| Year |
Citation |
Score |
| 2018 |
Custer GS, Xu H, Matysiak S, Das P. How Hydrophobic Hydration Destabilizes Surfactant Micelle at Low Temperature: A Coarse-grained Simulation Study. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30247911 DOI: 10.1021/Acs.Langmuir.8B01994 |
0.668 |
|
| 2018 |
Arya S, Singh AK, Bhasne K, Dogra P, Datta A, Das P, Mukhopadhyay S. Femtosecond Hydration Map of Intrinsically Disordered α-Synuclein. Biophysical Journal. 114: 2540-2551. PMID 29874605 DOI: 10.1016/J.Bpj.2018.04.028 |
0.447 |
|
| 2018 |
Das P, Matysiak S, Mittal J. Looking at the Disordered Proteins through the Computational Microscope. Acs Central Science. 4: 534-542. PMID 29805999 DOI: 10.1021/Acscentsci.7B00626 |
0.662 |
|
| 2018 |
Mukhopadhyay S, Arya S, Bhasne K, Dogra P, Singh AK, Khan T, Datta A, Das P. Prying into Hydration Water in Amyloidogenic Intrinsically Disordered Proteins Biophysical Journal. 114: 586a. DOI: 10.1016/J.Bpj.2017.11.3209 |
0.39 |
|
| 2017 |
Chakraborty S, Das P. Emergence of Alternative Structures in Amyloid Beta 1-42 Monomeric Landscape by N-terminal Hexapeptide Amyloid Inhibitors. Scientific Reports. 7: 9941. PMID 28855598 DOI: 10.1038/S41598-017-10212-5 |
0.332 |
|
| 2017 |
Kang H, Vázquez FX, Zhang L, Das P, Toledo-Sherman LM, Luan B, Levitt M, Zhou R. Emerging β-sheet rich conformations in super-compact Huntingtin exon-1 mutant structures. Journal of the American Chemical Society. PMID 28609090 DOI: 10.1021/Jacs.7B00838 |
0.427 |
|
| 2017 |
Das P, Chacko AR, Belfort G. Alzheimer's Protective Cross-Interaction between Wild-Type and A2T Variants Alters Aβ42 Dimer Structure. Acs Chemical Neuroscience. 8: 606-618. PMID 28292185 DOI: 10.1021/Acschemneuro.6B00357 |
0.401 |
|
| 2017 |
Custer GS, Das P, Matysiak S. Interplay between Conformational Heterogeneity and Hydration in the Folding Landscape of a Designed 3-Helix Bundle. The Journal of Physical Chemistry. B. PMID 28282142 DOI: 10.1021/Acs.Jpcb.6B12286 |
0.696 |
|
| 2017 |
Das P, Chacko A, Belfort G. Alzheimer's Protective Cross-Interaction Between Wild-Type and A2T Variants Changes Aβ42 Dimer Structure Biophysical Journal. 112: 363. DOI: 10.1016/J.Bpj.2016.11.1969 |
0.392 |
|
| 2016 |
Murray B, Sorci M, Rosenthal J, Lippens J, Isaacson D, Das P, Fabris D, Li S, Belfort G. A2T and A2V Aβ Peptides Exhibit Different Aggregation Kinetics, Primary Nucleation, Morphology, Structure and LTP Inhibition. Proteins. PMID 26799157 DOI: 10.1002/Prot.24995 |
0.353 |
|
| 2015 |
Das P, Murray B, Belfort G. Alzheimer's protective A2T mutation changes the conformational landscape of the Aβ₁₋₄₂ monomer differently than does the A2V mutation. Biophysical Journal. 108: 738-47. PMID 25650940 DOI: 10.1016/J.Bpj.2014.12.013 |
0.369 |
|
| 2014 |
Das P, Kang SG, Temple S, Belfort G. Interaction of amyloid inhibitor proteins with amyloid beta peptides: insight from molecular dynamics simulations. Plos One. 9: e113041. PMID 25422897 DOI: 10.1371/Journal.Pone.0113041 |
0.39 |
|
| 2014 |
Dasgupta A, Udgaonkar JB, Das P. Multistage unfolding of an SH3 domain: an initial urea-filled dry molten globule precedes a wet molten globule with non-native structure. The Journal of Physical Chemistry. B. 118: 6380-92. PMID 24661021 DOI: 10.1021/Jp410019F |
0.499 |
|
| 2013 |
