| Year |
Citation |
Score |
| 2023 |
Church SH, Mah JL, Wagner G, Dunn CW. Normalizing need not be the norm: count-based math for analyzing single-cell data. Theory in Biosciences = Theorie in Den Biowissenschaften. PMID 37947999 DOI: 10.1007/s12064-023-00408-x |
0.781 |
|
| 2022 |
Ma X, Dighe A, Maziarz J, Neumann E, Erkenbrack E, Hei YY, Liu Y, Suhail Y, Pak I, Levchenko A, Wagner GP. Evolution of higher mesenchymal CD44 expression in the human lineage: A gene linked to cancer malignancy. Evolution, Medicine, and Public Health. 10: 447-462. PMID 36148042 DOI: 10.1093/emph/eoac036 |
0.739 |
|
| 2022 |
Stadtmauer DJ, Wagner GP. Single-cell analysis of prostaglandin E2-induced human decidual cell in vitro differentiation: a minimal ancestral deciduogenic signal†. Biology of Reproduction. 106: 155-172. PMID 34591094 DOI: 10.1093/biolre/ioab183 |
0.794 |
|
| 2021 |
Lynch VJ, Wagner GP. Cooption of polyalanine tract into a repressor domain in the mammalian transcription factor HoxA11. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 34125492 DOI: 10.1002/jez.b.23063 |
0.539 |
|
| 2021 |
Smith-Paredes D, Griffith O, Fabbri M, Yohe L, Blackburn DG, Siler CD, Bhullar BS, Wagner GP. Hidden limbs in the "limbless skink" Brachymeles lukbani: Developmental observations. Journal of Anatomy. PMID 33870497 DOI: 10.1111/joa.13447 |
0.492 |
|
| 2020 |
Chavan AR, Griffith OW, Stadtmauer D, Maziarz J, Pavlicev M, Fishman R, Koren L, Romero R, Wagner GP. Evolution of embryo implantation was enabled by the origin of decidual stromal cells in eutherian mammals. Molecular Biology and Evolution. PMID 33185661 DOI: 10.1093/molbev/msaa274 |
0.787 |
|
| 2020 |
Stadtmauer DJ, Wagner GP. The Primacy of Maternal Innovations to the Evolution of Embryo Implantation. Integrative and Comparative Biology. PMID 32525521 DOI: 10.1093/icb/icaa030 |
0.774 |
|
| 2020 |
Kshitiz, Afzal J, Maziarz JD, Hamidzadeh A, Liang C, Erkenbrack EM, Kim HN, Haeger JD, Pfarrer C, Hoang T, Ott T, Spencer T, Pavličev M, Antczak DF, Levchenko A, ... Wagner GP, et al. Author Correction: Evolution of placental invasion and cancer metastasis are causally linked. Nature Ecology & Evolution. PMID 31949306 DOI: 10.1038/S41559-020-1100-2 |
0.705 |
|
| 2019 |
Stadtmauer DJ, Wagner GP. Cooperative inflammation: The recruitment of inflammatory signaling in marsupial and eutherian pregnancy. Journal of Reproductive Immunology. 137: 102626. PMID 31783286 DOI: 10.1016/j.jri.2019.102626 |
0.77 |
|
| 2019 |
Kshitiz, Afzal J, Maziarz JD, Hamidzadeh A, Liang C, Erkenbrack EM, Nam H, Haeger JD, Pfarrer C, Hoang T, Ott T, Spencer T, Pavličev M, Antczak DF, Levchenko A, ... Wagner GP, et al. Evolution of placental invasion and cancer metastasis are causally linked. Nature Ecology & Evolution. PMID 31768023 DOI: 10.1038/S41559-019-1046-4 |
0.732 |
|
| 2019 |
Griffith OW, Chavan AR, Pavlicev M, Protopapas S, Callahan R, Maziarz J, Wagner GP. Endometrial recognition of pregnancy occurs in the grey short-tailed opossum ( Monodelphis domestica). Proceedings. Biological Sciences. 286: 20190691. PMID 31213185 DOI: 10.1098/Rspb.2019.0691 |
0.796 |
|
| 2019 |
Wagner GP, Erkenbrack EM, Love AC. Stress-Induced Evolutionary Innovation: A Mechanism for the Origin of Cell Types. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 41: e1800188. PMID 30919472 DOI: 10.1002/Bies.201800188 |
