| Year |
Citation |
Score |
| 2023 |
Xu C, Birchler JA. Editorial: Plant artificial chromosomes: progress and perspectives. Frontiers in Plant Science. 14: 1290386. PMID 37822343 DOI: 10.3389/fpls.2023.1290386 |
0.408 |
|
| 2023 |
Albert PS, Birchler JA. Nitrous Oxide-Induced Metaphase Arrest: A Technique for Somatic Chromosome Analysis. Methods in Molecular Biology (Clifton, N.J.). 2672: 129-139. PMID 37335472 DOI: 10.1007/978-1-0716-3226-0_6 |
0.428 |
|
| 2023 |
Phillips AR, Seetharam AS, Albert PS, AuBuchon-Elder T, Birchler JA, Buckler ES, Gillespie LJ, Hufford MB, Llaca V, Romay MC, Soreng RJ, Kellogg EA, Ross-Ibarra J. A happy accident: a novel turfgrass reference genome. G3 (Bethesda, Md.). PMID 37002915 DOI: 10.1093/g3journal/jkad073 |
0.511 |
|
| 2022 |
Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Genomic imbalance modulates transposable element expression in maize. Plant Communications. 100467. PMID 36307986 DOI: 10.1016/j.xplc.2022.100467 |
0.339 |
|
| 2022 |
Zhou J, Liu Y, Guo X, Birchler JA, Han F, Su H. Centromeres: from chromosome biology to biotechnology applications and synthetic genomes in plants. Plant Biotechnology Journal. PMID 35722725 DOI: 10.1111/pbi.13875 |
0.424 |
|
| 2022 |
Chen J, Birchler JA, Houben A. The non-Mendelian behavior of plant B chromosomes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 35412169 DOI: 10.1007/s10577-022-09687-4 |
0.45 |
|
| 2022 |
Birchler JA, Yang H. The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation. The Plant Cell. PMID 35253876 DOI: 10.1093/plcell/koac076 |
0.327 |
|
| 2022 |
Shi X, Yang H, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Effect of aneuploidy of a nonessential chromosome on gene expression in maize. The Plant Journal : For Cell and Molecular Biology. PMID 34997647 DOI: 10.1111/tpj.15665 |
0.422 |
|
| 2021 |
Birchler JA, Veitia RA. One Hundred Years of Gene Balance: How Stoichiometric Issues Affect Gene Expression, Genome Evolution, and Quantitative Traits. Cytogenetic and Genome Research. 1-22. PMID 34814143 DOI: 10.1159/000519592 |
0.428 |
|
| 2021 |
Birchler JA, Yang H. The supernumerary B chromosome of maize: drive and genomic conflict. Open Biology. 11: 210197. PMID 34727722 DOI: 10.1098/rsob.210197 |
0.481 |
|
| 2021 |
Douglas RN, Yang H, Zhang B, Chen C, Han F, Cheng J, Birchler JA. De novo centromere formation on chromosome fragments with an inactive centromere in maize (Zea mays). Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 34406545 DOI: 10.1007/s10577-021-09670-5 |
0.455 |
|
| 2021 |
Blavet N, Yang H, Su H, Solanský P, Douglas RN, Karafiátová M, Šimková L, Zhang J, Liu Y, Hou J, Shi X, Chen C, El-Walid M, McCaw ME, Albert PS, ... ... Birchler JA, et al. Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34088847 DOI: 10.1073/pnas.2104254118 |
0.491 |
|
| 2021 |
Shi X, Yang H, Chen C, Hou J, Hanson KM, Albert PS, Ji T, Cheng J, Birchler JA. Genomic imbalance determines positive and negative modulation of gene expression in diploid maize. The Plant Cell. PMID 33677584 DOI: 10.1093/plcell/koab030 |
0.43 |
|
| 2021 |
Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize. The Plant Cell. PMID 33656551 DOI: 10.1093/plcell/koab029 |
0.416 |
|
| 2021 |
Liu Q, Liu Y, Shi Q, Su H, Wang C, Birchler JA, Han F. Emerging roles of centromeric RNAs in centromere formation and function. Genes & Genomics. PMID 33523401 DOI: 10.1007/s13258-021-01041-y |
0.349 |
|
| 2020 |
Braz GT, Yu F, Zhao H, Deng Z, Birchler JA, Jiang J. Preferential meiotic chromosome pairing among homologous chromosomes with cryptic sequence variation in tetraploid maize. The New Phytologist. PMID 33222183 DOI: 10.1111/nph.17098 |
0.463 |
|
| 2020 |
Liu Y, Wang C, Su H, Birchler JA, Han F. Phosphorylation of histone H3 by Haspin regulates chromosome alignment and segregation in maize mitosis. Journal of Experimental Botany. PMID 33130883 DOI: 10.1093/jxb/eraa506 |
0.409 |
|
| 2020 |
Liu Y, Su H, Zhang J, Shi L, Liu Y, Zhang B, Bai H, Liang S, Gao Z, Birchler JA, Han F. Rapid Birth or Death of Centromeres on Fragmented Chromosomes in Maize. The Plant Cell. PMID 32817254 DOI: 10.1105/Tpc.20.00389 |
0.565 |
|
| 2020 |
Braz GT, do Vale Martins L, Zhang T, Albert PS, Birchler JA, Jiang J. A universal chromosome identification system for maize and wild Zea species. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 32219602 DOI: 10.1007/S10577-020-09630-5 |
0.5 |
|
| 2020 |
Johnson AF, Hou J, Yang H, Shi X, Chen C, Islam MS, Ji T, Cheng J, Birchler JA. Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32178980 DOI: 10.1016/J.Jgg.2020.02.002 |
0.5 |
|
| 2020 |
Shi X, Chen C, Yang H, Hou J, Ji T, Cheng J, Veitia RA, Birchler JA. The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 161-171. PMID 32088896 DOI: 10.1007/978-1-0716-0179-2_12 |
0.497 |
|
| 2020 |
Birchler JA, Swyers NC. Engineered minichromosomes in plants. Experimental Cell Research. 111852. PMID 31972219 DOI: 10.1016/J.Yexcr.2020.111852 |
0.569 |
|
| 2020 |
McCaw M, Graham N, Cody J, Swyers N, Zhao C, Birchler J. Fluorescence In Situ Hybridization to Maize (Zea mays) Chromosomes. Current Protocols in Plant Biology. 1: 530-545. PMID 31725962 DOI: 10.1002/CPPB.20033 |
0.404 |
|
| 2020 |
McCaw M, Swyers N, Graham N, Cody J, Zhao C, Birchler J. Preparation of Chromosomes from Zea mays. Current Protocols in Plant Biology. 1: 501-509. PMID 31725957 DOI: 10.1002/CPPB.20032 |
0.403 |
|
| 2019 |
Feng C, Yuan J, Bai H, Liu Y, Su H, Liu Y, Shi L, Gao Z, Birchler JA, Han F. The deposition of CENH3 in maize is stringently regulated. The Plant Journal : For Cell and Molecular Biology. PMID 31713923 DOI: 10.1111/Tpj.14606 |
0.363 |
|
| 2019 |
do Vale Martins L, Yu F, Zhao H, Dennison T, Lauter N, Wang H, Deng Z, Thompson A, Semrau K, Rouillard JM, Birchler JA, Jiang J. Meiotic crossovers characterized by haplotype-specific chromosome painting in maize. Nature Communications. 10: 4604. PMID 31601818 DOI: 10.1038/S41467-019-12646-Z |
