David C. Samuels - Publications

Affiliations: 
Molecular Physiology and Biophysics Vanderbilt University Medical School 

111/227 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Volpe KE, Samuels DC, Elson JL, Steyn JS, Gebretsadik T, Ellis RJ, Heaton RK, Kallianpur AR, Letendre S, Hulgan T. Mitochondrial DNA Mutation Pathogenicity Score and Neurocognitive Performance in Persons with HIV. Mitochondrion. PMID 37989461 DOI: 10.1016/j.mito.2023.11.003  0.302
2023 Wang M, Deng W, Samuels DC, Zhao Z, Simon LM. MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data. Genes. 14. PMID 37372402 DOI: 10.3390/genes14061222  0.349
2020 Samuels DC, Below JE, Ness S, Yu H, Leng S, Guo Y. Alternative Applications of Genotyping Array Data Using Multivariant Methods. Trends in Genetics : Tig. PMID 32773169 DOI: 10.1016/J.Tig.2020.07.006  0.331
2020 Sun J, Brown TT, Tong W, Samuels D, Tien P, Aissani B, Aouizerat B, Villacres M, Kuniholm MH, Gustafson D, Michel K, Cohen M, Schneider M, Adimora AA, Ali MK, et al. African Mitochondrial DNA Haplogroup L2 is Associated with Slower Decline of β-Cell Function and Lower Incidence of Diabetes Mellitus in non-Hispanic Black Women with HIV. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31927570 DOI: 10.1093/Cid/Ciaa026  0.368
2019 Erlandson KM, Bradford Y, Samuels DC, Brown T, Sun J, Wu K, Tassiopoulos K, Ritchie MD, Haas D, Hulgan T. Mitochondrial DNA Haplogroups and Frailty in Adults Living with HIV. Aids Research and Human Retroviruses. PMID 31822125 DOI: 10.1089/Aid.2019.0233  0.401
2019 Samuels DC, Hulgan T, Fessel JP, Billings FT, Thompson JL, Chandrasekhar R, Girard TD. Mitochondrial DNA Haplogroups and Delirium During Sepsis. Critical Care Medicine. 47: 1065-1071. PMID 31306254 DOI: 10.1097/Ccm.0000000000003810  0.455
2018 Hulgan T, Kallianpur AR, Guo Y, Barnholtz-Sloan JS, Gittleman H, Brown TT, Ellis R, Letendre S, Heaton RK, Samuels DC. Peripheral blood mitochondrial DNA copy number obtained from genome-wide genotype data is associated with neurocognitive impairment in persons with chronic HIV infection. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 30531306 DOI: 10.1097/Qai.0000000000001930  0.426
2018 Hulgan T, Ramsey BS, Koethe JR, Samuels DC, Gerschenson M, Libutti DE, Sax PE, Daar ES, Mccomsey GA, Brown TT. Relationships between Adipose Mitochondrial Function, Serum Adiponectin, and Insulin Resistance in Persons with HIV after 96 weeks of Antiretroviral Therapy. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 30531304 DOI: 10.1097/Qai.0000000000001926  0.412
2018 Smieszek S, Jia P, Samuels DC, Zhao Z, Barnholtz-Sloan J, Kaur H, Letendre S, Ellis R, Franklin DR, Hulgan T, Kallianpur A, Bush WS. Nuclear-Mitochondrial interactions influence susceptibility to HIV-associated neurocognitive impairment. Mitochondrion. PMID 30026132 DOI: 10.1016/J.Mito.2018.07.004  0.413
2018 Kallianpur AR, Gerschenson M, Hulgan T, Kaur H, Clifford D, Haas D, Murdock DG, McArthur JC, Samuels DC, Simpson D. Hemochromatosis (HFE) Gene Variants are Associated with Increased Mitochondrial DNA Levels during HIV-1 Infection and Antiretroviral Therapy. Aids Research and Human Retroviruses. PMID 29968489 DOI: 10.1089/Aid.2018.0025  0.418
2018 Otten ABC, Sallevelt SCEH, Carling PJ, Dreesen JCFM, Drüsedau M, Spierts S, Paulussen ADC, de Die-Smulders CEM, Herbert M, Chinnery PF, Samuels DC, Lindsey P, Smeets HJM. Mutation-specific effects in germline transmission of pathogenic mtDNA variants. Human Reproduction (Oxford, England). PMID 29850888 DOI: 10.1093/Humrep/Dey114  0.454
2018 Cavadas B, Pereira JB, Correia M, Fernandes V, Eloy C, Sobrinho-Simões M, Soares P, Samuels DC, Máximo V, Pereira L. Genomic and transcriptomic characterization of the mitochondrial-rich oncocytic phenotype on a thyroid carcinoma background. Mitochondrion. PMID 29631022 DOI: 10.1016/J.Mito.2018.04.001  0.43