0.74 |
|
| 2018 |
Rytkönen KT, Erkenbrack EM, Poutanen M, Elo LL, Pavlicev M, Wagner GP. Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs. Reproductive Sciences (Thousand Oaks, Calif.). 1933719118802056. PMID 30309298 DOI: 10.1177/1933719118802056 |
0.768 |
|
| 2018 |
Erkenbrack EM, Maziarz JD, Griffith OW, Liang C, Chavan AR, Nnamani MC, Wagner GP. The mammalian decidual cell evolved from a cellular stress response. Plos Biology. 16: e2005594. PMID 30142145 DOI: 10.1371/Journal.Pbio.2005594 |
0.783 |
|
| 2018 |
Wagner GP, Griffith OW, Bergmann PJ, Bello-Hellegouarch G, Kohlsdorf T, Bhullar A, Siler CD. Are there general laws for digit evolution in squamates? The loss and re-evolution of digits in a clade of fossorial lizards (Brachymeles, Scincinae). Journal of Morphology. PMID 29884998 DOI: 10.1002/Jmor.20834 |
0.505 |
|
| 2018 |
Liang C, Musser JM, Cloutier A, Prum RO, Wagner GP. Pervasive correlated evolution in gene expression shapes cell and tissue type transcriptomes. Genome Biology and Evolution. PMID 29373668 DOI: 10.1093/Gbe/Evy016 |
0.728 |
|
| 2018 |
Wagner G, Erkenbrack E, Maziarz J, Chavan A. The uterine decidual stromal cell: A stabilized stress response? Journal of Reproductive Immunology. 128: 48. DOI: 10.1016/J.Jri.2018.06.023 |
0.757 |
|
| 2017 |
Griffith OW, Chavan AR, Protopapas S, Maziarz J, Romero R, Wagner GP. Reply to Liu: Inflammation before implantation both in evolution and development. Proceedings of the National Academy of Sciences of the United States of America. PMID 29233940 DOI: 10.1073/Pnas.1717001115 |
0.781 |
|
| 2017 |
Zhang G, Feenstra B, Bacelis J, Liu X, Muglia LM, Juodakis J, Miller DE, Litterman N, Jiang PP, Russell L, Hinds DA, Hu Y, Weirauch MT, Chen X, Chavan AR, ... Wagner GP, et al. Genetic Associations with Gestational Duration and Spontaneous Preterm Birth. The New England Journal of Medicine. PMID 28877031 DOI: 10.1056/Nejmoa1612665 |
0.735 |
|
| 2017 |
Chavan AR, Griffith OW, Wagner GP. The inflammation paradox in the evolution of mammalian pregnancy: turning a foe into a friend. Current Opinion in Genetics & Development. 47: 24-32. PMID 28850905 DOI: 10.1016/J.Gde.2017.08.004 |
0.792 |
|
| 2017 |
Griffith OW, Wagner GP. The placenta as a model for understanding the origin and evolution of vertebrate organs. Nature Ecology & Evolution. 1: 72. PMID 28812655 DOI: 10.1038/S41559-017-0072 |
0.537 |
|
| 2017 |
Griffith OW, Chavan AR, Protopapas S, Maziarz J, Romero R, Wagner GP. Embryo implantation evolved from an ancestral inflammatory attachment reaction. Proceedings of the National Academy of Sciences of the United States of America. PMID 28747528 DOI: 10.1073/Pnas.1701129114 |
0.787 |
|
| 2017 |
Wagner GP, Nnamani MC, Chavan AR, Maziarz J, Protopapas S, Condon J, Romero R. Evolution of Gene Expression in the Uterine Cervix related to Steroid Signaling: Conserved features in the regulation of cervical ripening. Scientific Reports. 7: 4439. PMID 28667298 DOI: 10.1038/S41598-017-04759-6 |
0.765 |
|
| 2017 |
Pavličev M, Wagner GP, Chavan AR, Owens K, Maziarz J, Dunn-Fletcher C, Kallapur SG, Muglia L, Jones H. Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface. Genome Research. PMID 28174237 DOI: 10.1101/Gr.207597.116 |