Matysiak S, Das P. Effects of sequence and solvation on the temperature-pressure conformational landscape of proteinlike heteropolymers. Physical Review Letters. 111: 058103. PMID 23952449 DOI: 10.1103/Physrevlett.111.058103 |
0.652 |
|
| 2013 |
Das P, Kapoor D, Halloran KT, Zhou R, Matthews CR. Interplay between drying and stability of a TIM barrel protein: a combined simulation-experimental study. Journal of the American Chemical Society. 135: 1882-90. PMID 23293932 DOI: 10.1021/Ja310544T |
0.4 |
|
| 2013 |
Das P, Belfort G, Temple S. Understanding the Protective Role of Alphab Crystallin, a Molecular Chaperone, in Toxic Amyloid Beta Oligomer Formation at an Atomic Level Biophysical Journal. 104: 391a. DOI: 10.1016/J.Bpj.2012.11.2179 |
0.384 |
|
| 2012 |
Xia Z, Das P, Shakhnovich EI, Zhou R. Collapse of unfolded proteins in a mixture of denaturants. Journal of the American Chemical Society. 134: 18266-74. PMID 23057830 DOI: 10.1021/Ja3031505 |
0.497 |
|
| 2012 |
Das P, Matysiak S. Direct characterization of hydrophobic hydration during cold and pressure denaturation. The Journal of Physical Chemistry. B. 116: 5342-8. PMID 22512347 DOI: 10.1016/J.Bpj.2011.11.2484 |
0.65 |
|
| 2012 |
Das P. Effect of cosolvents on nano-confined water: a molecular dynamics study. Nanoscale. 4: 2931-6. PMID 22441726 DOI: 10.1039/C2Nr30070B |
0.35 |
|
| 2012 |
Das P. Differential Dehydration of Hydrophobic Nanotubes in Aqueous Urea and Guanidinium Chloride Solutions: Implications for Protein Denaturation Mechanism Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3983 |
0.449 |
|
| 2011 |
Das P, King JA, Zhou R. Aggregation of γ-crystallins associated with human cataracts via domain swapping at the C-terminal β-strands. Proceedings of the National Academy of Sciences of the United States of America. 108: 10514-9. PMID 21670251 DOI: 10.1073/Pnas.1019152108 |
0.401 |
|
| 2011 |
Xiu P, Yang Z, Zhou B, Das P, Fang H, Zhou R. Urea-induced drying of hydrophobic nanotubes: comparison of different urea models. The Journal of Physical Chemistry. B. 115: 2988-94. PMID 21384841 DOI: 10.1021/Jp108303Q |
0.465 |
|
| 2010 |
Li J, Das P, Zhou R. Single mutation effects on conformational change and membrane deformation of influenza hemagglutinin fusion peptides. The Journal of Physical Chemistry. B. 114: 8799-806. PMID 20552971 DOI: 10.1021/Jp1029163 |
0.333 |
|
| 2010 |
Das P, Zhou R. Urea-induced drying of carbon nanotubes suggests existence of a dry globule-like transient state during chemical denaturation of proteins. The Journal of Physical Chemistry. B. 114: 5427-30. PMID 20361766 DOI: 10.1021/Jp911444Q |
0.402 |
|
| 2010 |
Das P, King JA, Zhou R. beta-Strand interactions at the domain interface critical for the stability of human lens gammaD-crystallin. Protein Science : a Publication of the Protein Society. 19: 131-40. PMID 19937657 DOI: 10.1002/Pro.296 |
0.457 |
|
| 2008 |
Zhou R, Das P, Royyuru AK. Single mutation induced H3N2 hemagglutinin antibody neutralization: a free energy perturbation study. The Journal of Physical Chemistry. B. 112: 15813-20. PMID 19367871 DOI: 10.1021/Jp805529Z |
0.331 |
|
| 2006 |
Das P, Moll M, Stamati H, Kavraki LE, Clementi C. Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction. Proceedings of the National Academy of Sciences of the United States of America. 103: 9885-90. PMID 16785435 DOI: 10.1073/Pnas.0603553103 |