2018 Sun J, Brown TT, Samuels DC, Hulgan T, D'Souza G, Jamieson BD, Erlandson KM, Martinson J, Palella FJ, Margolick JB, Kirk GD, Schrack JA. The Role of Mitochondrial DNA Variation in Age-Related Decline in Gait Speed Among Older Men Living with HIV. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 29481608 DOI: 10.1093/Cid/Ciy151  0.336
2017 Zhao S, Samuels DC, Zhao YY, Guo Y. Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome. Genomics. PMID 28970049 DOI: 10.1016/J.Ygeno.2017.09.013  0.413
2017 Zhang P, Lehmann BD, Samuels DC, Zhao S, Zhao YY, Shyr Y, Guo Y. Estimating relative mitochondrial DNA copy number using high throughput sequencing data. Genomics. PMID 28734953 DOI: 10.1016/J.Ygeno.2017.07.002  0.423
2016 Levinson RT, Hulgan T, Kalams SA, Fessel JP, Samuels DC. Mitochondrial Haplogroups as a Risk Factor for Herpes Zoster. Open Forum Infectious Diseases. 3: ofw184. PMID 27807590 DOI: 10.1093/Ofid/Ofw184  0.75
2016 Zhang P, Samuels DC, Zhao S, Wang J, Shyr Y, Guo Y. Practicability of Mitochondrial Heteroplasmy Detection through an Illumina Genotyping Array. Mitochondrion. PMID 27628068 DOI: 10.1016/J.Mito.2016.08.018  0.368
2016 Samuels DC, Wang J, Ye F, He J, Levinson RT, Sheng Q, Zhao S, Capra JA, Shyr Y, Zheng W, Guo Y. Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk. Genetics. PMID 27585849 DOI: 10.1534/Genetics.116.189936  0.703
2016 Gitschlag BL, Kirby CS, Samuels DC, Gangula RD, Mallal SA, Patel MR. Homeostatic Responses Regulate Selfish Mitochondrial Genome Dynamics in C. elegans. Cell Metabolism. 24: 91-103. PMID 27411011 DOI: 10.1016/J.Cmet.2016.06.008  0.444
2016 Zhang P, Samuels DC, Wang J, Zhao S, Shyr Y, Guo Y. Mitochondria single nucleotide variation across six blood cell types. Mitochondrion. PMID 26956645 DOI: 10.1016/J.Mito.2016.03.001  0.366
2016 Wilson IJ, Carling PJ, Alston CL, Floros VI, Pyle A, Hudson G, Sallevelt SC, Lamperti C, Carelli V, Bindoff LA, Samuels DC, Wonnapinij P, Zeviani M, Taylor RW, Smeets HJ, et al. Mitochondrial DNA Sequence Characteristics Modulate the Size of the Genetic Bottleneck. Human Molecular Genetics. PMID 26740552 DOI: 10.1093/Hmg/Ddv626  0.735
2015 Cavadas B, Soares P, Camacho R, Brandão A, Costa MD, Fernandes V, Pereira JB, Rito T, Samuels DC, Pereira L. Fine Time Scaling of Purifying Selection on Human Nonsynonymous mtDNA Mutations Based on the Worldwide Population Tree and Mother-Child Pairs. Human Mutation. 36: 1100-11. PMID 26252938 DOI: 10.1002/Humu.22849  0.345
2015 Zhang P, Samuels DC, Lehmann B, Stricker T, Pietenpol J, Shyr Y, Guo Y. Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data. Briefings in Bioinformatics. PMID 26249222 DOI: 10.1093/Bib/Bbv057  0.415
2015 Hulgan T, Samuels DC, Bush W, Ellis RJ, Letendre SL, Heaton RK, Franklin DR, Straub P, Murdock DG, Clifford DB, Collier AC, Gelman BB, Marra CM, McArthur JC, McCutchan JA, et al. Mitochondrial DNA Haplogroups and Neurocognitive Impairment during HIV Infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 26129753 DOI: 10.1093/Cid/Civ527  0.328
2015 Wang J, Raskin L, Samuels DC, Shyr Y, Guo Y. Genome measures used for quality control are dependent on gene function and ancestry. Bioinformatics (Oxford, England). 31: 318-23. PMID 25297068 DOI: 10.1093/Bioinformatics/Btu668  0.305
2015 Zhang P, Samuels DC, Lehmann B, Stricker T, Pietenpol J, Shyr Y, Guo Y. Practicality of identifying mitochondria variants from exome and RNAseq data Bmc Bioinformatics. 16: P6. DOI: 10.1186/1471-2105-16-S15-P6  0.339
2014 Pereira L, Soares P, Triska P, Rito T, van der Waerden A, Li B, Radivojac P, Samuels DC. Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential. Scientific Reports. 4: 7155. PMID 25412673 DOI: 10.1038/Srep07155  0.404