0.752 |
|
| 2016 |
Arendt D, Musser JM, Baker CV, Bergman A, Cepko C, Erwin DH, Pavlicev M, Schlosser G, Widder S, Laubichler MD, Wagner GP. The origin and evolution of cell types. Nature Reviews. Genetics. PMID 27818507 DOI: 10.1038/Nrg.2016.127 |
0.76 |
|
| 2016 |
Pavličev M, Wagner G. The Evolutionary Origin of Female Orgasm. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 27478160 DOI: 10.1002/Jez.B.22690 |
0.316 |
|
| 2016 |
Kin K, Maziarz J, Chavan AR, Kamat M, Vasudevan S, Birt A, Emera D, Lynch VJ, Ott TL, Pavlicev M, Wagner GP. The transcriptomic evolution of mammalian pregnancy: gene expression innovations in endometrial stromal fibroblasts. Genome Biology and Evolution. PMID 27401177 DOI: 10.1093/Gbe/Evw168 |
0.802 |
|
| 2016 |
Chavan AR, Wagner GP. The fetal-maternal interface of the nine-banded armadillo: endothelial cells of maternal sinus are partially replaced by trophoblast. Zoological Letters. 2: 11. PMID 27284459 DOI: 10.1186/s40851-016-0048-1 |
0.736 |
|
| 2016 |
Nnamani MC, Ganguly S, Erkenbrack EM, Lynch VJ, Mizoue LS, Tong Y, Darling HL, Fuxreiter M, Meiler J, Wagner GP. A Derived Allosteric Switch Underlies the Evolution of Conditional Cooperativity between HOXA11 and FOXO1. Cell Reports. PMID 27239043 DOI: 10.1016/J.Celrep.2016.04.088 |
0.784 |
|
| 2016 |
Chavan AR, Bhullar BA, Wagner GP. What was the ancestral function of decidual stromal cells? A model for the evolution of eutherian pregnancy. Placenta. 40: 40-51. PMID 27016782 DOI: 10.1016/J.Placenta.2016.02.012 |
0.765 |
|
| 2016 |
Stopper GF, Richards-Hrdlicka KL, Wagner GP. Hedgehog inhibition causes complete loss of limb outgrowth and transformation of digit identity in Xenopus tropicalis. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 26918681 DOI: 10.1002/Jez.B.22669 |
0.787 |
|
| 2016 |
Pavlicev M, Jones H, Owens K, Chavan A, Wagner G, Muglia L. Utero-placental cell interactions revealed by single cell transcriptomics Placenta. 45: 64. DOI: 10.1016/J.Placenta.2016.06.015 |
0.743 |
|
| 2015 |
Musser JM, Wagner GP. Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called "species signal". Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 324: 588-604. PMID 26175303 DOI: 10.1002/Jez.B.22636 |
0.599 |
|
| 2015 |
Musser JM, Wagner GP, Prum RO. Nuclear β-catenin localization supports homology of feathers, avian scutate scales, and alligator scales in early development. Evolution & Development. 17: 185-94. PMID 25963196 DOI: 10.1111/Ede.12123 |
0.669 |
|
| 2015 |
Kin K, Nnamani MC, Lynch VJ, Michaelides E, Wagner GP. Cell-type phylogenetics and the origin of endometrial stromal cells. Cell Reports. 10: 1398-409. PMID 25732829 DOI: 10.1016/J.Celrep.2015.01.062 |
0.601 |
|
| 2015 |
Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, Emera D, Sheikh SZ, Grützner F, Bauersachs S, Graf A, Young SL, Lieb JD, DeMayo FJ, Feschotte C, ... Wagner GP, et al. Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Reports. 10: 551-61. PMID 25640180 DOI: 10.1016/J.Celrep.2014.12.052 |
0.817 |
|
| 2014 |
Wagner GP, Kin K, Muglia L, Pavlicev M. Evolution of mammalian pregnancy and the origin of the decidual stromal cell. The International Journal of Developmental Biology. 58: 117-26. PMID 25023677 DOI: 10.1387/ijdb.130335gw |
0.304 |
|
| 2014 |
