Gyan Bhanot - Publications

Affiliations: 
Graduate School - New Brunswick Rutgers University, New Brunswick, United States 
Area:
General Biophysics, Bioinformatics Biology, Oncology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Mehnert JM, Panda A, Zhong H, Hirshfield K, Damare S, Lane K, Sokol L, Stein MN, Rodriguez-Rodriquez L, Kaufman HL, Ali S, Ross JS, Pavlick DC, Bhanot G, White EP, et al. Immune activation and response to pembrolizumab in POLE-mutant endometrial cancer. The Journal of Clinical Investigation. PMID 27159395 DOI: 10.1172/JCI84940  0.72
2015 Yadav A, Radhakrishnan A, Bhanot G, Sinha H. Differential regulation of antagonistic pleiotropy in synthetic and natural populations suggests its role in adaptation. G3 (Bethesda, Md.). 5: 699-709. PMID 25711830 DOI: 10.1534/g3.115.017020  0.72
2015 Hormoz S, Bhanot G, Biehl M, Bilal E, Meyer P, Norel R, Rhrissorrakrai K, Dayarian A. Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets. Bioinformatics (Oxford, England). 31: 492-500. PMID 25152231 DOI: 10.1093/bioinformatics/btu569  0.4
2015 Dayarian A, Romero R, Wang Z, Biehl M, Bilal E, Hormoz S, Meyer P, Norel R, Rhrissorrakrai K, Bhanot G, Luo F, Tarca AL. Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. Bioinformatics (Oxford, England). 31: 462-70. PMID 25061067 DOI: 10.1093/bioinformatics/btu490  0.4
2015 Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R, Rhrissorrakrai K, Zeller MD, Hormoz S. Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge. Bioinformatics (Oxford, England). 31: 453-61. PMID 24994890 DOI: 10.1093/bioinformatics/btu407  0.4
2014 Davis CF, Ricketts CJ, Wang M, Yang L, Cherniack AD, Shen H, Buhay C, Kang H, Kim SC, Fahey CC, Hacker KE, Bhanot G, Gordenin DA, Chu A, Gunaratne PH, et al. The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. 26: 319-30. PMID 25155756 DOI: 10.1016/j.ccr.2014.07.014  0.72
2014 Wagh K, Bhatia A, Greenbaum BD, Bhanot G. Bird to human transmission biases and vaccine escape mutants in H5N1 infections. Plos One. 9: e100754. PMID 24988306 DOI: 10.1371/journal.pone.0100754  0.72
2014 Bhatia A, Yadav A, Zhu C, Gagneur J, Radhakrishnan A, Steinmetz LM, Bhanot G, Sinha H. Yeast growth plasticity is regulated by environment-specific multi-QTL interactions. G3 (Bethesda, Md.). 4: 769-77. PMID 24474169 DOI: 10.1534/g3.113.009142  0.72
2013 Tomar P, Bhatia A, Ramdas S, Diao L, Bhanot G, Sinha H. Sporulation genes associated with sporulation efficiency in natural isolates of yeast. Plos One. 8: e69765. PMID 23874994 DOI: 10.1371/journal.pone.0069765  0.72
2012 Wagh K, Bhatia A, Alexe G, Reddy A, Ravikumar V, Seiler M, Boemo M, Yao M, Cronk L, Naqvi A, Ganesan S, Levine AJ, Bhanot G. Lactase persistence and lipid pathway selection in the Maasai. Plos One. 7: e44751. PMID 23028602 DOI: 10.1371/journal.pone.0044751  0.72
2012 Norton KA, Namazi S, Barnard N, Fujibayashi M, Bhanot G, Ganesan S, Iyatomi H, Ogawa K, Shinbrot T. Automated reconstruction algorithm for identification of 3D architectures of cribriform ductal carcinoma in situ. Plos One. 7: e44011. PMID 22970156 DOI: 10.1371/journal.pone.0044011  0.72