0.627 |
|
| 2005 |
Wilson CJ, Das P, Clementi C, Matthews KS, Wittung-Stafshede P. The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates. Proceedings of the National Academy of Sciences of the United States of America. 102: 14563-8. PMID 16203983 DOI: 10.1073/Pnas.0505808102 |
0.638 |
|
| 2005 |
Das P, Wilson CJ, Fossati G, Wittung-Stafshede P, Matthews KS, Clementi C. Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. Proceedings of the National Academy of Sciences of the United States of America. 102: 14569-74. PMID 16203982 DOI: 10.1073/Pnas.0505844102 |
0.666 |
|
| 2005 |
Das P, Matysiak S, Clementi C. Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes. Proceedings of the National Academy of Sciences of the United States of America. 102: 10141-6. PMID 16006532 DOI: 10.1073/Pnas.0409471102 |
0.705 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2020 |
Menon S, Sengupta N, Das P. Nanoscale Interplay of Membrane Composition and Amyloid Self-Assembly. The Journal of Physical Chemistry. B. PMID 32551617 DOI: 10.1021/Acs.Jpcb.0C03796 |
0.295 |
|
| 2021 |
Cao Y, Das P, Chenthamarakshan V, Chen PY, Melnyk I, Shen Y. Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design. Proceedings of Machine Learning Research. 139: 1261-1271. PMID 34423306 |
0.294 |
|
| 2014 |
Kang SG, Das P, McGrane SJ, Martin AJ, Huynh T, Royyuru AK, Taylor AJ, Jones PG, Zhou R. Molecular recognition of metabotropic glutamate receptor type 1 (mGluR1): synergistic understanding with free energy perturbation and linear response modeling. The Journal of Physical Chemistry. B. 118: 6393-404. PMID 24635567 DOI: 10.1021/Jp410232J |
0.289 |
|
| 2009 |
Das P, Li J, Royyuru AK, Zhou R. Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity. Journal of Computational Chemistry. 30: 1654-63. PMID 19399777 DOI: 10.1002/Jcc.21274 |
0.284 |
|
| 2013 |
Das P, Xia Z, Zhou R. Collapse of a hydrophobic polymer in a mixture of denaturants. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 4877-82. PMID 23517381 DOI: 10.1021/La3046252 |
0.283 |
|
| 2015 |
Das P, Zafar S. Mechanistic Influence of Nanometer Length-Scale Surface Chemistry on DNA Hybridization. Acs Nano. PMID 26051361 DOI: 10.1016/J.Bpj.2015.11.2200 |
0.28 |
|
| 2018 |
Das P, Chakrabarty S, Chacko A, Murray B, Belfort G. An in Silico Investigation of Amyloid Beta with a Focus on N-Terminus: from Structure to Amyloid Inhibitor Design Biophysical Journal. 114: 580a-581a. DOI: 10.1016/J.Bpj.2017.11.3177 |
0.263 |
|
| 2011 |
Xia Z, Das P, Huynh T, Royyuru AK, Zhou R. Modeling mutations of influenza virus with IBM Blue Gene Ibm Journal of Research and Development. 55: 7:1-7:11. DOI: 10.1147/Jrd.2011.2163276 |
0.252 |
|
| 2023 |
Chenthamarakshan V, Hoffman SC, Owen CD, Lukacik P, Strain-Damerell C, Fearon D, Malla TR, Tumber A, Schofield CJ, Duyvesteyn HME, Dejnirattisai W, Carrique L, Walter TS, Screaton GR, Matviiuk T, ... ... Das P, et al. Accelerating drug target inhibitor discovery with a deep generative foundation model. Science Advances. 9: eadg7865. PMID 37343087 DOI: 10.1126/sciadv.adg7865 |
0.216 |
|
| 2021 |