Lynch VJ, May G, Wagner GP. Correction: Corrigendum: Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB Nature. 508: 420-420. DOI: 10.1038/Nature13201 |
0.528 |
|
| 2013 |
Wagner GP, Kin K, Lynch VJ. A model based criterion for gene expression calls using RNA-seq data. Theory in Biosciences = Theorie in Den Biowissenschaften. 132: 159-64. PMID 23615947 DOI: 10.1007/S12064-013-0178-3 |
0.549 |
|
| 2012 |
Wagner GP, Kin K, Lynch VJ. Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples. Theory in Biosciences = Theorie in Den Biowissenschaften. 131: 281-5. PMID 22872506 DOI: 10.1007/S12064-012-0162-3 |
0.498 |
|
| 2012 |
Emera D, Wagner GP. Transposable element recruitments in the mammalian placenta: impacts and mechanisms. Briefings in Functional Genomics. 11: 267-76. PMID 22753775 DOI: 10.1093/Bfgp/Els013 |
0.754 |
|
| 2012 |
Wagner GP, Tong Y, Emera D, Romero R. An evolutionary test of the isoform switching hypothesis of functional progesterone withdrawal for parturition: humans have a weaker repressive effect of PR-A than mice. Journal of Perinatal Medicine. 40: 345-51. PMID 22752763 DOI: 10.1515/Jpm-2011-0256 |
0.733 |
|
| 2012 |
Emera D, Wagner GP. Transformation of a transposon into a derived prolactin promoter with function during human pregnancy. Proceedings of the National Academy of Sciences of the United States of America. 109: 11246-51. PMID 22733751 DOI: 10.1073/Pnas.1118566109 |
0.764 |
|
| 2012 |
Brandley MC, Young RL, Warren DL, Thompson MB, Wagner GP. Uterine gene expression in the live-bearing lizard, Chalcides ocellatus, reveals convergence of squamate reptile and mammalian pregnancy mechanisms. Genome Biology and Evolution. 4: 394-411. PMID 22333490 DOI: 10.1093/Gbe/Evs013 |
0.517 |
|
| 2012 |
Hyberts SG, Milbradt AG, Wagner AB, Arthanari H, Wagner G. Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling. Journal of Biomolecular Nmr. 52: 315-27. PMID 22331404 DOI: 10.1007/s10858-012-9611-z |
0.311 |
|
| 2012 |
Padua MB, Lynch VJ, Alvarez NV, Garthwaite MA, Golos TG, Bazer FW, Kalkunte S, Sharma S, Wagner GP, Hansen PJ. ACP5 (Uteroferrin): phylogeny of an ancient and conserved gene expressed in the endometrium of mammals. Biology of Reproduction. 86: 123. PMID 22278982 DOI: 10.1095/Biolreprod.111.097964 |
0.578 |
|
| 2012 |
Emera D, Romero R, Wagner G. The evolution of menstruation: a new model for genetic assimilation: explaining molecular origins of maternal responses to fetal invasiveness. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 26-35. PMID 22057551 DOI: 10.1002/Bies.201100099 |
0.785 |
|
| 2012 |
Emera D, Casola C, Lynch VJ, Wildman DE, Agnew D, Wagner GP. Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Molecular Biology and Evolution. 29: 239-47. PMID 21813467 DOI: 10.1093/Molbev/Msr189 |
0.806 |
|
| 2012 |
Wagner GP, Lynch VJ, Nnamani M. Origin of the Endometrial Gene Regulatory Network of Placental Mammals. Biology of Reproduction. 87: 33-33. DOI: 10.1093/Biolreprod/87.S1.33 |
0.543 |
|
| 2011 |
Lynch VJ, May G, Wagner GP. Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB. Nature. 480: 383-6. PMID 22080951 DOI: 10.1038/Nature10595 |
0.56 |
|
| 2011 |
Lynch VJ, Leclerc RD, May G, Wagner GP. Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nature Genetics. 43: 1154-9. PMID 21946353 DOI: 10.1038/Ng.917 |