0.528 |
|
| 2019 |
Washburn JD, McElfresh MJ, Birchler JA. Progressive heterosis in genetically defined tetraploid maize. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 31444136 DOI: 10.1016/J.Jgg.2019.02.010 |
0.378 |
|
| 2019 |
Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, et al. Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics. PMID 31320409 DOI: 10.1534/Genetics.119.302378 |
0.472 |
|
| 2019 |
Birchler JA. Genomic Balance Plays Out in Evolution. The Plant Cell. PMID 31048333 DOI: 10.1105/Tpc.19.00329 |
0.332 |
|
| 2019 |
Birchler JA, Veitia RA. Genomic Balance and Speciation. Epigenetics Insights. 12: 2516865719840291. PMID 30968064 DOI: 10.1177/2516865719840291 |
0.302 |
|
| 2019 |
Albert PS, Zhang T, Semrau K, Rouillard JM, Kao YH, Wang CR, Danilova TV, Jiang J, Birchler JA. Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships. Proceedings of the National Academy of Sciences of the United States of America. PMID 30655344 DOI: 10.1073/Pnas.1813957116 |
0.551 |
|
| 2018 |
Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA. Global impacts of chromosomal imbalance on gene expression in and other taxa. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429332 DOI: 10.1073/Pnas.1807796115 |
0.457 |
|
| 2018 |
Su H, Liu Y, Liu Y, Birchler JA, Han F. The Behavior of the Maize B Chromosome and Centromere. Genes. 9. PMID 30275397 DOI: 10.3390/Genes9100476 |
0.538 |
|
| 2018 |
Han F, Lamb JC, McCaw ME, Gao Z, Zhang B, Swyers NC, Birchler JA. Meiotic Studies on Combinations of Chromosomes With Different Sized Centromeres in Maize. Frontiers in Plant Science. 9: 785. PMID 29951076 DOI: 10.3389/Fpls.2018.00785 |
0.543 |
|
| 2018 |
Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. Plos Genetics. 14: e1007162. PMID 29746459 DOI: 10.1371/Journal.Pgen.1007162 |
0.341 |
|
| 2018 |
Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, et al. A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize. Cell. PMID 29628142 DOI: 10.1016/J.Cell.2018.03.009 |
0.461 |
|
| 2018 |
Feng C, Su H, Han B, Wang R, Liu Y, Guo X, Liu C, Zhang J, Yuan J, Birchler JA, Han F. High efficiency genome editing using a dmc1 promoter-controlled CRISPR/Cas9 system in maize. Plant Biotechnology Journal. PMID 29569825 DOI: 10.1111/Pbi.12920 |
0.363 |
|
| 2018 |
Birchler JA, Han F. Barbara McClintock's Unsolved Chromosomal Mysteries: Parallels to common rearrangements and karyotype evolution. The Plant Cell. PMID 29545470 DOI: 10.1105/Tpc.17.00989 |
0.554 |
|
| 2018 |
Nani TF, Schnable JC, Washburn JD, Albert P, Pereira WA, Sobrinho FS, Birchler JA, Techio VH. Location of low copy genes in chromosomes of Brachiaria spp. Molecular Biology Reports. PMID 29330722 DOI: 10.1007/S11033-018-4144-5 |
0.492 |
|
| 2017 |
Findley SD, Birchler JA, Stacey G. Metaphase Chromosome Preparation from Soybean (Glycine max) Root Tips. Current Protocols in Plant Biology. 2: 78-88. PMID 31725978 DOI: 10.1002/cppb.20046 |
0.398 |
|
| 2017 |
Findley SD, Birchler JA, Stacey G. Fluorescence In Situ Hybridization for Glycine max Metaphase Chromosomes. Current Protocols in Plant Biology. 2: 89-107. PMID 31725974 DOI: 10.1002/cppb.20045 |
0.323 |
|
| 2017 |
Liu Y, Su H, Liu Y, Zhang J, Dong Q, Birchler JA, Han F. Cohesion and centromere activity are required for histone H3 phosphorylation in maize. The Plant Journal : For Cell and Molecular Biology. PMID 29032586 DOI: 10.1111/Tpj.13748 |
0.451 |
|
| 2017 |
Birchler JA. Editing the Phenotype: A Revolution for Quantitative Genetics. Cell. 171: 269-270. PMID 28985558 DOI: 10.1016/J.Cell.2017.09.024 |
0.306 |
|
| 2017 |
Zhao H, Zeng Z, Koo DH, Gill BS, Birchler JA, Jiang J. Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 28831743 DOI: 10.1007/S10577-017-9564-X |
0.517 |
|
| 2017 |
Su H, Liu Y, Dong Q, Feng C, Zhang J, Liu Y, Birchler JA, Han F. Dynamic location changes of Bub1-phosphorylated-H2AThr133 with CENH3 nucleosome in maize centromeric regions. The New Phytologist. PMID 28079247 DOI: 10.1111/Nph.14415 |
0.484 |
|
| 2016 |
Birchler JA. Plant science: Hybrid vigour characterized. Nature. PMID 27602522 DOI: 10.1038/Nature19433 |
0.44 |
|
| 2016 |
Graham N, Swyers N, Cody J, McCaw M, Zhao C, Birchler JA. Production of Engineered Minichromosome Vectors via the Introduction of Telomere Sequences. Methods in Molecular Biology (Clifton, N.J.). 1469: 1-13. PMID 27557682 DOI: 10.1007/978-1-4939-4931-1_1 |
0.451 |
|
| 2016 |
Su H, Liu Y, Liu YX, Lv Z, Li H, Xie S, Gao Z, Pang J, Wang XJ, Lai J, Birchler JA, Han F. Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin. The Plant Journal : For Cell and Molecular Biology. PMID 27531446 DOI: 10.1111/Tpj.13305 |
0.408 |
|
| 2016 |
Birchler JA. Marcus Rhoades on Preferential Segregation in Maize. Genetics. 203: 1489-90. PMID 27516610 DOI: 10.1534/Genetics.116.193011 |
0.319 |
|
| 2016 |
McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA. Fast-Flowering Mini-Maize: Seed to Seed in 60 Days. Genetics. PMID 27440866 DOI: 10.1534/Genetics.116.191726 |
0.599 |
|
| 2016 |
Birchler JA. Parallel Universes for Models of X Chromosome Dosage Compensation in Drosophila: A Review. Cytogenetic and Genome Research. PMID 27166165 DOI: 10.1159/000445924 |
0.47 |
|
| 2016 |
Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG. High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events. Frontiers in Plant Science. 7: 308. PMID 27047500 DOI: 10.3389/Fpls.2016.00308 |
0.41 |
|
| 2016 |
Birchler JA, Johnson AF, Veitia RA. Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits. Plant Science : An International Journal of Experimental Plant Biology. 245: 128-34. PMID 26940497 DOI: 10.1016/J.Plantsci.2016.02.002 |
0.401 |
|
| 2016 |
Feng C, Yuan J, Wang R, Liu Y, Birchler JA, Han F. Efficient Targeted Genome Modification in Maize Using CRISPR/Cas9 System. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 43: 37-43. PMID 26842992 DOI: 10.1016/J.Jgg.2015.10.002 |