Das P, Sercu T, Wadhawan K, Padhi I, Gehrmann S, Cipcigan F, Chenthamarakshan V, Strobelt H, Dos Santos C, Chen PY, Yang YY, Tan JPK, Hedrick J, Crain J, Mojsilovic A. Author Correction: Accelerated antimicrobial discovery via deep generative models and molecular dynamics simulations. Nature Biomedical Engineering. PMID 34183803 DOI: 10.1038/s41551-021-00771-4 |
0.206 |
|
| 2021 |
Das P, Sercu T, Wadhawan K, Padhi I, Gehrmann S, Cipcigan F, Chenthamarakshan V, Strobelt H, Dos Santos C, Chen PY, Yang YY, Tan JPK, Hedrick J, Crain J, Mojsilovic A. Accelerated antimicrobial discovery via deep generative models and molecular dynamics simulations. Nature Biomedical Engineering. PMID 33707779 DOI: 10.1038/s41551-021-00689-x |
0.172 |
|
| 2020 |
Saha S, Das P, BoseDasgupta S. "It Takes Two to Tango": Role of Neglected Macrophage Manipulators Coronin 1 and Protein Kinase G in Mycobacterial Pathogenesis. Frontiers in Cellular and Infection Microbiology. 10: 582563. PMID 33194820 DOI: 10.3389/fcimb.2020.582563 |
0.167 |
|
| 2023 |
Litsa EE, Chenthamarakshan V, Das P, Kavraki LE. An end-to-end deep learning framework for translating mass spectra to de-novo molecules. Communications Chemistry. 6: 132. PMID 37353554 DOI: 10.1038/s42004-023-00932-3 |
0.153 |
|
| 2023 |
Scantlebury J, Vost L, Carbery A, Hadfield TE, Turnbull OM, Brown N, Chenthamarakshan V, Das P, Grosjean H, von Delft F, Deane CM. A Small Step Toward Generalizability: Training a Machine Learning Scoring Function for Structure-Based Virtual Screening. Journal of Chemical Information and Modeling. PMID 37166179 DOI: 10.1021/acs.jcim.3c00322 |
0.137 |
|
| 2023 |
Sharma B, Chenthamarakshan V, Dhurandhar A, Pereira S, Hendler JA, Dordick JS, Das P. Accurate clinical toxicity prediction using multi-task deep neural nets and contrastive molecular explanations. Scientific Reports. 13: 4908. PMID 36966203 DOI: 10.1038/s41598-023-31169-8 |
0.125 |
|
| 2024 |
Das P, Hazra A, Saha S, Roy S, Mukherjee M, Hazra S, Majumdar HK, BoseDasgupta S. Resolving the polycistronic aftermath: essential role of Topoisomerase IA in preventing R-loops in Leishmania. The Journal of Biological Chemistry. 107162. PMID 38484800 DOI: 10.1016/j.jbc.2024.107162 |
0.12 |
|
| 2022 |
Hingankar N, Deshpande S, Das P, Rizvi ZA, Wibmer CK, Mashilo P, Ansari MY, Burns A, Barman S, Zhao F, Mukherjee S, Torres JL, Chattopadhyay S, Mehdi F, Sutar J, et al. A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant. Plos Pathogens. 18: e1010465. PMID 35482816 DOI: 10.1371/journal.ppat.1010465 |
0.116 |
|
| 2024 |
Helal H, Firoz J, Bilbrey JA, Sprueill H, Herman KM, Krell MM, Murray T, Roldan ML, Kraus M, Li A, Das P, Xantheas SS, Choudhury S. Acceleration of Graph Neural Network-Based Prediction Models in Chemistry via Co-Design Optimization on Intelligence Processing Units. Journal of Chemical Information and Modeling. 64: 1568-1580. PMID 38382011 DOI: 10.1021/acs.jcim.3c01312 |
0.115 |
|
| 2020 |
Litsa EE, Das P, Kavraki LE. Prediction of drug metabolites using neural machine translation. Chemical Science. 11: 12777-12788. PMID 34094473 DOI: 10.1039/d0sc02639e |
0.091 |
|
| 2015 |
Hamilton I, Milner J, Chalabi Z, Das P, Jones B, Shrubsole C, Davies M, Wilkinson P. Health effects of home energy efficiency interventions in England: a modelling study. Bmj Open. 5: e007298. PMID 25916488 DOI: 10.1136/bmjopen-2014-007298 |
0.079 |
|
| 2020 |