2014 Estopinal CB, Chocron IM, Parks MB, Wade EA, Roberson RM, Burgess LG, Brantley MA, Samuels DC. Mitochondrial haplogroups are associated with severity of diabetic retinopathy. Investigative Ophthalmology & Visual Science. 55: 5589-95. PMID 25118268 DOI: 10.1167/Iovs.14-15149  0.31
2014 Ye F, Samuels DC, Clark T, Guo Y. High-throughput sequencing in mitochondrial DNA research. Mitochondrion. 17: 157-63. PMID 24859348 DOI: 10.1016/J.Mito.2014.05.004  0.43
2014 Steffann J, Gigarel N, Samuels DC, Monnot S, Borghese R, Hesters L, Frydman N, Burlet P, Frydman R, Benachi A, Rotig A, Munnich A, Bonnefont JP. Data from artificial models of mitochondrial DNA disorders are not always applicable to humans. Cell Reports. 7: 933-4. PMID 24856293 DOI: 10.1016/J.Celrep.2014.05.005  0.462
2014 Hulgan T, Levinson RT, Gerschenson M, Phanuphak N, Ananworanich J, Teeratakulpisarm N, Jadwattanakul T, LiButti DE, Fink H, McArthur JC, Ebenezer GJ, Hauer P, Murdock D, Shikuma CM, Samuels DC, et al. Epidermal nerve fiber density, oxidative stress, and mitochondrial haplogroups in HIV-infected Thais initiating therapy. Aids (London, England). 28: 1625-33. PMID 24785954 DOI: 10.1097/Qad.0000000000000297  0.711
2014 Damas J, Samuels DC, Carneiro J, Amorim A, Pereira F. Mitochondrial DNA rearrangements in health and disease--a comprehensive study. Human Mutation. 35: 1-14. PMID 24115352 DOI: 10.1002/Humu.22452  0.435
2013 Samuels DC, Li C, Li B, Song Z, Torstenson E, Boyd Clay H, Rokas A, Thornton-Wells TA, Moore JH, Hughes TM, Hoffman RD, Haines JL, Murdock DG, Mortlock DP, Williams SM. Recurrent tissue-specific mtDNA mutations are common in humans. Plos Genetics. 9: e1003929. PMID 24244193 DOI: 10.1371/Journal.Pgen.1003929  0.709
2013 Soares P, Abrantes D, Rito T, Thomson N, Radivojac P, Li B, Macaulay V, Samuels DC, Pereira L. Evaluating purifying selection in the mitochondrial DNA of various mammalian species. Plos One. 8: e58993. PMID 23533597 DOI: 10.1371/Journal.Pone.0058993  0.405
2013 Guo Y, Li J, Li CI, Shyr Y, Samuels DC. MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis. Bioinformatics (Oxford, England). 29: 1210-1. PMID 23471301 DOI: 10.1093/Bioinformatics/Btt118  0.408
2013 Sinxadi PZ, Dave JA, Samuels DC, Heckmann JM, Maartens G, Levitt NS, Wester CW, Haas DW, Hulgan T. Mitochondrial genomics and antiretroviral therapy-associated metabolic complications in HIV-infected Black South Africans: a pilot study. Aids Research and Human Retroviruses. 29: 1031-9. PMID 23428049 DOI: 10.1089/Aid.2012.0373  0.311
2013 Monnot S, Samuels DC, Hesters L, Frydman N, Gigarel N, Burlet P, Kerbrat V, Lamazou F, Frydman R, Benachi A, Feingold J, Rotig A, Munnich A, Bonnefont JP, Steffann J. Mutation dependance of the mitochondrial DNA copy number in the first stages of human embryogenesis. Human Molecular Genetics. 22: 1867-72. PMID 23390135 DOI: 10.1093/Hmg/Ddt040  0.443
2013 Samuels DC, Wonnapinij P, Chinnery PF. Preventing the transmission of pathogenic mitochondrial DNA mutations: Can we achieve long-term benefits from germ-line gene transfer? Human Reproduction (Oxford, England). 28: 554-9. PMID 23297368 DOI: 10.1093/Humrep/Des439  0.772
2013 Payne BA, Wilson IJ, Yu-Wai-Man P, Coxhead J, Deehan D, Horvath R, Taylor RW, Samuels DC, Santibanez-Koref M, Chinnery PF. Universal heteroplasmy of human mitochondrial DNA. Human Molecular Genetics. 22: 384-90. PMID 23077218 DOI: 10.1093/Hmg/Dds435  0.485
2013 Hudson G, Panoutsopoulou K, Wilson I, Southam L, Rayner NW, Arden N, Birrell F, Carluke I, Carr A, Chapman K, Deloukas P, Doherty M, McCaskie A, Ollier WE, Ralston SH, ... ... Samuels DC, et al. No evidence of an association between mitochondrial DNA variants and osteoarthritis in 7393 cases and 5122 controls. Annals of the Rheumatic Diseases. 72: 136-9. PMID 22984172 DOI: 10.1136/Annrheumdis-2012-201932  0.447