0.36 |
|
| 2016 |
Yu W, Birchler JA. A green fluorescent protein-engineered haploid inducer line facilitates haploid mutant screens and doubled haploid breeding in maize Molecular Breeding. 36: 1-12. DOI: 10.1007/S11032-015-0428-9 |
0.37 |
|
| 2015 |
Birchler JA. Heterosis: The genetic basis of hybrid vigour. Nature Plants. 1: 15020. PMID 27246887 DOI: 10.1038/Nplants.2015.20 |
0.323 |
|
| 2015 |
Birchler JA, Graham ND, Swyers NC, Cody JP, McCaw ME. Plant minichromosomes. Current Opinion in Biotechnology. 37: 135-142. PMID 26723011 DOI: 10.1016/j.copbio.2015.11.007 |
0.39 |
|
| 2015 |
Liu Y, Su H, Zhang J, Liu Y, Han F, Birchler JA. Dynamic epigenetic states of maize centromeres. Frontiers in Plant Science. 6: 904. PMID 26579154 DOI: 10.3389/Fpls.2015.00904 |
0.523 |
|
| 2015 |
Ellis NA, Douglas RN, Jackson CE, Birchler JA, Dawe RK. Generation of a Maize B Centromere Minimal Map Containing the Central Core Domain. G3 (Bethesda, Md.). PMID 26511496 DOI: 10.1534/G3.115.022889 |
0.448 |
|
| 2015 |
Yu W, Yau YY, Birchler JA. Plant artificial chromosome technology and its potential application in genetic engineering. Plant Biotechnology Journal. PMID 26369910 DOI: 10.1111/Pbi.12466 |
0.43 |
|
| 2015 |
Lough AN, Faries KM, Koo DH, Hussain A, Roark LM, Langewisch TL, Backes T, Kremling KA, Jiang J, Birchler JA, Newton KJ. Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize. G3 (Bethesda, Md.). PMID 26333837 DOI: 10.1534/G3.115.020677 |
0.455 |
|
| 2015 |
Graham ND, Cody JP, Swyers NC, McCaw ME, Zhao C, Birchler JA. Engineered Minichromosomes in Plants: Structure, Function, and Applications. International Review of Cell and Molecular Biology. 318: 63-119. PMID 26315884 DOI: 10.1016/Bs.Ircmb.2015.05.002 |
0.497 |
|
| 2015 |
Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, et al. From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. Plos One. 10: e0125000. PMID 25902288 DOI: 10.1371/Journal.Pone.0125000 |
0.33 |
|
| 2015 |
Liu Y, Su H, Pang J, Gao Z, Wang XJ, Birchler JA, Han F. Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize. Proceedings of the National Academy of Sciences of the United States of America. 112: E1263-71. PMID 25733907 DOI: 10.1073/Pnas.1418248112 |
0.548 |
|
| 2015 |
Feng C, Liu Y, Su H, Wang H, Birchler J, Han F. Recent advances in plant centromere biology. Science China. Life Sciences. 58: 240-5. PMID 25682396 DOI: 10.1007/S11427-015-4818-3 |
0.499 |
|
| 2015 |
Birchler JA. Promises and pitfalls of synthetic chromosomes in plants. Trends in Biotechnology. 33: 189-94. PMID 25624060 DOI: 10.1016/J.Tibtech.2014.12.010 |
0.517 |
|
| 2015 |
Birchler JA. Engineered minichromosomes in plants. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 23: 77-85. PMID 25596825 DOI: 10.1007/S10577-014-9454-4 |
0.555 |
|
| 2015 |
Veitia RA, Veyrunes F, Bottani S, Birchler JA. X chromosome inactivation and active X upregulation in therian mammals: facts, questions, and hypotheses. Journal of Molecular Cell Biology. 7: 2-11. PMID 25564545 DOI: 10.1093/Jmcb/Mjv001 |
0.395 |
|
| 2015 |
Cody JP, Swyers NC, McCaw ME, Graham ND, Zhao C, Birchler JA. Minichromosomes: Vectors for crop improvement Agronomy. 5: 309-321. DOI: 10.3390/Agronomy5030309 |
0.421 |
|
| 2015 |
Graham N, Swyers N, Gaeta R, Zhao C, Cody J, Birchler J. Telomere-mediated Chromosomal Truncation via Agrobacterium tumefaciens or Particle Bombardment to Produce Engineered Minichromosomes in Plants Bio-Protocol. 5. DOI: 10.21769/BIOPROTOC.1595 |
0.33 |
|
| 2014 |
Birchler JA. Facts and artifacts in studies of gene expression in aneuploids and sex chromosomes. Chromosoma. 123: 459-69. PMID 25069760 DOI: 10.1007/S00412-014-0478-5 |
0.528 |
|
| 2014 |
Birchler JA. Interploidy hybridization barrier of endosperm as a dosage interaction. Frontiers in Plant Science. 5: 281. PMID 25018757 DOI: 10.3389/Fpls.2014.00281 |
0.375 |
|
| 2014 |
Conant GC, Birchler JA, Pires JC. Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Current Opinion in Plant Biology. 19: 91-8. PMID 24907529 DOI: 10.1016/J.Pbi.2014.05.008 |
0.45 |
|
| 2014 |
Birchler JA. Engineered minichromosomes in plants. Current Opinion in Plant Biology. 19: 76-80. PMID 24906050 DOI: 10.1016/J.Pbi.2014.05.009 |
0.556 |
|
| 2014 |
Zhang J, Zhang B, Su H, Birchler JA, Han F. Molecular mechanisms of homologous chromosome pairing and segregation in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 41: 117-23. PMID 24656232 DOI: 10.1016/J.Jgg.2013.12.003 |
0.543 |
|
| 2014 |
Birchler JA, Veitia RA. The Gene Balance Hypothesis: dosage effects in plants. Methods in Molecular Biology (Clifton, N.J.). 1112: 25-32. PMID 24478005 DOI: 10.1007/978-1-62703-773-0_2 |
0.409 |
|
| 2014 |
Washburn JD, Birchler JA. Polyploids as a "model system" for the study of heterosis. Plant Reproduction. 27: 1-5. PMID 24202960 DOI: 10.1007/S00497-013-0237-4 |
0.31 |
|
| 2013 |
Birchler JA, Han F. Meiotic behavior of small chromosomes in maize. Frontiers in Plant Science. 4: 505. PMID 24381575 DOI: 10.3389/Fpls.2013.00505 |
0.513 |
|
| 2013 |
Sun L, Johnson AF, Li J, Lambdin AS, Cheng J, Birchler JA. Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 16514-9. PMID 24062456 DOI: 10.1073/Pnas.1316041110 |
0.424 |
|
| 2013 |
Xie W, Donohue RC, Birchler JA. Quantitatively increased somatic transposition of transposable elements in Drosophila strains compromised for RNAi. Plos One. 8: e72163. PMID 23940807 DOI: 10.1371/Journal.Pone.0072163 |
0.358 |
|
| 2013 |
Birchler JA, Han F. Centromere epigenetics in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 40: 201-4. PMID 23706294 DOI: 10.1016/J.Jgg.2013.03.008 |
0.325 |
|
| 2013 |
Veitia RA, Bottani S, Birchler JA. Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation. Trends in Genetics : Tig. 29: 385-93. PMID 23684842 DOI: 10.1016/J.Tig.2013.04.004 |
0.302 |
|
| 2013 |