2012 Toth ML, Melentijevic I, Shah L, Bhatia A, Lu K, Talwar A, Naji H, Ibanez-Ventoso C, Ghose P, Jevince A, Xue J, Herndon LA, Bhanot G, Rongo C, Hall DH, et al. Neurite sprouting and synapse deterioration in the aging Caenorhabditis elegans nervous system. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 8778-90. PMID 22745480 DOI: 10.1523/JNEUROSCI.1494-11.2012  0.72
2012 Bilal E, Vassallo K, Toppmeyer D, Barnard N, Rye IH, Almendro V, Russnes H, Børresen-Dale AL, Levine AJ, Bhanot G, Ganesan S. Amplified loci on chromosomes 8 and 17 predict early relapse in ER-positive breast cancers. Plos One. 7: e38575. PMID 22719901 DOI: 10.1371/journal.pone.0038575  0.4
2012 Powell AA, Talasaz AH, Zhang H, Coram MA, Reddy A, Deng G, Telli ML, Advani RH, Carlson RW, Mollick JA, Sheth S, Kurian AW, Ford JM, Stockdale FE, Quake SR, ... ... Bhanot G, et al. Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines. Plos One. 7: e33788. PMID 22586443 DOI: 10.1371/journal.pone.0033788  0.72
2012 Miles GD, Seiler M, Rodriguez L, Rajagopal G, Bhanot G. Identifying microRNA/mRNA dysregulations in ovarian cancer. Bmc Research Notes. 5: 164. PMID 22452920 DOI: 10.1186/1756-0500-5-164  0.72
2012 Vermeer PD, Bell M, Lee K, Vermeer DW, Wieking BG, Bilal E, Bhanot G, Drapkin RI, Ganesan S, Klingelhutz AJ, Hendriks WJ, Lee JH. ErbB2, EphrinB1, Src kinase and PTPN13 signaling complex regulates MAP kinase signaling in human cancers. Plos One. 7: e30447. PMID 22279592 DOI: 10.1371/journal.pone.0030447  0.4
2010 Bilal E, Alexe G, Yao M, Cong L, Kulkarni A, Ginjala V, Toppmeyer D, Ganesan S, Bhanot G. Identification of the YES1 Kinase as a Therapeutic Target in Basal-Like Breast Cancers. Genes & Cancer. 1: 1063-73. PMID 21779430 DOI: 10.1177/1947601910395583  0.4
2010 Brannon AR, Reddy A, Seiler M, Arreola A, Moore DT, Pruthi RS, Wallen EM, Nielsen ME, Liu H, Nathanson KL, Ljungberg B, Zhao H, Brooks JD, Ganesan S, Bhanot G, et al. Molecular Stratification of Clear Cell Renal Cell Carcinoma by Consensus Clustering Reveals Distinct Subtypes and Survival Patterns. Genes & Cancer. 1: 152-163. PMID 20871783 DOI: 10.1177/1947601909359929  0.72
2010 Liu H, Brannon AR, Reddy AR, Alexe G, Seiler MW, Arreola A, Oza JH, Yao M, Juan D, Liou LS, Ganesan S, Levine AJ, Rathmell WK, Bhanot GV. Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma. Bmc Systems Biology. 4: 51. PMID 20420713 DOI: 10.1186/1752-0509-4-51  0.72
2010 Norton KA, Wininger M, Bhanot G, Ganesan S, Barnard N, Shinbrot T. A 2D mechanistic model of breast ductal carcinoma in situ (DCIS) morphology and progression. Journal of Theoretical Biology. 263: 393-406. PMID 20006623 DOI: 10.1016/j.jtbi.2009.11.024  0.72
2010 Basavanhally AN, Ganesan S, Agner S, Monaco JP, Feldman MD, Tomaszewski JE, Bhanot G, Madabhushi A. Computerized image-based detection and grading of lymphocytic infiltration in HER2+ breast cancer histopathology. Ieee Transactions On Bio-Medical Engineering. 57: 642-53. PMID 19884074 DOI: 10.1109/TBME.2009.2035305  0.72