2012 Raap AK, Jahangir Tafrechi RS, van de Rijke FM, Pyle A, Wählby C, Szuhai K, Ravelli RB, de Coo RF, Rajasimha HK, Nilsson M, Chinnery PF, Samuels DC, Janssen GM. Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells. Plos One. 7: e52080. PMID 23272214 DOI: 10.1371/Journal.Pone.0052080  0.778
2012 Neeve VC, Samuels DC, Bindoff LA, van den Bosch B, Van Goethem G, Smeets H, Lombès A, Jardel C, Hirano M, Dimauro S, De Vries M, Smeitink J, Smits BW, de Coo IF, Saft C, et al. What is influencing the phenotype of the common homozygous polymerase-γ mutation p.Ala467Thr? Brain : a Journal of Neurology. 135: 3614-26. PMID 23250882 DOI: 10.1093/Brain/Aws298  0.44
2012 Holzinger ER, Hulgan T, Ellis RJ, Samuels DC, Ritchie MD, Haas DW, Kallianpur AR, Bloss CS, Clifford DB, Collier AC, Gelman BB, Marra CM, McArthur JC, McCutchan JA, Morgello S, et al. Mitochondrial DNA variation and HIV-associated sensory neuropathy in CHARTER. Journal of Neurovirology. 18: 511-20. PMID 23073667 DOI: 10.1007/S13365-012-0133-Y  0.363
2012 Freyer C, Cree LM, Mourier A, Stewart JB, Koolmeister C, Milenkovic D, Wai T, Floros VI, Hagström E, Chatzidaki EE, Wiesner RJ, Samuels DC, Larsson NG, Chinnery PF. Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission. Nature Genetics. 44: 1282-5. PMID 23042113 DOI: 10.1038/Ng.2427  0.5
2012 Hulgan T, Robbins GK, Kalams SA, Samuels DC, Grady B, Shafer R, Murdock DG, Selph D, Haas DW, Pollard RB, de Gruttola V, Snyder S, Nevin T, Pettinelli C, Dube M, et al. T cell activation markers and African mitochondrial DNA Haplogroups among non-hispanic black participants in AIDS clinical trials group study 384 Plos One. 7. PMID 22970105 DOI: 10.1371/Journal.Pone.0043803  0.425
2012 Damas J, Carneiro J, Gonçalves J, Stewart JB, Samuels DC, Amorim A, Pereira F. Mitochondrial DNA deletions are associated with non-B DNA conformations. Nucleic Acids Research. 40: 7606-21. PMID 22661583 DOI: 10.1093/Nar/Gks500  0.469
2012 Hudson G, Wilson I, Payne BI, Elson J, Samuels DC, Santibanez-Korev M, Hall SJ, Chinnery PF. Unique mitochondrial DNA in highly inbred feral cattle. Mitochondrion. 12: 438-40. PMID 22609322 DOI: 10.1016/J.Mito.2012.05.003  0.449
2012 Pfeffer G, Blakely EL, Alston CL, Hassani A, Boggild M, Horvath R, Samuels DC, Taylor RW, Chinnery PF. Adult-onset spinocerebellar ataxia syndromes due to MTATP6 mutations. Journal of Neurology, Neurosurgery, and Psychiatry. 83: 883-6. PMID 22577227 DOI: 10.1136/Jnnp-2012-302568  0.33
2012 Guo Y, Cai Q, Samuels DC, Ye F, Long J, Li CI, Winther JF, Tawn EJ, Stovall M, Lähteenmäki P, Malila N, Levy S, Shaffer C, Shyr Y, Shu XO, et al. The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation. Mutation Research. 744: 154-60. PMID 22387842 DOI: 10.1016/J.Mrgentox.2012.02.006  0.418
2012 Gandhi VV, Samuels DC. Correlated tissue expression of genes of cytoplasmic and mitochondrial nucleotide metabolisms in normal tissues is disrupted in transformed tissues. Nucleosides, Nucleotides & Nucleic Acids. 31: 112-29. PMID 22303991 DOI: 10.1080/15257770.2011.644101  0.783
2012 Pereira L, Soares P, Máximo V, Samuels DC. Somatic mitochondrial DNA mutations in cancer escape purifying selection and high pathogenicity mutations lead to the oncocytic phenotype: pathogenicity analysis of reported somatic mtDNA mutations in tumors. Bmc Cancer. 12: 53. PMID 22299657 DOI: 10.1186/1471-2407-12-53  0.426
2012 Chinnery PF, Elliott HR, Hudson G, Samuels DC, Relton CL. Epigenetics, epidemiology and mitochondrial DNA diseases. International Journal of Epidemiology. 41: 177-87. PMID 22287136 DOI: 10.1093/Ije/Dyr232  0.449