0.8 |
|
| 2011 |
Brayer KJ, Lynch VJ, Wagner GP. Evolution of a derived protein-protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation. Proceedings of the National Academy of Sciences of the United States of America. 108: E414-20. PMID 21788518 DOI: 10.1073/Pnas.1100990108 |
0.55 |
|
| 2011 |
Houle D, Pélabon C, Wagner GP, Hansen TF. Measurement and meaning in biology. The Quarterly Review of Biology. 86: 3-34. PMID 21495498 DOI: 10.1086/658408 |
0.468 |
|
| 2011 |
Lynch VJ, Wagner GP. Revisiting a classic example of transcription factor functional equivalence: are Eyeless and Pax6 functionally equivalent or divergent? Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 316: 93-8. PMID 20853421 DOI: 10.1002/Jez.B.21373 |
0.577 |
|
| 2010 |
Wagner GP, Lynch VJ. Evolutionary novelties. Current Biology : Cb. 20: R48-52. PMID 20129035 DOI: 10.1016/j.cub.2009.11.010 |
0.552 |
|
| 2010 |
Lynch VJ, Wagner GP. Did egg-laying boas break Dollo's law? Phylogenetic evidence for reversal to oviparity in sand boas (Eryx: Boidae). Evolution; International Journal of Organic Evolution. 64: 207-16. PMID 19659599 DOI: 10.1111/J.1558-5646.2009.00790.X |
0.526 |
|
| 2010 |
Kohlsdorf T, Lynch VJ, Rodrigues MT, Brandley MC, Wagner GP. Data and data interpretation in the study of limb evolution: A reply to Galis et al. On the reevolution of digits in the lizard genus bachia Evolution. 64: 2477-2485. DOI: 10.1111/J.1558-5646.2010.01042.X |
0.523 |
|
| 2009 |
Otto W, Stadler PF, López-Giraldéz F, Townsend JP, Lynch VJ, Wagner GP. Measuring transcription factor-binding site turnover: a maximum likelihood approach using phylogenies. Genome Biology and Evolution. 1: 85-98. PMID 20333180 DOI: 10.1093/Gbe/Evp010 |
0.633 |
|
| 2009 |
Lynch VJ, Brayer K, Gellersen B, Wagner GP. HoxA-11 and FOXO1A cooperate to regulate decidual prolactin expression: towards inferring the core transcriptional regulators of decidual genes. Plos One. 4: e6845. PMID 19727442 DOI: 10.1371/Journal.Pone.0006845 |
0.584 |
|
| 2009 |
Lynch VJ, Wagner GP. Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes. Plos Genetics. 5: e1000349. PMID 19165336 DOI: 10.1371/Journal.Pgen.1000349 |
0.558 |
|
| 2008 |
Kohlsdorf T, Cummings MP, Lynch VJ, Stopper GF, Takahashi K, Wagner GP. A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. Journal of Molecular Evolution. 67: 581-93. PMID 18855040 DOI: 10.1007/S00239-008-9156-7 |
0.78 |
|
| 2008 |
Lynch VJ, Tanzer A, Wang Y, Leung FC, Gellersen B, Emera D, Wagner GP. Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals. Proceedings of the National Academy of Sciences of the United States of America. 105: 14928-33. PMID 18809929 DOI: 10.1073/Pnas.0802355105 |
0.812 |
|
| 2008 |
Lynch VJ, Wagner GP. Resurrecting the role of transcription factor change in developmental evolution. Evolution; International Journal of Organic Evolution. 62: 2131-54. PMID 18564379 DOI: 10.1111/J.1558-5646.2008.00440.X |
0.576 |
|
| 2008 |
Wagner GP, Lynch VJ. The gene regulatory logic of transcription factor evolution. Trends in Ecology & Evolution. 23: 377-85. PMID 18501470 DOI: 10.1016/J.Tree.2008.03.006 |
0.561 |
|
| 2007 |
Wagner GP, Otto W, Lynch V, Stadler PF. A stochastic model for the evolution of transcription factor binding site abundance. Journal of Theoretical Biology. 247: 544-53. PMID 17475285 DOI: 10.1016/J.Jtbi.2007.03.001 |
