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Kevin Ryan - Publications

Affiliations: 
Chemistry City College of New York, New York, NY, United States 
Area:
RNA, Olfaction,
Website:
http://www.sci.ccny.cuny.edu/~kr107/index2/index.html
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lama L, Ryan K. Starting and Stopping RNA Polymerase III Transcription on Single-Stranded DNA Oligonucleotides. Rna (New York, N.Y.). PMID 35853667 DOI: 10.1261/rna.078981.121  0.807
2020 Liu MT, Na M, Li Y, Biscoe MR, Ryan K. Conformational Sensing by a Mammalian Olfactory Receptor. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32691933 DOI: 10.1002/Chem.202001390  0.725
2020 Liu MT, Na M, Li Y, Biscoe MR, Ryan K. Cover Feature: Conformational Sensing by a Mammalian Olfactory Receptor (Chem. Eur. J. 50/2020) Chemistry – a European Journal. 26: 11346-11346. DOI: 10.1002/Chem.202003590  0.72
2019 Lama L, Cobo J, Buenaventura D, Ryan K. Small RNA-seq: The RNA 5'-end adapter ligation problem and how to circumvent it. Journal of Biological Methods. 6. PMID 31080843 DOI: 10.14440/jbm.2019.269  0.756
2018 Na M, Liu MT, Nguyen MQ, Ryan K. Single-Neuron Comparison of the Olfactory Receptor Response to Deuterated and Nondeuterated Odorants. Acs Chemical Neuroscience. PMID 30343564 DOI: 10.1021/Acschemneuro.8B00416  0.613
2018 Liu MT, Ho J, Liu JK, Purakait R, Morzan UN, Ahmed L, Batista VS, Matsunami H, Ryan K. Carbon chain shape selectivity by the mouse olfactory receptor OR-I7. Organic & Biomolecular Chemistry. PMID 29569669 DOI: 10.1039/C8Ob00205C  0.385
2017 Na M, Valente ST, Ryan K. Optimizing In Vitro Pre-mRNA 3' Cleavage Efficiency: Reconstitution from Anion-Exchange Separated HeLa Cleavage Factors and from Adherent HeLa Cell Nuclear Extract. Methods in Molecular Biology (Clifton, N.J.). 1507: 179-198. PMID 27832541 DOI: 10.1007/978-1-4939-6518-2_14  0.644
2016 Patel J, Lama L, Hoffmann NA, Cobo J, Müller CW, Ryan K. RNA polymerase III initiation on coligo DNA templates containing loops of variable sequence, size and nucleotide chemistry. Gene. PMID 27593562 DOI: 10.1016/J.Gene.2016.09.001  0.744
2016 Khleborodova A, Pan X, Nagre NN, Ryan K. An investigation into the role of ATP in the mammalian pre-mRNA 3' cleavage reaction. Biochimie. PMID 27060432 DOI: 10.1016/J.Biochi.2016.04.004  0.75
2015 Lama L, Ryan K. Adenylylation of small RNA sequencing adapters using the TS2126 RNA ligase I. Rna (New York, N.Y.). PMID 26567315 DOI: 10.1261/Rna.054999.115  0.792
2014 Lama L, Seidl CI, Ryan K. New insights into the promoterless transcription of DNA coligo templates by RNA polymerase III. Transcription. 5: e27913. PMID 25764216 DOI: 10.4161/trns.27913  0.813
2014 Li Y, Peterlin Z, Ho J, Yarnitzky T, Liu MT, Fichman M, Niv MY, Matsunami H, Firestein S, Ryan K. Aldehyde recognition and discrimination by mammalian odorant receptors via functional group-specific hydration chemistry. Acs Chemical Biology. 9: 2563-71. PMID 25181321 DOI: 10.1021/Cb400290U  0.672
2014 Jablonski J, Clementz M, Ryan K, Valente ST. Analysis of RNA processing reactions using cell free systems: 3' end cleavage of pre-mRNA substrates in vitro. Journal of Visualized Experiments : Jove. PMID 24835792 DOI: 10.3791/51309  0.5
2014 Lama L, Seidl CI, Ryan K. New insights into the promoterless transcription of DNA coligo templates by RNA polymerase III. Transcription. 5. PMID 24531370  0.348
2014 Liu MT, Nagre NN, Ryan K. Structurally diverse low molecular weight activators of the mammalian pre-mRNA 3' cleavage reaction. Bioorganic & Medicinal Chemistry. 22: 834-41. PMID 24373842 DOI: 10.1016/J.Bmc.2013.12.006  0.457
2013 Seidl CI, Lama L, Ryan K. Circularized synthetic oligodeoxynucleotides serve as promoterless RNA polymerase III templates for small RNA generation in human cells. Nucleic Acids Research. 41: 2552-64. PMID 23275570 DOI: 10.1093/Nar/Gks1334  0.803