2011 Song Z, Cao Y, Samuels DC. Replication pauses of the wild-type and mutant mitochondrial DNA polymerase gamma: a simulation study. Plos Computational Biology. 7: e1002287. PMID 22125488 DOI: 10.1371/Journal.Pcbi.1002287  0.712
2011 Gandhi VV, Samuels DC. Enzyme kinetics of the mitochondrial deoxyribonucleoside salvage pathway are not sufficient to support rapid mtDNA replication. Plos Computational Biology. 7: e1002078. PMID 21829339 DOI: 10.1371/Journal.Pcbi.1002078  0.802
2011 Grady BJ, Samuels DC, Robbins GK, Selph D, Canter JA, Pollard RB, Haas DW, Shafer R, Kalams SA, Murdock DG, Ritchie MD, Hulgan T. Mitochondrial genomics and CD4 T-cell count recovery after antiretroviral therapy initiation in AIDS clinical trials group study 384 Journal of Acquired Immune Deficiency Syndromes. 58: 363-370. PMID 21792066 DOI: 10.1097/Qai.0B013E31822C688B  0.42
2011 Gandhi VV, Samuels DC. A review comparing deoxyribonucleoside triphosphate (dNTP) concentrations in the mitochondrial and cytoplasmic compartments of normal and transformed cells. Nucleosides, Nucleotides & Nucleic Acids. 30: 317-39. PMID 21774628 DOI: 10.1080/15257770.2011.586955  0.802
2011 Payne BA, Wilson IJ, Hateley CA, Horvath R, Santibanez-Koref M, Samuels DC, Price DA, Chinnery PF. Mitochondrial aging is accelerated by anti-retroviral therapy through the clonal expansion of mtDNA mutations. Nature Genetics. 43: 806-10. PMID 21706004 DOI: 10.1038/Ng.863  0.446
2011 Gigarel N, Hesters L, Samuels DC, Monnot S, Burlet P, Kerbrat V, Lamazou F, Benachi A, Frydman R, Feingold J, Rotig A, Munnich A, Bonnefont JP, Frydman N, Steffann J. Poor correlations in the levels of pathogenic mitochondrial DNA mutations in polar bodies versus oocytes and blastomeres in humans. American Journal of Human Genetics. 88: 494-8. PMID 21473984 DOI: 10.1016/J.Ajhg.2011.03.010  0.391
2011 Pereira L, Soares P, Radivojac P, Li B, Samuels DC. Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity. American Journal of Human Genetics. 88: 433-9. PMID 21457906 DOI: 10.1016/J.Ajhg.2011.03.006  0.345
2011 Stewart JD, Schoeler S, Sitarz KS, Horvath R, Hallmann K, Pyle A, Yu-Wai-Man P, Taylor RW, Samuels DC, Kunz WS, Chinnery PF. POLG mutations cause decreased mitochondrial DNA repopulation rates following induced depletion in human fibroblasts. Biochimica Et Biophysica Acta. 1812: 321-5. PMID 21138766 DOI: 10.1016/J.Bbadis.2010.11.012  0.441
2011 Howells CC, Baumann WT, Samuels DC, Finkielstein CV. The Bcl-2-associated death promoter (BAD) lowers the threshold at which the Bcl-2-interacting domain death agonist (BID) triggers mitochondria disintegration. Journal of Theoretical Biology. 271: 114-23. PMID 21130780 DOI: 10.1016/J.Jtbi.2010.11.040  0.303
2011 Monnot S, Gigarel N, Samuels DC, Burlet P, Hesters L, Frydman N, Frydman R, Kerbrat V, Funalot B, Martinovic J, Benachi A, Feingold J, Munnich A, Bonnefont JP, Steffann J. Segregation of mtDNA throughout human embryofetal development: m.3243A>G as a model system. Human Mutation. 32: 116-25. PMID 21120938 DOI: 10.1002/Humu.21417  0.401
2010 Samuels DC, Wonnapinij P, Cree LM, Chinnery PF. Reassessing evidence for a postnatal mitochondrial genetic bottleneck. Nature Genetics. 42: 471-2; author reply . PMID 20502486 DOI: 10.1038/Ng0610-471  0.754
2010 Yu-Wai-Man P, Sitarz KS, Samuels DC, Griffiths PG, Reeve AK, Bindoff LA, Horvath R, Chinnery PF. OPA1 mutations cause cytochrome c oxidase deficiency due to loss of wild-type mtDNA molecules. Human Molecular Genetics. 19: 3043-52. PMID 20484224 DOI: 10.1093/Hmg/Ddq209  0.43
2010 Wonnapinij P, Chinnery PF, Samuels DC. Previous estimates of mitochondrial DNA mutation level variance did not account for sampling error: comparing the mtDNA genetic bottleneck in mice and humans. American Journal of Human Genetics. 86: 540-50. PMID 20362273 DOI: 10.1016/J.Ajhg.2010.02.023  0.735