Sun L, Johnson AF, Donohue RC, Li J, Cheng J, Birchler JA. Dosage compensation and inverse effects in triple X metafemales of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 7383-8. PMID 23589863 DOI: 10.1073/Pnas.1305638110 |
0.428 |
|
| 2013 |
Gao Z, Han F, Danilova TV, Lamb JC, Albert PS, Birchler JA. Labeling meiotic chromosomes in maize with fluorescence in situ hybridization. Methods in Molecular Biology (Clifton, N.J.). 990: 35-43. PMID 23559200 DOI: 10.1007/978-1-62703-333-6_4 |
0.526 |
|
| 2013 |
Fu S, Lv Z, Gao Z, Wu H, Pang J, Zhang B, Dong Q, Guo X, Wang XJ, Birchler JA, Han F. De novo centromere formation on a chromosome fragment in maize. Proceedings of the National Academy of Sciences of the United States of America. 110: 6033-6. PMID 23530217 DOI: 10.1073/Pnas.1303944110 |
0.543 |
|
| 2013 |
Gaeta RT, Masonbrink RE, Zhao C, Sanyal A, Krishnaswamy L, Birchler JA. In vivo modification of a maize engineered minichromosome. Chromosoma. 122: 221-32. PMID 23519820 DOI: 10.1007/S00412-013-0403-3 |
0.791 |
|
| 2013 |
Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110 |
0.583 |
|
| 2013 |
Kanizay LB, Albert PS, Birchler JA, Dawe RK. Intragenomic conflict between the two major knob repeats of maize. Genetics. 194: 81-9. PMID 23457233 DOI: 10.1534/Genetics.112.148882 |
0.486 |
|
| 2013 |
Birchler JA. Aneuploidy in plants and flies: the origin of studies of genomic imbalance. Seminars in Cell & Developmental Biology. 24: 315-9. PMID 23422884 DOI: 10.1016/J.Semcdb.2013.02.004 |
0.523 |
|
| 2013 |
Sun L, Fernandez HR, Donohue RC, Li J, Cheng J, Birchler JA. Male-specific lethal complex in Drosophila counteracts histone acetylation and does not mediate dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 110: E808-17. PMID 23382189 DOI: 10.1073/Pnas.1222542110 |
0.366 |
|
| 2013 |
Yao H, Dogra Gray A, Auger DL, Birchler JA. Genomic dosage effects on heterosis in triploid maize. Proceedings of the National Academy of Sciences of the United States of America. 110: 2665-9. PMID 23359717 DOI: 10.1073/Pnas.1221966110 |
0.4 |
|
| 2013 |
Masonbrink RE, Fu S, Han F, Birchler JA. Heritable loss of replication control of a minichromosome derived from the B chromosome of maize. Genetics. 193: 77-84. PMID 23114381 DOI: 10.1534/Genetics.112.146126 |
0.809 |
|
| 2013 |
Gaeta RT, Birchler JA. Engineered Plant Chromosomes Plant Centromere Biology. 183-192. DOI: 10.1002/9781118525715.ch14 |
0.366 |
|
| 2012 |
Birchler JA. Messing with Mendel. Developmental Cell. 23: 678-9. PMID 23079594 DOI: 10.1016/J.Devcel.2012.10.004 |
0.311 |
|
| 2012 |
Birchler JA. Insights from paleogenomic and population studies into the consequences of dosage sensitive gene expression in plants. Current Opinion in Plant Biology. 15: 544-8. PMID 22939251 DOI: 10.1016/J.Pbi.2012.08.005 |
0.427 |
|
| 2012 |
Birchler JA, Veitia RA. Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines. Proceedings of the National Academy of Sciences of the United States of America. 109: 14746-53. PMID 22908297 DOI: 10.1073/Pnas.1207726109 |
0.378 |
|
| 2012 |
Masonbrink RE, Birchler JA. Accumulation of multiple copies of maize minichromosomes. Cytogenetic and Genome Research. 137: 50-9. PMID 22832003 DOI: 10.1159/000339615 |
0.81 |
|
| 2012 |
Yu C, Han F, Zhang J, Birchler J, Peterson T. A transgenic system for generation of transposon Ac/Ds-induced chromosome rearrangements in rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 125: 1449-62. PMID 22798058 DOI: 10.1007/S00122-012-1925-4 |
0.539 |
|
| 2012 |
Xie W, Birchler JA. Identification of Inverse Regulator-a (Inr-a) as Synonymous with Pre-mRNA Cleavage Complex II Protein (Pcf11) in Drosophila. G3 (Bethesda, Md.). 2: 701-6. PMID 22690379 DOI: 10.1534/G3.112.002071 |
0.386 |
|
| 2012 |
Masonbrink RE, Gaeta RT, Birchler JA. Multiple maize minichromosomes in meiosis. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 395-402. PMID 22552914 DOI: 10.1007/S10577-012-9283-2 |
0.794 |
|
| 2012 |
Birchler JA, Presting GG. Retrotransposon insertion targeting: a mechanism for homogenization of centromere sequences on nonhomologous chromosomes. Genes & Development. 26: 638-40. PMID 22474258 DOI: 10.1101/Gad.191049.112 |
0.453 |
|
| 2012 |
Fu S, Gao Z, Birchler J, Han F. Dicentric chromosome formation and epigenetics of centromere formation in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 39: 125-30. PMID 22464471 DOI: 10.1016/J.Jgg.2012.01.006 |
0.549 |
|
| 2012 |
Birchler JA. Claims and counterclaims of X-chromosome compensation. Nature Structural & Molecular Biology. 19: 3-5. PMID 22218288 DOI: 10.1038/Nsmb.2218 |
0.459 |
|
| 2012 |
Gaeta RT, Masonbrink RE, Krishnaswamy L, Zhao C, Birchler JA. Synthetic chromosome platforms in plants. Annual Review of Plant Biology. 63: 307-30. PMID 22136564 DOI: 10.1146/Annurev-Arplant-042110-103924 |
0.806 |
|
| 2011 |
Birchler JA, Veitia RA. Protein-Protein and Protein-DNA Dosage Balance and Differential Paralog Transcription Factor Retention in Polyploids. Frontiers in Plant Science. 2: 64. PMID 22645545 DOI: 10.3389/Fpls.2011.00064 |
0.334 |
|
| 2011 |
Findley SD, Pappas AL, Cui Y, Birchler JA, Palmer RG, Stacey G. Fluorescence in situ hybridization-based karyotyping of soybean translocation lines. G3 (Bethesda, Md.). 1: 117-29. PMID 22384324 DOI: 10.1534/G3.111.000034 |
0.543 |
|
| 2011 |
Gao Z, Fu S, Dong Q, Han F, Birchler JA. Inactivation of a centromere during the formation of a translocation in maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 19: 755-61. PMID 21947957 DOI: 10.1007/S10577-011-9240-5 |
0.55 |
|
| 2011 |
Birchler J, Sun L, Fernandez H, Donohue R, Xie W, Sanyal A. Re-evaluation of the function of the male specific lethal complex in Drosophila. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 327-32. PMID 21867958 DOI: 10.1016/J.Jgg.2011.07.001 |
0.441 |
|
| 2011 |
Koo DH, Han F, Birchler JA, Jiang J. Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome. Genome Research. 21: 908-14. PMID 21518739 DOI: 10.1101/Gr.116202.110 |