Roy S, Ghatak D, Das P, BoseDasgupta S. ESX secretion system: The gatekeepers of mycobacterial survivability and pathogenesis. European Journal of Microbiology & Immunology. PMID 33174865 DOI: 10.1556/1886.2020.00028 |
0.075 |
|
| 2021 |
Das P, Saha S, BoseDasgupta S. The ultimate fate determinants of drug induced cell-death mechanisms in Trypanosomatids. International Journal For Parasitology. Drugs and Drug Resistance. 15: 81-91. PMID 33601284 DOI: 10.1016/j.ijpddr.2021.01.003 |
0.075 |
|
| 2023 |
Deshpande S, Ansari MY, Sutar J, Das P, Hingankar N, Mukherjee S, Jayal P, Singh S, Anantharaj A, Singh J, Chattopadhyay S, Raghavan S, Gosain M, Chauhan S, Shrivas S, et al. Ancestral SARS-CoV-2-Driven Antibody Repertoire Diversity in an Unvaccinated Individual Correlates with Expanded Neutralization Breadth. Microbiology Spectrum. e0433222. PMID 36946746 DOI: 10.1128/spectrum.04332-22 |
0.057 |
|
| 2014 |
Milner J, Shrubsole C, Das P, Jones B, Ridley I, Chalabi Z, Hamilton I, Armstrong B, Davies M, Wilkinson P. Home energy efficiency and radon related risk of lung cancer: modelling study. Bmj (Clinical Research Ed.). 348: f7493. PMID 24415631 |
0.055 |
|
| 2021 |
Litsa EE, Das P, Kavraki LE. Machine learning models in the prediction of drug metabolism: challenges and future perspectives. Expert Opinion On Drug Metabolism & Toxicology. 1-3. PMID 34706606 DOI: 10.1080/17425255.2021.1998454 |
0.049 |
|
| 2022 |
Biswas P, Swaroop S, Dutta N, Arya A, Ghosh S, Dhabal S, Das P, Majumder C, Pal M, Bhattacharjee A. IL-13 and the hydroperoxy fatty acid 13(S)HpODE play crucial role in inducing an apoptotic pathway in cancer cells involving MAO-A/ROS/p53/p21 signaling axis. Free Radical Biology & Medicine. PMID 36592660 DOI: 10.1016/j.freeradbiomed.2022.12.103 |
0.049 |
|
| 2021 |
Menon D, Gunasekar S, Dixit SK, Das P, Mandal S. Present and prospective research themes for tourism and hospitality education post-COVID19: A bibliometric analysis. Journal of Hospitality, Leisure, Sport & Tourism Education. 100360. PMID 34840528 DOI: 10.1016/j.jhlste.2021.100360 |
0.04 |
|
| 2015 |
Varma K, Gupta P, Das P, Singh P, Misra V. CD10 Positive Recurrent Undifferentiated Mammary Sarcoma in a Young Female: A Rare Case Report with Brief Review of Literature. Rare Tumors. 7: 5737. PMID 26266009 DOI: 10.4081/rt.2015.5737 |
0.039 |
|
| 2018 |
Das D, Das P, Moniruzzaman M, Poddar Sarkar M, Mukherjee J, Chakraborty SB. Consequences of oxidative damage and mitochondrial dysfunction on the fatty acid profile of muscle of Indian Major Carps considering metal toxicity. Chemosphere. 207: 385-396. PMID 29803888 DOI: 10.1016/j.chemosphere.2018.05.108 |
0.033 |
|
| 2017 |
Das S, Sah D, Nandi S, Das P. Opioid Withdrawal Presenting as Delirium and Role of Buprenorphine: A Case Series. Indian Journal of Psychological Medicine. 39: 665-667. PMID 29200566 DOI: 10.4103/0253-7176.217027 |
0.029 |
|
| 2022 |
Sherwal BL, Makkar N, Jain A, Dogra V, Prasad S, Jain R, Gupta A, Gulati S, Bhattar S, Sharma V, Saxena S, Das P, Bargotya M. Epidemiological trend and clinical profile of COVID-19 patients: Experience from a designated COVID-19 center in Delhi. Journal of Family Medicine and Primary Care. 11: 2106-2113. PMID 35800574 DOI: 10.4103/jfmpc.jfmpc_1981_21 |
0.029 |
|
| Hide low-probability matches. |