2009 Mathew R, Karp CM, Beaudoin B, Vuong N, Chen G, Chen HY, Bray K, Reddy A, Bhanot G, Gelinas C, Dipaola RS, Karantza-Wadsworth V, White E. Autophagy suppresses tumorigenesis through elimination of p62. Cell. 137: 1062-75. PMID 19524509 DOI: 10.1016/j.cell.2009.03.048  0.72
2009 Lexe G, Monaco J, Doyle S, Basavanhally A, Reddy A, Seiler M, Ganesan S, Bhanot G, Madabhushi A. Towards improved cancer diagnosis and prognosis using analysis of gene expression data and computer aided imaging. Experimental Biology and Medicine (Maywood, N.J.). 234: 860-79. PMID 19491367 DOI: 10.3181/0902-MR-89  0.72
2008 Bilal E, Rabadan R, Alexe G, Fuku N, Ueno H, Nishigaki Y, Fujita Y, Ito M, Arai Y, Hirose N, Ruckenstein A, Bhanot G, Tanaka M. Mitochondrial DNA haplogroup D4a is a marker for extreme longevity in Japan. Plos One. 3: e2421. PMID 18545700 DOI: 10.1371/journal.pone.0002421  0.72
2008 Greenbaum BD, Levine AJ, Bhanot G, Rabadan R. Patterns of evolution and host gene mimicry in influenza and other RNA viruses. Plos Pathogens. 4: e1000079. PMID 18535658 DOI: 10.1371/journal.ppat.1000079  0.72
2007 Alexe G, Dalgin GS, Scanfeld D, Tamayo P, Mesirov JP, Ganesan S, Delisi C, Bhanot G. Breast cancer stratification from analysis of micro-array data of micro-dissected specimens. Genome Informatics. International Conference On Genome Informatics. 18: 130-40. PMID 18546481  0.72
2007 Dalgin GS, Alexe G, Scanfeld D, Tamayo P, Mesirov JP, Ganesan S, DeLisi C, Bhanot G. Portraits of breast cancer progression. Bmc Bioinformatics. 8: 291. PMID 17683614 DOI: 10.1186/1471-2105-8-291  0.72
2007 Alexe G, Fuku N, Bilal E, Ueno H, Nishigaki Y, Fujita Y, Ito M, Arai Y, Hirose N, Bhanot G, Tanaka M. Enrichment of longevity phenotype in mtDNA haplogroups D4b2b, D4a, and D5 in the Japanese population. Human Genetics. 121: 347-56. PMID 17308896 DOI: 10.1007/s00439-007-0330-6  0.4
2006 Satya RV, Mukherjee A, Alexe G, Parida L, Bhanot G. Constructing near-perfect phylogenies with multiple homoplasy events. Bioinformatics (Oxford, England). 22: e514-22. PMID 16873515 DOI: 10.1093/bioinformatics/btl262  0.72
2005 Alexe G, Bhanot G, Venkataraghavan B, Ramaswamy R, Lepre J, Levine AJ, Stolovitzky G. A robust meta-classification strategy for cancer diagnosis from gene expression data. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 322-5. PMID 16447989 DOI: 10.1109/CSB.2005.7  0.72
2005 Bhanot G, Alexe G, Levine AJ, Stolovitzky G. Robust diagnosis of non-Hodgkin lymphoma phenotypes validated on gene expression data from different laboratories. Genome Informatics. International Conference On Genome Informatics. 16: 233-44. PMID 16362926  0.72
2003 Louzoun Y, Weigert M, Bhanot G. Dynamical analysis of a degenerate primary and secondary humoral immune response Bulletin of Mathematical Biology. 65: 535-545. PMID 12749538 DOI: 10.1016/S0092-8240(03)00023-5  0.72
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