0.466 |
|
| 2011 |
Gaeta RT, Danilova TV, Zhao C, Masonbrink RE, McCaw ME, Birchler JA. Recovery of a telomere-truncated chromosome via a compensating translocation in maize. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 54: 184-95. PMID 21423281 DOI: 10.1139/G10-108 |
0.802 |
|
| 2011 |
Birchler JA, Gao Z, Sharma A, Presting GG, Han F. Epigenetic aspects of centromere function in plants. Current Opinion in Plant Biology. 14: 217-22. PMID 21411364 DOI: 10.1016/J.Pbi.2011.02.004 |
0.486 |
|
| 2011 |
Yao H, Kato A, Mooney B, Birchler JA. Phenotypic and gene expression analyses of a ploidy series of maize inbred Oh43. Plant Molecular Biology. 75: 237-51. PMID 21188620 DOI: 10.1007/S11103-010-9722-4 |
0.36 |
|
| 2011 |
Kato A, Lamb JC, Albert PS, Danilova T, Han F, Gao Z, Findley S, Birchler JA. Chromosome painting for plant biotechnology. Methods in Molecular Biology (Clifton, N.J.). 701: 67-96. PMID 21181525 DOI: 10.1007/978-1-61737-957-4_4 |
0.533 |
|
| 2011 |
Birchler JA, Sun L, Donohue R, Sanyal A, Xie W. Implications of the gene balance hypothesis for dosage compensation Frontiers in Biology. 6: 118-124. DOI: 10.1007/S11515-011-1121-Y |
0.397 |
|
| 2011 |
Yin W, Birchler JA, Han F. Maize centromeres: Where sequence meets epigenetics Frontiers in Biology. 6: 102-108. DOI: 10.1007/S11515-011-1118-6 |
0.443 |
|
| 2010 |
Roark LM, Hui AY, Donnelly L, Birchler JA, Newton KJ. Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes. Cytogenetic and Genome Research. 129: 17-23. PMID 20628248 DOI: 10.1159/000312724 |
0.489 |
|
| 2010 |
Yu C, Danilova T, Zhang J, Birchler J, Peterson T. Constructing defined chromosome segmental duplications in maize. Cytogenetic and Genome Research. 129: 72-81. PMID 20551616 DOI: 10.1159/000314554 |
0.546 |
|
| 2010 |
Albert PS, Gao Z, Danilova TV, Birchler JA. Diversity of chromosomal karyotypes in maize and its relatives. Cytogenetic and Genome Research. 129: 6-16. PMID 20551613 DOI: 10.1159/000314342 |
0.514 |
|
| 2010 |
Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics. 185: 727-44. PMID 20421607 DOI: 10.1534/Genetics.109.113753 |
0.516 |
|
| 2010 |
Masonbrink RE, Birchler JA. Sporophytic nondisjunction of the maize B chromosome at high copy numbers. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 37: 79-84. PMID 20171580 DOI: 10.1016/S1673-8527(09)60027-8 |
0.772 |
|
| 2010 |
Birchler JA. Reflections on studies of gene expression in aneuploids. The Biochemical Journal. 426: 119-23. PMID 20141513 DOI: 10.1042/Bj20091617 |
0.409 |
|
| 2010 |
Birchler JA, Veitia RA. The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. The New Phytologist. 186: 54-62. PMID 19925558 DOI: 10.1111/J.1469-8137.2009.03087.X |
0.36 |
|
| 2010 |
Veitia RA, Birchler JA. Dominance and gene dosage balance in health and disease: why levels matter! The Journal of Pathology. 220: 174-85. PMID 19827001 DOI: 10.1002/Path.2623 |
0.323 |
|
| 2010 |
Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 341-53. PMID 19657617 DOI: 10.1007/S00122-009-1113-3 |
0.707 |
|
| 2010 |
Guo M, Birchler JA. Trans-acting dosage effects on the expression of model gene systems in maize aneuploids. Science (New York, N.Y.). 266: 1999-2002. PMID 17836517 DOI: 10.1126/Science.266.5193.1999 |
0.513 |
|
| 2010 |
Birchler JA. X chromosome dosage compensation in Drosophila. Science (New York, N.Y.). 272: 1190a. PMID 17792629 DOI: 10.1126/Science.272.5265.1190A |
0.467 |
|
| 2010 |
Birchler JA, Krishnaswamy L, Gaeta RT, Masonbrink RE, Zhao C. Engineered minichromosomes in plants Critical Reviews in Plant Sciences. 29: 135-147. DOI: 10.1080/07352681003709918 |
0.687 |
|
| 2009 |
Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo DH, Shi J, Gao Z, Han F, Lee H, Xu R, Allison J, Birchler JA, Jiang J, Dawe RK, Presting GG. Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons. Plos Genetics. 5: e1000743. PMID 19956743 DOI: 10.1371/Journal.Pgen.1000743 |
0.438 |
|
| 2009 |
Birchler JA, Gao Z, Han F. Pairing in plants: Import is important. Proceedings of the National Academy of Sciences of the United States of America. 106: 19751-2. PMID 19923432 DOI: 10.1073/Pnas.0911849106 |
0.517 |
|
| 2009 |
Kavi HH, Birchler JA. Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization. Bmc Research Notes. 2: 217. PMID 19852816 DOI: 10.1186/1756-0500-2-217 |
0.407 |
|
| 2009 |
Birchler JA, Han F. Maize centromeres: structure, function, epigenetics. Annual Review of Genetics. 43: 287-303. PMID 19689211 DOI: 10.1146/Annurev-Genet-102108-134834 |
0.497 |
|
| 2009 |
Han F, Gao Z, Birchler JA. Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. The Plant Cell. 21: 1929-39. PMID 19602622 DOI: 10.1105/Tpc.109.066662 |
0.521 |
|
| 2009 |
Sun X, Birchler JA. Interaction study of the male specific lethal (MSL) complex and trans-acting dosage effects in metafemales of Drosophila melanogaster. Cytogenetic and Genome Research. 124: 298-311. PMID 19556782 DOI: 10.1159/000218134 |
0.373 |
|
| 2009 |
Sun X, Birchler JA. Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila. Cytogenetic and Genome Research. 124: 158-69. PMID 19420929 DOI: 10.1159/000207524 |
0.47 |
|
| 2009 |
Zhang J, Yu C, Pulletikurti V, Lamb J, Danilova T, Weber DF, Birchler J, Peterson T. Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize. Genes & Development. 23: 755-65. PMID 19299561 DOI: 10.1101/Gad.1776909 |
0.504 |
|
| 2009 |
Birchler JA. Dosage compensation for the birds. Heredity. 102: 423-4. PMID 19223922 DOI: 10.1038/Hdy.2008.134 |
0.497 |
|
| 2009 |
Birchler JA, Gao Z, Han F. A tale of two centromeres--diversity of structure but conservation of function in plants and animals. Functional & Integrative Genomics. 9: 7-13. PMID 19083033 DOI: 10.1007/S10142-008-0104-9 |
0.421 |
|
| 2009 |
Birchler JA. Role of small RNAs in establishing chromosomal architecture in drosophila Epigenomics. 177-185. DOI: 10.1007/978-1-4020-9187-2_11 |
0.324 |
|
| 2009 |