2010 Song Z, Samuels DC. Analysis of enzyme kinetic data for mtDNA replication. Methods (San Diego, Calif.). 51: 385-91. PMID 20188839 DOI: 10.1016/J.Ymeth.2010.02.019  0.708
2010 Marchington D, Malik S, Banerjee A, Turner K, Samuels D, Macaulay V, Oakeshott P, Fratter C, Kennedy S, Poulton J. Information for genetic management of mtDNA disease: sampling pathogenic mtDNA mutants in the human germline and in placenta. Journal of Medical Genetics. 47: 257-61. PMID 19914907 DOI: 10.1136/Jmg.2009.072900  0.435
2010 Payne B, Hateley C, Samuels D, Wilson I, Santibanez-Koref M, Price D, Chinnery P. Mitochondrial ageing and antiretroviral therapy exposure Journal of the International Aids Society. 13: 1-1. DOI: 10.1186/1758-2652-13-S4-O28  0.374
2009 Samuels DC, Burn DJ, Chinnery PF. Detecting new neurodegenerative disease genes: does phenotype accuracy limit the horizon? Trends in Genetics : Tig. 25: 486-8. PMID 19819581 DOI: 10.1016/J.Tig.2009.09.008  0.304
2009 Pereira L, Freitas F, Fernandes V, Pereira JB, Costa MD, Costa S, Máximo V, Macaulay V, Rocha R, Samuels DC. The diversity present in 5140 human mitochondrial genomes. American Journal of Human Genetics. 84: 628-40. PMID 19426953 DOI: 10.1016/J.Ajhg.2009.04.013  0.44
2009 Cree LM, Samuels DC, Chinnery PF. The inheritance of pathogenic mitochondrial DNA mutations. Biochimica Et Biophysica Acta. 1792: 1097-102. PMID 19303927 DOI: 10.1016/J.Bbadis.2009.03.002  0.461
2009 Wendelsdorf KV, Song Z, Cao Y, Samuels DC. An analysis of enzyme kinetics data for mitochondrial DNA strand termination by nucleoside reverse transcription inhibitors. Plos Computational Biology. 5: e1000261. PMID 19132079 DOI: 10.1371/Journal.Pcbi.1000261  0.745
2009 Guan X, Silva P, Gyenai KB, Xu J, Geng T, Tu Z, Samuels DC, Smith EJ. The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo. Animal Genetics. 40: 134-41. PMID 19067672 DOI: 10.1111/J.1365-2052.2008.01810.X  0.335
2009 Pereira L, Samuels DC. Response to Yao et al American Journal of Human Genetics. 85: 933. DOI: 10.1016/J.Ajhg.2009.10.022  0.313
2008 Wonnapinij P, Chinnery PF, Samuels DC. The distribution of mitochondrial DNA heteroplasmy due to random genetic drift. American Journal of Human Genetics. 83: 582-93. PMID 18976726 DOI: 10.1016/J.Ajhg.2008.10.007  0.774
2008 Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A. Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region. Molecular Biology and Evolution. 25: 2759-70. PMID 18845547 DOI: 10.1093/Molbev/Msn225  0.4
2008 Elliott HR, Samuels DC, Eden JA, Relton CL, Chinnery PF. Pathogenic mitochondrial DNA mutations are common in the general population. American Journal of Human Genetics. 83: 254-60. PMID 18674747 DOI: 10.1016/J.Ajhg.2008.07.004  0.424
2008 Krishnan KJ, Reeve AK, Samuels DC, Chinnery PF, Blackwood JK, Taylor RW, Wanrooij S, Spelbrink JN, Lightowlers RN, Turnbull DM. What causes mitochondrial DNA deletions in human cells? Nature Genetics. 40: 275-9. PMID 18305478 DOI: 10.1038/Ng.F.94  0.483
2008 Kang J, Samuels DC. The evidence that the DNC (SLC25A19) is not the mitochondrial deoxyribonucleotide carrier. Mitochondrion. 8: 103-8. PMID 18280798 DOI: 10.1016/J.Mito.2008.01.001  0.461
2008 Rajasimha HK, Chinnery PF, Samuels DC. Selection against pathogenic mtDNA mutations in a stem cell population leads to the loss of the 3243A-->G mutation in blood. American Journal of Human Genetics. 82: 333-43. PMID 18252214 DOI: 10.1016/J.Ajhg.2007.10.007  0.778
2008 Cree LM, Samuels DC, de Sousa Lopes SC, Rajasimha HK, Wonnapinij P, Mann JR, Dahl HH, Chinnery PF. A reduction of mitochondrial DNA molecules during embryogenesis explains the rapid segregation of genotypes. Nature Genetics. 40: 249-54. PMID 18223651 DOI: 10.1038/Ng.2007.63  0.803