0.591 |
|
| 2007 |
Stopper GF, Wagner GP. Inhibition of Sonic hedgehog signaling leads to posterior digit loss in Ambystoma mexicanum: parallels to natural digit reduction in urodeles. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 321-31. PMID 17117438 DOI: 10.1002/Dvdy.21025 |
0.776 |
|
| 2007 |
Conant GC, Wagner GP, Stadler PF. Modeling amino acid substitution patterns in orthologous and paralogous genes. Molecular Phylogenetics and Evolution. 42: 298-307. PMID 16942891 DOI: 10.1016/J.Ympev.2006.07.006 |
0.659 |
|
| 2006 |
Lynch VJ, Roth JJ, Wagner GP. Adaptive evolution of Hox-gene homeodomains after cluster duplications. Bmc Evolutionary Biology. 6: 86. PMID 17078881 DOI: 10.1186/1471-2148-6-86 |
0.581 |
|
| 2006 |
Hansen TF, Alvarez-Castro JM, Carter AJ, Hermisson J, Wagner GP. Evolution of genetic architecture under directional selection. Evolution; International Journal of Organic Evolution. 60: 1523-36. PMID 17017054 DOI: 10.1111/J.0014-3820.2006.Tb00498.X |
0.547 |
|
| 2006 |
Dunn CW, Wagner GP. The evolution of colony-level development in the Siphonophora (Cnidaria:Hydrozoa). Development Genes and Evolution. 216: 743-54. PMID 16983540 DOI: 10.1007/S00427-006-0101-8 |
0.541 |
|
| 2006 |
Crow KD, Stadler PF, Lynch VJ, Amemiya C, Wagner GP. The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts. Molecular Biology and Evolution. 23: 121-36. PMID 16162861 DOI: 10.1093/Molbev/Msj020 |
0.617 |
|
| 2005 |
Wagner GP, Lynch VJ. Molecular evolution of evolutionary novelties: the vagina and uterus of therian mammals. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 580-92. PMID 16252266 DOI: 10.1002/Jez.B.21074 |
0.607 |
|
| 2005 |
Stopper GF, Wagner GP. Of chicken wings and frog legs: a smorgasbord of evolutionary variation in mechanisms of tetrapod limb development. Developmental Biology. 288: 21-39. PMID 16246321 DOI: 10.1016/J.Ydbio.2005.09.010 |
0.788 |
|
| 2005 |
Laubichler MD, Müller GB, Fontana W, Wagner GP. Sacrificing dialogue for politics? Science (New York, N.Y.). 309: 1324. PMID 16123284 DOI: 10.1126/Science.309.5739.1324B |
0.549 |
|
| 2005 |
Wagner GP, Takahashi K, Lynch V, Prohaska SJ, Fried C, Stadler PF, Amemiya C. Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences. Journal of Molecular Evolution. 60: 665-76. PMID 15983874 DOI: 10.1007/S00239-004-0252-Z |
0.63 |
|
| 2005 |
SHPAK M, STADLER P, WAGNER G, HERMISSON J. Erratum to “Aggregation of variables and system decomposability: Applications to fitness landscape analysis”[Theory in Biosciences 123 (2004) 33–68] Theory in Biosciences. 124: 87-88. DOI: 10.1016/J.Thbio.2005.05.001 |
0.598 |
|
| 2004 |
Shpak M, Stadler P, Wagner GP, Altenberg L. Simon-Ando decomposability and fitness landscapes. Theory in Biosciences = Theorie in Den Biowissenschaften. 123: 139-80. PMID 18236097 DOI: 10.1016/J.Thbio.2004.04.001 |
0.633 |
|
| 2004 |
Shpak M, Stadler P, Wagner GP, Hermisson J. Aggregation of variables and system decomposition: Applications to fitness landscape analysis. Theory in Biosciences = Theorie in Den Biowissenschaften. 123: 33-68. PMID 18202879 DOI: 10.1016/J.Thbio.2004.02.001 |
0.625 |
|
| 2004 |
Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP. Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals. Proceedings. Biological Sciences / the Royal Society. 271: 2201-7. PMID 15539344 DOI: 10.1098/Rspb.2004.2848 |
0.799 |
|
| 2004 |
Campos PR, de Oliveira VM, Wagner GP, Stadler PF. Gene phylogenies and protein-protein interactions: possible artifacts resulting from shared protein interaction partners. Journal of Theoretical Biology. 231: 197-202. PMID 15380384 DOI: 10.1016/J.Jtbi.2004.06.014 |
0.405 |
|
| 2004 |
Stadler PF, Fried C, Prohaska SJ, Bailey WJ, Misof BY, Ruddle FH, Wagner GP. Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii. Molecular Phylogenetics and Evolution. 32: 686-94. PMID 15288047 DOI: 10.1016/J.Ympev.2004.03.015 |
0.407 |
|
| 2004 |
Wagner GP, Fried C, Prohaska SJ, Stadler PF. Divergence of conserved non-coding sequences: rate estimates and relative rate tests. Molecular Biology and Evolution. 21: 2116-21. PMID 15282332 DOI: 10.1093/Molbev/Msh221 |
0.405 |
|
| 2004 |
Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF. Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications. Molecular Phylogenetics and Evolution. 31: 581-604. PMID 15062796 DOI: 10.1016/J.Ympev.2003.08.009 |
0.641 |
|
| 2004 |
Prohaska SJ, Fried C, Amemiya CT, Ruddle FH, Wagner GP, Stadler PF. The shark HoxN cluster is homologous to the human HoxD cluster. Journal of Molecular Evolution. 58: 212-7. PMID 15042342 DOI: 10.1007/S00239-003-2545-Z |
0.308 |
|
| 2004 |
Wagner GP, Laubichler MD. Rupert Riedl and the re-synthesis of evolutionary and developmental biology: body plans and evolvability. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 302: 92-102. PMID 14760655 DOI: 10.1002/Jez.B.20005 |
0.574 |
|
| 2004 |
Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT. Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution. Genome Research. 14: 11-7. PMID 14707166 DOI: 10.1101/Gr.1712904 |
0.355 |
|
| 2003 |
de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, et al. Perspective: Evolution and detection of genetic robustness. Evolution; International Journal of Organic Evolution. 57: 1959-72. PMID 14575319 DOI: 10.1554/02-750R |
0.777 |
|
| 2003 |
Laubichler MD, Wagner GP. Editorial: A new series of vignettes on the history of evolutionary developmental biology. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 299: 1-2. PMID 14508810 DOI: 10.1002/Jez.B.34 |
0.533 |
|
| 2003 |
Bagheri-Chaichian H, Hermisson J, Vaisnys JR, Wagner GP. Effects of epistasis on phenotypic robustness in metabolic pathways. Mathematical Biosciences. 184: 27-51. PMID 12788232 DOI: 10.1016/S0025-5564(03)00057-9 |
0.763 |
|
| 2003 |
Wagner GP, Stadler PF. Quasi-independence, homology and the unity of type: a topological theory of characters. Journal of Theoretical Biology. 220: 505-27. PMID 12623283 DOI: 10.1006/Jtbi.2003.3150 |
0.367 |
|
| 2002 |
Carter AJ, Wagner GP. Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model. Proceedings. Biological Sciences / the Royal Society. 269: 953-60. PMID 12028779 DOI: 10.1098/Rspb.2002.1968 |
0.534 |
|
| 2002 |
Stadler BM, Stadler PF, Wagner GP, Fontana W. The topology of the possible: formal spaces underlying patterns of evolutionary change. Journal of Theoretical Biology. 213: 241-74. PMID 11894994 DOI: 10.1006/Jtbi.2001.2423 |
0.379 |
|
| 2001 |