Birchler JA, Bass HW. Cytogenetics and chromosomal structural diversity Handbook of Maize: Genetics and Genomics. 163-177. DOI: 10.1007/978-0-387-77863-1_8 |
0.388 |
|
| 2008 |
Jin W, Lamb JC, Zhang W, Kolano B, Birchler JA, Jiang J. Histone modifications associated with both A and B chromosomes of maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 1203-14. PMID 18987983 DOI: 10.1007/S10577-008-1269-8 |
0.511 |
|
| 2008 |
Lamb JC, Yu W, Han F, Birchler JA. Plant centromeres. Genome Dynamics. 4: 95-107. PMID 18756080 DOI: 10.1159/000126009 |
0.36 |
|
| 2008 |
Veitia RA, Bottani S, Birchler JA. Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects. Trends in Genetics : Tig. 24: 390-7. PMID 18585818 DOI: 10.1016/J.Tig.2008.05.005 |
0.379 |
|
| 2008 |
Birchler JA, Yu W, Han F. Plant engineered minichromosomes and artificial chromosome platforms. Cytogenetic and Genome Research. 120: 228-32. PMID 18504351 DOI: 10.1159/000121071 |
0.537 |
|
| 2008 |
Danilova TV, Birchler JA. Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution, sensitivity, and banding paint development. Chromosoma. 117: 345-56. PMID 18317793 DOI: 10.1007/S00412-008-0151-Y |
0.501 |
|
| 2008 |
Vega JM, Yu W, Han F, Kato A, Peters EM, Zhang ZJ, Birchler JA. Agrobacterium-mediated transformation of maize (Zea mays) with Cre-lox site specific recombination cassettes in BIBAC vectors. Plant Molecular Biology. 66: 587-98. PMID 18265944 DOI: 10.1007/S11103-007-9276-2 |
0.55 |
|
| 2008 |
Lough AN, Roark LM, Kato A, Ream TS, Lamb JC, Birchler JA, Newton KJ. Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize. Genetics. 178: 47-55. PMID 18202357 DOI: 10.1534/Genetics.107.079624 |
0.484 |
|
| 2008 |
Riddle NC, Birchler JA. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 563-76. PMID 18080809 DOI: 10.1007/S00122-007-0691-1 |
0.699 |
|
| 2008 |
Birchler JA. B chromosomes in plants Access Science. DOI: 10.1036/1097-8542.Yb081820 |
0.545 |
|
| 2008 |
Yu W, Birchler JA. Application of plant artificial chromosomes in biotechnology Journal of Biotechnology. 136: S239. DOI: 10.1016/J.Jbiotec.2008.07.507 |
0.491 |
|
| 2007 |
Han F, Gao Z, Yu W, Birchler JA. Minichromosome analysis of chromosome pairing, disjunction, and sister chromatid cohesion in maize. The Plant Cell. 19: 3853-63. PMID 18083907 DOI: 10.1105/Tpc.107.055905 |
0.54 |
|
| 2007 |
Yu W, Han F, Birchler JA. Engineered minichromosomes in plants. Current Opinion in Biotechnology. 18: 425-31. PMID 17977710 DOI: 10.1036/1097-8542.Yb090068 |
0.432 |
|
| 2007 |
Yu W, Han F, Gao Z, Vega JM, Birchler JA. Construction and behavior of engineered minichromosomes in maize. Proceedings of the National Academy of Sciences of the United States of America. 104: 8924-9. PMID 17502617 DOI: 10.1073/Pnas.0700932104 |
0.571 |
|
| 2007 |
Lamb JC, Riddle NC, Cheng YM, Theuri J, Birchler JA. Localization and transcription of a retrotransposon-derived element on the maize B chromosome. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 383-98. PMID 17429746 DOI: 10.1007/S10577-007-1135-0 |
0.764 |
|
| 2007 |
Han F, Lamb JC, Yu W, Gao Z, Birchler JA. Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism. The Plant Cell. 19: 524-33. PMID 17322406 DOI: 10.1105/Tpc.106.049577 |
0.55 |
|
| 2007 |
Lamb JC, Meyer JM, Corcoran B, Kato A, Han F, Birchler JA. Distinct chromosomal distributions of highly repetitive sequences in maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 33-49. PMID 17295125 DOI: 10.1007/S10577-006-1102-1 |
0.53 |
|
| 2007 |
Birchler JA, Veitia RA. The gene balance hypothesis: from classical genetics to modern genomics. The Plant Cell. 19: 395-402. PMID 17293565 DOI: 10.1105/Tpc.106.049338 |
0.441 |
|
| 2007 |
Lamb JC, Yu W, Han F, Birchler JA. Plant chromosomes from end to end: telomeres, heterochromatin and centromeres. Current Opinion in Plant Biology. 10: 116-22. PMID 17291819 DOI: 10.1016/J.Pbi.2007.01.008 |
0.492 |
|
| 2007 |
Birchler JA, Yao H, Chudalayandi S. Biological consequences of dosage dependent gene regulatory systems. Biochimica Et Biophysica Acta. 1769: 422-8. PMID 17276527 DOI: 10.1016/J.Bbaexp.2006.12.002 |
0.339 |
|
| 2007 |
Lamb JC, Meyer JM, Birchler JA. A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region. Chromosoma. 116: 237-47. PMID 17256108 DOI: 10.1007/S00412-007-0096-6 |
0.503 |
|
| 2007 |
Lamb JC, Danilova T, Bauer MJ, Meyer JM, Holland JJ, Jensen MD, Birchler JA. Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes. Genetics. 175: 1047-58. PMID 17237520 DOI: 10.1534/Genetics.106.065573 |
0.769 |
|
| 2007 |
Yu W, Lamb JC, Han F, Birchler JA. Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics. 175: 31-9. PMID 17057234 DOI: 10.1534/Genetics.106.064238 |
0.447 |
|
| 2007 |
Birchler JA, Albert PS, Gao Z. Stability of Repeated Sequence Clusters in Hybrids of Maize as Revealed by FISH Tropical Plant Biology. 1: 34-39. DOI: 10.1007/S12042-007-9001-Y |
0.454 |
|
| 2006 |
Yu W, Lamb JC, Han F, Birchler JA. Telomere-mediated chromosomal truncation in maize. Proceedings of the National Academy of Sciences of the United States of America. 103: 17331-6. PMID 17085598 DOI: 10.1073/Pnas.0605750103 |
0.555 |
|
| 2006 |
Riddle NC, Kato A, Birchler JA. Genetic variation for the response to ploidy change in Zea mays L. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 101-11. PMID 17053922 DOI: 10.1007/S00122-006-0414-Z |
0.658 |
|
| 2006 |
Bhadra MP, Bhadra U, Birchler JA. Misregulation of sex-lethal and disruption of male-specific lethal complex localization in drosophila species hybrids Genetics. 174: 1151-1159. PMID 16951071 DOI: 10.1534/Genetics.106.060541 |
0.422 |
|
| 2006 |
Birchler JA, Yao H, Chudalayandi S. Unraveling the genetic basis of hybrid vigor Proceedings of the National Academy of Sciences of the United States of America. 103: 12957-12958. PMID 16938847 DOI: 10.1073/Pnas.0605627103 |
0.359 |
|
| 2006 |