2011 Seidl CI, Ryan K. Circular single-stranded synthetic DNA delivery vectors for microRNA. Plos One. 6: e16925. PMID 21359172 DOI: 10.1371/Journal.Pone.0016925  0.444
2009 Himmel DM, Maegley KA, Pauly TA, Bauman JD, Das K, Dharia C, Clark AD, Ryan K, Hickey MJ, Love RA, Hughes SH, Bergqvist S, Arnold E. Structure of HIV-1 reverse transcriptase with the inhibitor beta-Thujaplicinol bound at the RNase H active site. Structure (London, England : 1993). 17: 1625-35. PMID 20004166 DOI: 10.1016/J.Str.2009.09.016  0.304
2009 Ryan K, Khleborodova A, Pan J, Ryan XP. Small molecule activators of pre-mRNA 3' cleavage. Rna (New York, N.Y.). 15: 483-92. PMID 19155323 DOI: 10.1261/Rna.1262509  0.751
2008 Peterlin Z, Li Y, Sun G, Shah R, Firestein S, Ryan K. The importance of odorant conformation to the binding and activation of a representative olfactory receptor. Chemistry & Biology. 15: 1317-27. PMID 19101476 DOI: 10.1016/J.Chembiol.2008.10.014  0.644
2008 Ryan K, Bauer DL. Finishing touches: post-translational modification of protein factors involved in mammalian pre-mRNA 3' end formation. The International Journal of Biochemistry & Cell Biology. 40: 2384-96. PMID 18468939 DOI: 10.1016/J.Biocel.2008.03.016  0.626
2007 Ryan K. Pre-mRNA 3' cleavage is reversibly inhibited in vitro by cleavage factor dephosphorylation. Rna Biology. 4: 26-33. PMID 17585202 DOI: 10.4161/Rna.4.1.4365  0.341
2004 Barnard DC, Ryan K, Manley JL, Richter JD. Symplekin and xGLD-2 are required for CPEB-mediated cytoplasmic polyadenylation. Cell. 119: 641-51. PMID 15550246 DOI: 10.1016/J.Cell.2004.10.029  0.576
2004 Ryan K, Calvo O, Manley JL. Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease. Rna (New York, N.Y.). 10: 565-73. PMID 15037765 DOI: 10.1261/Rna.5214404  0.552
2002 Ryan K, Murthy KG, Kaneko S, Manley JL. Requirements of the RNA polymerase II C-terminal domain for reconstituting pre-mRNA 3' cleavage. Molecular and Cellular Biology. 22: 1684-92. PMID 11865048 DOI: 10.1128/Mcb.22.6.1684-1692.2002  0.698
2000 Mendez R, Murthy KG, Ryan K, Manley JL, Richter JD. Phosphorylation of CPEB by Eg2 mediates the recruitment of CPSF into an active cytoplasmic polyadenylation complex. Molecular Cell. 6: 1253-9. PMID 11106762 DOI: 10.1016/S1097-2765(00)00121-0  0.567
2000 Ryan K, Gershell LJ, Clark Still W. A Synthetic Receptor Motif Designed for Extended Peptide Conformations Tetrahedron. 56: 3309-3318. DOI: 10.1016/S0040-4020(00)00252-0  0.306
1999 Hwang S, Tamilarasu N, Ryan K, Huq I, Richter S, Still WC, Rana TM. Inhibition of gene expression in human cells through small molecule-RNA interactions. Proceedings of the National Academy of Sciences of the United States of America. 96: 12997-3002. PMID 10557261 DOI: 10.1073/Pnas.96.23.12997  0.658
1999 Ryan K, Still WC. Construction of sequence-selective peptide receptors from conformationally restricted eta- and theta- amino acids. Bioorganic & Medicinal Chemistry Letters. 9: 2673-8. PMID 10509914 DOI: 10.1016/S0960-894X(99)00463-1  0.54
1998 Ryan K, Kool ET. Triplex-directed self-assembly of an artificial sliding clamp on duplex DNA. Chemistry & Biology. 5: 59-67. PMID 9495829 DOI: 10.1016/S1074-5521(98)90140-5  0.537
1996 Liu D, Daubendiek SL, Zillman MA, Ryan K, Kool ET. Rolling Circle DNA Synthesis: Small Circular Oligonucleotides as Efficient Templates for DNA Polymerases. Journal of the American Chemical Society. 118: 1587-1594. PMID 20830216 DOI: 10.1021/Ja952786K  0.533
1995 Daubendiek SL, Ryan K, Kool ET. Rolling-Circle RNA Synthesis: Circular Oligonucleotides as Efficient Substrates for T7 RNA Polymerase. Journal of the American Chemical Society. 117: 7818-7819. PMID 27524830 DOI: 10.1021/Ja00134A032  0.64
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