Laubichler MD, Wagner GP. How Molecular is Molecular Developmental Biology? A Reply to Alex Rosenberg's Reductionism Redux: Computing the Embryo Biology and Philosophy. 16: 53-68. DOI: 10.1023/A:1006750126784 |
0.553 |
|
| 2000 |
Mezey JG, Cheverud JM, Wagner GP. Is the genotype-phenotype map modular? A statistical approach using mouse quantitative trait loci data. Genetics. 156: 305-11. PMID 10978294 |
0.536 |
|
| 2000 |
Shpak M, Wagner GP. Asymmetry of configuration space induced by unequal crossover: implications for a mathematical theory of evolutionary innovation. Artificial Life. 6: 25-43. PMID 10943664 |
0.559 |
|
| 2000 |
Stadler PF, Seitz R, Wagner GP. Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters. Bulletin of Mathematical Biology. 62: 399-428. PMID 10812714 DOI: 10.1006/Bulm.1999.0167 |
0.35 |
|
| 2000 |
Wagner GP, Mezey J. Modeling the evolution of genetic architecture: A continuum of alleles model with pairwise A x A epistasis Journal of Theoretical Biology. 203: 163-175. PMID 10704300 DOI: 10.1006/Jtbi.2000.1074 |
0.554 |
|
| 2000 |
Kim CB, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minoshima S, Shimizu N, Wagner G, Ruddle F. Hox cluster genomics in the horn shark, Heterodontus francisci. Proceedings of the National Academy of Sciences of the United States of America. 97: 1655-60. PMID 10677514 DOI: 10.1073/Pnas.030539697 |
0.578 |
|
| 2000 |
Wagner GP, Chiu C, Laubichler M. Developmental Evolution as a Mechanistic Science: The Inference from Developmental Mechanisms to Evolutionary Processes1 American Zoologist. 40: 819-831. DOI: 10.1668/0003-1569(2000)040[0819:DEAAMS]2.0.CO;2 |
0.554 |
|
| 2000 |
Wagner GP, Chiu C, Laubichler M. Developmental Evolution as a Mechanistic Science: The Inference from Developmental Mechanisms to Evolutionary Processes American Zoologist. 40: 819-831. DOI: 10.1093/Icb/40.5.819 |
0.588 |
|
| 2000 |
Laubichler MD, Wagner GP. Organism and Character Decomposition: Steps towards an Integrative Theory of Biology Philosophy of Science. 67: S289-S300. DOI: 10.1086/392826 |
0.505 |
|
| 2000 |
Wagner GP, Laubichler MD. Character identification in evolutionary biology: The role of the organism Theory in Biosciences. 119: 20-40. DOI: 10.1007/s12064-000-0003-7 |
0.534 |
|
| 1999 |
Stadler PF, Wagner GP. Algebraic theory of recombination spaces. Evolutionary Computation. 5: 241-75. PMID 10021760 DOI: 10.1162/Evco.1997.5.3.241 |
0.339 |
|
| 1998 |
Wagner GP, Laubichler MD, Bagheri-Chaichian H. Genetic measurement of theory of epistatic effects. Genetica. 102: 569-80. PMID 9766965 |
0.776 |
|
| 1997 |
Wagner GP, Booth G, Bagheri-Chaichian H. A POPULATION GENETIC THEORY OF CANALIZATION. Evolution; International Journal of Organic Evolution. 51: 329-347. PMID 28565347 DOI: 10.1111/J.1558-5646.1997.Tb02420.X |
0.779 |
|
| 1994 |
Wagner A, Wagner GP, Similion P. Epistasis can facilitate the evolution of reproductive isolation by peak shifts: a two-locus two-allele model. Genetics. 138: 533-45. PMID 7828834 |
0.386 |
|
| 1994 |
Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P, Wagner GP, Bartels J, Murtha M, Pendleton J. Surveys of Gene Families Using Polymerase Chain Reaction: PCR Selection and PCR Drift Systematic Biology. 43: 250-261. DOI: 10.1093/Sysbio/43.2.250 |
0.351 |
|
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