Yu W, Han F, Kato A, Birchler JA. Characterization of a maize isochromosome 8S•8S Genome. 49: 700-706. PMID 16936849 DOI: 10.1139/G06-019 |
0.564 |
|
| 2006 |
Kavi HH, Fernandez HR, Xie W, Birchler JA. Polycomb, pairing and PIWI--RNA silencing and nuclear interactions. Trends in Biochemical Sciences. 31: 485-7. PMID 16876419 DOI: 10.1016/J.Tibs.2006.07.002 |
0.31 |
|
| 2006 |
Bauer MJ, Birchler JA. Organization of endoreduplicated chromosomes in the endosperm of Zea mays L. Chromosoma. 115: 383-94. PMID 16741707 DOI: 10.1007/S00412-006-0068-2 |
0.766 |
|
| 2006 |
Birchler JA, Fernandez HR, Kavi HH. Commonalities in compensation Bioessays. 28: 565-568. PMID 16700062 DOI: 10.1002/Bies.20408 |
0.467 |
|
| 2006 |
Lamb JC, Birchler JA. Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum. Genetics. 173: 1007-21. PMID 16582446 DOI: 10.1534/Genetics.105.053165 |
0.512 |
|
| 2006 |
Han F, Lamb JC, Birchler JA. High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize. Proceedings of the National Academy of Sciences of the United States of America. 103: 3238-43. PMID 16492777 DOI: 10.1073/Pnas.0509650103 |
0.567 |
|
| 2006 |
Kato A, Birchler JA. Induction of tetraploid derivatives of maize inbred lines by nitrous oxide gas treatment Journal of Heredity. 97: 39-44. PMID 16394254 DOI: 10.1093/Jhered/Esj007 |
0.323 |
|
| 2005 |
Kavi HH, Xie W, Fernandez HR, Birchler JA. Global analysis of siRNA-mediated transcriptional gene silencing. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 1209-12. PMID 16299769 DOI: 10.1002/Bies.20328 |
0.357 |
|
| 2005 |
Auger DL, Peters EM, Birchler JA. A genetic test of bioactive gibberellins as regulators of heterosis in maize. The Journal of Heredity. 96: 614-7. PMID 16135703 DOI: 10.1093/Jhered/Esi102 |
0.387 |
|
| 2005 |
Theuri J, Phelps-Durr T, Mathews S, Birchler J. A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize Cytogenetic and Genome Research. 110: 203-208. PMID 16093673 DOI: 10.1159/000084953 |
0.512 |
|
| 2005 |
Della Vedova CB, Lorbiecke R, Kirsch H, Schulte MB, Scheets K, Borchert LM, Scheffler BE, Wienand U, Cone KC, Birchler JA. The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism. Genetics. 170: 1989-2002. PMID 15956664 DOI: 10.1534/Genetics.105.043406 |
0.759 |
|
| 2005 |
Ream TS, Strobel J, Roller B, Auger DL, Kato A, Halbrook C, Peters EM, Theuri J, Bauer MJ, Addae P, Dioh W, Staub JM, Gilbertson LA, Birchler JA. A test for ectopic exchange catalyzed by Cre recombinase in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 378-85. PMID 15912343 DOI: 10.1007/S00122-005-2031-7 |
0.741 |
|
| 2005 |
Jin W, Lamb JC, Vega JM, Dawe RK, Birchler JA, Jiang J. Molecular and functional dissection of the maize B chromosome centromere. The Plant Cell. 17: 1412-23. PMID 15805482 DOI: 10.1105/Tpc.104.030643 |
0.459 |
|
| 2005 |
Birchler JA, Riddle NC, Auger DL, Veitia RA. Dosage balance in gene regulation: biological implications. Trends in Genetics : Tig. 21: 219-26. PMID 15797617 DOI: 10.1016/J.Tig.2005.02.010 |
0.727 |
|
| 2005 |
Kato A, Zheng YZ, Auger DL, Phelps-Durr T, Bauer MJ, Lamb JC, Birchler JA. Minichromosomes derived from the B chromosome of maize Cytogenetic and Genome Research. 109: 156-165. PMID 15753572 DOI: 10.1159/000082395 |
0.534 |
|
| 2005 |
Kato A, Vega JM, Han F, Lamb JC, Birchler JA. Advances in plant chromosome identification and cytogenetic techniques. Current Opinion in Plant Biology. 8: 148-54. PMID 15752994 DOI: 10.1016/J.Pbi.2005.01.014 |
0.537 |
|
| 2005 |
Bhadra MP, Bhadra U, Kundu J, Birchler JA. Gene expression analysis of the function of the male-specific lethal complex in Drosophila. Genetics. 169: 2061-74. PMID 15716510 DOI: 10.1534/Genetics.104.036020 |
0.386 |
|
| 2005 |
Matzke MA, Birchler JA. RNAi-mediated pathways in the nucleus Nature Reviews Genetics. 6: 24-35. PMID 15630419 DOI: 10.1038/Nrg1500 |
0.341 |
|
| 2005 |
Lamb JC, Kato A, Birchler JA. Sequences associated with A chromosome centromeres are present throughout the maize B chromosome. Chromosoma. 113: 337-49. PMID 15586285 DOI: 10.1007/S00412-004-0319-Z |
0.541 |
|
| 2005 |
Auger DL, Gray AD, Ream TS, Kato A, Coe EH, Birchler JA. Nonadditive gene expression in diploid and triploid hybrids of maize Genetics. 169: 389-397. PMID 15489529 DOI: 10.1534/Genetics.104.032987 |
0.431 |
|
| 2004 |
Lamb JC, Theuri J, Birchler JA. What's in a centromere? Genome Biology. 5: 239. PMID 15345039 DOI: 10.1186/Gb-2004-5-9-239 |
0.34 |
|
| 2004 |
Kato A, Lamb JC, Birchler JA. Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 13554-9. PMID 15342909 DOI: 10.1073/Pnas.0403659101 |
0.528 |
|
| 2004 |
Phelps-Durr TL, Birchler JA. An asymptotic determination of minimum centromere size for the maize B chromosome Cytogenetic and Genome Research. 106: 309-313. PMID 15292608 DOI: 10.1159/000079304 |
0.79 |
|
| 2004 |
Birchler JA, Newton KJ. Discovering the seeds of diversity in plant genomes Genome Biology. 5. PMID 15128442 DOI: 10.1186/Gb-2004-5-5-323 |
0.347 |
|
| 2004 |
Auger DL, Ream TS, Birchler JA. A test for a metastable epigenetic component of heterosis using haploid induction in maize Theoretical and Applied Genetics. 108: 1017-1023. PMID 15067387 DOI: 10.1007/S00122-003-1521-8 |
0.341 |
|
| 2004 |
Pal-Bhadra M, Leibovitch BA, Gandhi SG, Chikka MR, Rao M, Bhadra U, Birchler JA, Elgin SC. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science (New York, N.Y.). 303: 669-72. PMID 14752161 DOI: 10.1126/Science.1092653 |
0.55 |
|
| 2003 |
Jiang J, Birchler JA, Parrott WA, Dawe RK. A molecular view of plant centromeres Trends in Plant Science. 8: 570-575. PMID 14659705 DOI: 10.1016/J.Tplants.2003.10.011 |
0.352 |
|
| 2003 |
Riddle NC, Birchler JA. Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends in Genetics : Tig. 19: 597-600. PMID 14585608 DOI: 10.1016/J.Tig.2003.09.005 |
0.708 |
|
| 2003 |
Birchler JA, Auger DL, Riddle NC. In search of the molecular basis of heterosis. The Plant Cell. 15: 2236-9. PMID 14523245 DOI: 10.1105/Tpc.151030 |