2007 Durham SE, Samuels DC, Cree LM, Chinnery PF. Normal levels of wild-type mitochondrial DNA maintain cytochrome c oxidase activity for two pathogenic mitochondrial DNA mutations but not for m.3243A-->G. American Journal of Human Genetics. 81: 189-95. PMID 17564976 DOI: 10.1086/518901  0.428
2007 Pyle A, Taylor RW, Durham SE, Deschauer M, Schaefer AM, Samuels DC, Chinnery PF. Depletion of mitochondrial DNA in leucocytes harbouring the 3243A->G mtDNA mutation. Journal of Medical Genetics. 44: 69-74. PMID 16950816 DOI: 10.1136/Jmg.2006.043109  0.445
2006 Samuels DC. Mitochondrial AZT metabolism. Iubmb Life. 58: 403-8. PMID 16801215 DOI: 10.1080/15216540600791571  0.425
2006 Durham SE, Samuels DC, Chinnery PF. Is selection required for the accumulation of somatic mitochondrial DNA mutations in post-mitotic cells? Neuromuscular Disorders : Nmd. 16: 381-6. PMID 16684599 DOI: 10.1016/J.Nmd.2006.03.012  0.472
2006 Samuels DC, Carothers AD, Horton R, Chinnery PF. The power to detect disease associations with mitochondrial DNA haplogroups. American Journal of Human Genetics. 78: 713-20. PMID 16532401 DOI: 10.1086/502682  0.411
2005 Bradshaw PC, Rathi A, Samuels DC. Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich. Bmc Genomics. 6: 136. PMID 16185363 DOI: 10.1186/1471-2164-6-136  0.712
2005 Durham SE, Bonilla E, Samuels DC, DiMauro S, Chinnery PF. Mitochondrial DNA copy number threshold in mtDNA depletion myopathy. Neurology. 65: 453-5. PMID 16087914 DOI: 10.1212/01.Wnl.0000171861.30277.88  0.421
2005 Bradshaw PC, Li J, Samuels DC. A computational model of mitochondrial AZT metabolism. The Biochemical Journal. 392: 363-73. PMID 16060859 DOI: 10.1042/Bj20050749  0.716
2005 Samuels DC. Life span is related to the free energy of mitochondrial DNA. Mechanisms of Ageing and Development. 126: 1123-9. PMID 15992863 DOI: 10.1016/J.Mad.2005.05.003  0.445
2005 Bradshaw PC, Samuels DC. A computational model of mitochondrial deoxynucleotide metabolism and DNA replication. American Journal of Physiology. Cell Physiology. 288: C989-1002. PMID 15634740 DOI: 10.1152/Ajpcell.00530.2004  0.719
2004 Samuels DC, Schon EA, Chinnery PF. Two direct repeats cause most human mtDNA deletions. Trends in Genetics : Tig. 20: 393-8. PMID 15313545 DOI: 10.1016/J.Tig.2004.07.003  0.472
2004 Samuels DC. Mitochondrial DNA repeats constrain the life span of mammals. Trends in Genetics : Tig. 20: 226-9. PMID 15109774 DOI: 10.1016/J.Tig.2004.03.003  0.413
2003 Taylor RW, Barron MJ, Borthwick GM, Gospel A, Chinnery PF, Samuels DC, Taylor GA, Plusa SM, Needham SJ, Greaves LC, Kirkwood TB, Turnbull DM. Mitochondrial DNA mutations in human colonic crypt stem cells. The Journal of Clinical Investigation. 112: 1351-60. PMID 14597761 DOI: 10.1172/Jci19435  0.466
2003 Samuels DC, Boys RJ, Henderson DA, Chinnery PF. A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate. Nucleic Acids Research. 31: 6043-52. PMID 14530452 DOI: 10.1093/Nar/Gkg784  0.395
2003 Capps GJ, Samuels DC, Chinnery PF. A model of the nuclear control of mitochondrial DNA replication. Journal of Theoretical Biology. 221: 565-83. PMID 12713941 DOI: 10.1006/Jtbi.2003.3207  0.471
2002 Barenghi CF, Hulton S, Samuels DC. Polarization of superfluid turbulence. Physical Review Letters. 89: 275301. PMID 12513214 DOI: 10.1103/Physrevlett.89.275301  0.728
2002 Chinnery PF, Samuels DC, Elson J, Turnbull DM. Accumulation of mitochondrial DNA mutations in ageing, cancer, and mitochondrial disease: is there a common mechanism? Lancet (London, England). 360: 1323-5. PMID 12414225 DOI: 10.1016/S0140-6736(02)11310-9  0.486
