frontiers in Cellular Neuroscience. 10: 57. PMID 27013971 DOI: 10.3389/Fncel.2016.00057  1
2015 Flynn DC, Bhagwat AR, Brenner MH, Núñez MF, Mork BE, Cai D, Swanson JA, Ogilvie JP. Pulse-shaping based two-photon FRET stoichiometry. Optics Express. 23: 3353-72. PMID 25836193 DOI: 10.1364/Oe.23.003353  1
2014 Norris SR, Soppina V, Dizaji AS, Schimert KI, Sept D, Cai D, Sivaramakrishnan S, Verhey KJ. A method for multiprotein assembly in cells reveals independent action of kinesins in complex. The Journal of Cell Biology. 207: 393-406. PMID 25365993 DOI: 10.1083/Jcb.201407086  1
2014 Bhagwat AR, Flynn D, Brenner MH, Nunez M, Ogilvie JP, Cai D, Swanson JA. Two-photon fluorescence resonance energy transfer stoichiometry in living cells Conference On Lasers and Electro-Optics Europe - Technical Digest. 2014.  1
2013 Brenner MH, Cai D, Swanson JA, Ogilvie JP. Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser. Optics Express. 21: 17256-64. PMID 23938572 DOI: 10.1364/Oe.21.017256  1
2013 Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR. Improved tools for the Brainbow toolbox. Nature Methods. 10: 540-7. PMID 23866336 DOI: 10.1038/nmeth.2450  1
2013 Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR. Improved tools for the Brainbow toolbox. Nature Methods. 10: 540-7. PMID 23817127 DOI: 10.1038/nmeth.2450  1
2012 Brenner MH, Cai D, Nichols SR, Straight SW, Hoppe AD, Swanson JA, Ogilvie JP. Pulse-shaping multiphoton FRET microscopy. Proceedings of Spie--the International Society For Optical Engineering. 8226. PMID 22737295 DOI: 10.1117/12.909225  1
2010 Cai D, Kaul N, Lionberger TA, Wiener DM, Verhey KJ, Meyhofer E. Recording single motor proteins in the cytoplasm of mammalian cells. Methods in Enzymology. 475: 81-107. PMID 20627154 DOI: 10.1016/S0076-6879(10)75004-7  1
2010 Hammond JW, Blasius TL, Soppina V, Cai D, Verhey KJ. Autoinhibition of the kinesin-2 motor KIF17 via dual intramolecular mechanisms. The Journal of Cell Biology. 189: 1013-25. PMID 20530208 DOI: 10.1083/Jcb.201001057  1
2009 Cai D, McEwen DP, Martens JR, Meyhofer E, Verhey KJ. Single molecule imaging reveals differences in microtubule track selection between Kinesin motors. Plos Biology. 7: e1000216. PMID 19823565 DOI: 10.1371/Journal.Pbio.1000216  1
2009 Qian M, Cai D, Verhey KJ, Tsai B. A lipid receptor sorts polyomavirus from the endolysosome to the endoplasmic reticulum to cause infection. Plos Pathogens. 5: e1000465. PMID 19503604 DOI: 10.1371/Journal.Ppat.1000465  1
2009 Hammond JW, Cai D, Blasius TL, Li Z, Jiang Y, Jih GT, Meyhofer E, Verhey KJ. Mammalian Kinesin-3 motors are dimeric in vivo and move by processive motility upon release of autoinhibition. Plos Biology. 7: e72. PMID 19338388 DOI: 10.1371/Journal.Pbio.1000072  1
2008 Hammond JW, Cai D, Verhey KJ. Tubulin modifications and their cellular functions. Current Opinion in Cell Biology. 20: 71-6. PMID 18226514 DOI: 10.1016/J.Ceb.2007.11.010  1
2007 Cai D, Verhey KJ, Meyhöfer E. Tracking single Kinesin molecules in the cytoplasm of mammalian cells. Biophysical Journal. 92: 4137-44. PMID 17400704 DOI: 10.1529/Biophysj.106.100206  1
2007 Cai D, Hoppe AD, Swanson JA, Verhey KJ. Kinesin-1 structural organization and conformational changes revealed by FRET stoichiometry in live cells. The Journal of Cell Biology. 176: 51-63. PMID 17200416 DOI: 10.1083/Jcb.200605097  1
2007 Blasius TL, Cai D, Jih GT, Toret CP, Verhey KJ. Two binding partners cooperate to activate the molecular motor Kinesin-1. The Journal of Cell Biology. 176: 11-7. PMID 17200414 DOI: 10.1083/Jcb.200605099  1
2006 Reed NA, Cai D, Blasius TL, Jih GT, Meyhofer E, Gaertig J, Verhey KJ. Microtubule acetylation promotes kinesin-1 binding and transport. Current Biology : Cb. 16: 2166-72. PMID 17084703 DOI: 10.1016/J.Cub.2006.09.014  1
2003 Uhler SA, Cai D, Man Y, Figge C, Walter NG. RNA degradation in cell extracts: real-time monitoring by fluorescence resonance energy transfer. Journal of the American Chemical Society. 125: 14230-1. PMID 14624543 DOI: 10.1021/Ja036854B  1
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