0.647 |
|
| 2003 |
Lamb JC, Birchler JA. The role of DNA sequence in centromere formation. Genome Biology. 4: 214. PMID 12734002 DOI: 10.1186/Gb-2003-4-5-214 |
0.312 |
|
| 2003 |
Birchler JA, Pal-Bhadra M, Bhadra U. Dosage dependent gene regulation and the compensation of the X chromosome in Drosophila males Genetica. 117: 179-190. PMID 12723697 DOI: 10.1023/A:1022935927763 |
0.471 |
|
| 2003 |
Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5 |
0.367 |
|
| 2003 |
Riddle NC, Birchler JA. Book Review:The Role of Chromosomal Change in Plant Evolution Bioessays. 25: 918-919. DOI: 10.1002/Bies.10334 |
0.729 |
|
| 2002 |
Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK. Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. The Plant Cell. 14: 2825-36. PMID 12417704 DOI: 10.1105/Tpc.006106 |
0.378 |
|
| 2002 |
Kaszás É, Kato A, Birchler JA. Cytological and molecular analysis of centromere misdivision in maize Genome. 45: 759-768. PMID 12175080 DOI: 10.1139/G02-023 |
0.537 |
|
| 2002 |
Auger DL, Birchler JA. Maize tertiary trisomic stocks derived from B-A translocations Journal of Heredity. 93: 42-47. PMID 12011174 DOI: 10.1093/Jhered/93.1.42 |
0.522 |
|
| 2002 |
Pal-Bhadra M, Bhadra U, Birchler JA. RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila Molecular Cell. 9: 315-327. PMID 11864605 DOI: 10.1016/S1097-2765(02)00440-9 |
0.321 |
|
| 2001 |
Cooper JL, Birchler JA. Developmental impact on trans-acting dosage effects in maize aneuploids Genesis. 31: 64-71. PMID 11668680 DOI: 10.1002/Gene.10006 |
0.418 |
|
| 2001 |
Birchler JA, Bhadra U, Bhadra MP, Auger DL. Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits Developmental Biology. 234: 275-288. PMID 11396999 DOI: 10.1006/Dbio.2001.0262 |
0.46 |
|
| 2000 |
Benevolenskaya EV, Frolov MV, Birchler JA. Kruppel homolog (Kr h) is a dosage-dependent modifier of gene expression in Drosophila Genetical Research. 75: 137-142. PMID 10816971 DOI: 10.1017/S0016672399004437 |
0.305 |
|
| 2000 |
Birchler JA, Pal Bhadra M, Bhadra U. Making noise about silence: Repression of repeated genes in animals Current Opinion in Genetics and Development. 10: 211-216. PMID 10753783 DOI: 10.1016/S0959-437X(00)00065-4 |
0.336 |
|
| 1999 |
Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression of nonhomologous transgenes in Drosophila involves mutually related endogenous sequences Cell. 99: 35-46. PMID 10520992 DOI: 10.1016/S0092-8674(00)80060-4 |
0.365 |
|
| 1999 |
Birchler J, Langdale J, Chandler V. Jumping genes and maize genomics. Trends in Plant Science. 4: 205-206. PMID 10366873 DOI: 10.1016/S1360-1385(99)01422-3 |
0.362 |
|
| 1998 |
Benevolenskaya EV, Frolov MV, Birchler JA. The sugarless mutation affects the expression of the white eye color gene in Drosophila melanogaster Molecular and General Genetics. 260: 131-143. PMID 9862465 DOI: 10.1007/S004380050879 |
0.332 |
|
| 1998 |
Pal Bhadra M, Bhadra U, Birchler JA. Role of multiple trans-acting regulators in modifying the effect of the retrotransposon copia on host gene expression in Drosophila Molecular and General Genetics. 259: 198-206. PMID 9747711 DOI: 10.1007/S004380050805 |
0.322 |
|
| 1997 |
Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression in Drosophila: Gene silencing of Alcohol dehydrogenase by white-Adh transgenes is Polycomb dependent Cell. 90: 479-490. PMID 9267028 DOI: 10.1016/S0092-8674(00)80508-5 |
0.37 |
|
| 1997 |
Bhadra U, Pal-Bhadra M, Birchler JA. A trans-acting modifier causing extensive overexpression of genes in Drosophila melanogaster Molecular and General Genetics. 254: 621-634. PMID 9202378 DOI: 10.1007/S004380050460 |
0.371 |
|
| 1997 |
Guo M, Birchler JA. Dosage regulation of Zea mays homeobox (ZmHox) genes and their relationship with the dosage-sensitive regulatory factors of Shrunken 1 (Sh1) in maize Developmental Genetics. 20: 67-73. DOI: 10.1002/(Sici)1520-6408(1997)20:1<67::Aid-Dvg8>3.0.Co;2-7 |
0.352 |
|
| 1996 |
Bhadra U, Birchler JA. Characterization of a sex-influenced modifier of gene expression and suppressor of position-effect variegation in Drosophila. Molecular & General Genetics : Mgg. 250: 601-13. PMID 8676863 DOI: 10.1007/Bf02174448 |
0.309 |
|
| 1996 |
Kaszás E, Birchler JA. Misdivision analysis of centromere structure in maize. The Embo Journal. 15: 5246-5255. DOI: 10.1002/J.1460-2075.1996.Tb00910.X |
0.492 |
|
| 1993 |
Sabl JF, Birchler JA. Dosage dependent modifiers of white alleles in Drosophila melanogaster. Genetical Research. 62: 15-22. PMID 8405989 DOI: 10.1017/S0016672300031517 |
0.313 |
|
| 1992 |
Birchler JA. Expression of cis-regulatory mutations of the white locus in metafemales of Drosophila melanogaster. Genetical Research. 59: 11-8. PMID 1572532 DOI: 10.1017/S0016672300030123 |
0.319 |
|
| 1991 |
Birchler JA. Chromosome Manipulations in Maize Developments in Plant Genetics and Breeding. 2: 531-559. DOI: 10.1016/B978-0-444-88259-2.50030-8 |
0.535 |
|
| 1989 |
Birchler JA, Hiebert JC, Rabinow L. Interaction of the mottler of white with transposable element alleles at the white locus in Drosophila melanogaster. Genes & Development. 3: 73-84. PMID 2540060 DOI: 10.1101/Gad.3.1.73 |
0.374 |
|
| 1984 |
Birchler JA. Genetic analysis of the sexual dimorphism of glass in Drosophila melanogaster Genetical Research. 44: 125-132. DOI: 10.1017/S0016672300026331 |
0.407 |
|
| 1983 |
Birchler JA. Allozymes in Gene Dosage Studies Developments in Plant Genetics and Breeding. 1: 85-108. DOI: 10.1016/B978-0-444-42226-2.50010-4 |
0.304 |
|
| 1980 |
Birchler JA. On the nonautonomy of the small-kernel phenotype produced by B–A translocations in maize Genetical Research. 36: 111-116. DOI: 10.1017/S0016672300019716 |
0.421 |
|
| 1979 |
Birchler JA, Schwartz D. Mutational study of the alcohol dehydrogenase-1 FCm duplication in maize. Biochemical Genetics. 17: 1173-80. PMID 395948 DOI: 10.1007/Bf00504355 |
0.562 |
|
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