2002 Elson JL, Samuels DC, Johnson MA, Turnbull DM, Chinnery PF. The length of cytochrome c oxidase-negative segments in muscle fibres in patients with mtDNA myopathy. Neuromuscular Disorders : Nmd. 12: 858-64. PMID 12398838 DOI: 10.1016/S0960-8966(02)00047-0  0.338
2002 Barenghi CF, Samuels DC. Evaporation of a packet of quantized vorticity. Physical Review Letters. 89: 155302. PMID 12365997 DOI: 10.1103/Physrevlett.89.155302  0.721
2001 Elson JL, Samuels DC, Turnbull DM, Chinnery PF. Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age. American Journal of Human Genetics. 68: 802-6. PMID 11179029 DOI: 10.1086/318801  0.484
2000 Brown DT, Samuels DC, Michael EM, Turnbull DM, Chinnery PF. Random genetic drift determines the level of mutant mtDNA in human primary oocytes. American Journal of Human Genetics. 68: 533-6. PMID 11133360 DOI: 10.1086/318190  0.37
2000 Chinnery PF, Thorburn DR, Samuels DC, White SL, Dahl HM, Turnbull DM, Lightowlers RN, Howell N. The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both? Trends in Genetics : Tig. 16: 500-5. PMID 11074292 DOI: 10.1016/S0168-9525(00)02120-X  0.497
2000 Chinnery PF, Samuels DC. Relaxed replication of mtDNA: A model with implications for the expression of disease. American Journal of Human Genetics. 64: 1158-65. PMID 10090901 DOI: 10.1086/302311  0.423
1997 Barenghi CF, Samuels DC, Bauer GH, Donnelly RJ. Superfluid vortex lines in a model of turbulent flow Physics of Fluids. 9: 2631-2643. DOI: 10.1063/1.869379  0.499
1996 Barenghi CF, Bauer GH, Samuels DC, Donnelly RJ. A numerical investigation of vortex-coupled superfluidity Czechoslovak Journal of Physics. 46: 29-30. DOI: 10.1007/Bf02569430  0.492
1994 Bauer GH, Samuels DC, Donnelly RJ. Momentum statistics of interacting rotons Physica B: Physics of Condensed Matter. 194: 519-520. DOI: 10.1016/0921-4526(94)90589-4  0.473
1991 Samuels DC, Donnelly RJ. Motion of charged vortex rings in helium II. Physical Review Letters. 67: 2505-2508. PMID 10044443 DOI: 10.1103/Physrevlett.67.2505  0.47
1991 Wiener RJ, Hammer PW, Swanson CE, Samuels DC, Donnelly RJ. The effect of a coriolis force on Taylor-Couette flow Journal of Statistical Physics. 64: 913-926. DOI: 10.1007/Bf01048804  0.491
1990 Samuels DC, Donnelly RJ. Dynamics of the interactions of rotons with quantized vortices in helium II. Physical Review Letters. 65: 187-190. PMID 10042575 DOI: 10.1103/Physrevlett.65.187  0.483
1990 Samuels DC, Donnelly RJ. Sideband instability and recurrence of Kelvin waves on vortex cores. Physical Review Letters. 64: 1385-1388. PMID 10041382 DOI: 10.1103/Physrevlett.64.1385  0.464
Low-probability matches (unlikely to be authored by this person)
2006 Samuels DC. Computational Models of Mitochondrial DNA in Aging Handbook of Models For Human Aging. 591-599. DOI: 10.1016/B978-012369391-4/50049-7  0.295
2017 Guo Y, Zhao S, Sheng Q, Samuels DC, Shyr Y. The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data. Bmc Genomics. 18: 690. PMID 28984205 DOI: 10.1186/S12864-017-4022-X  0.295
2019 Ping J, Oyebamiji O, Yu H, Ness S, Chien J, Ye F, Kang H, Samuels D, Ivanov S, Chen D, Zhao YY, Guo Y. MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data. Briefings in Bioinformatics. PMID 31588509 DOI: 10.1093/Bib/Bbz084  0.291
2018 Guo M, Yue W, Samuels DC, Yu H, He J, Zhao YY, Guo Y. Quality and concordance of genotyping array data of 12,064 samples from 5840 cancer patients. Genomics. PMID 29902512 DOI: 10.1016/J.Ygeno.2018.06.001  0.29
2017 Bregman JA, Herren DJ, Estopinal CB, Chocron IM, Harlow PA, Warden C, Brantley MA, Samuels DC. Mitochondrial Haplogroups Affect Severity But Not Prevalence of Diabetic Retinopathy. Investigative Ophthalmology & Visual Science. 58: 1346-1351. PMID 28245487 DOI: 10.1167/Iovs.16-20616  0.288
2015 Wang J, Samuels DC, Shyr Y, Guo Y. Population structure analysis on 2504 individuals across 26 ancestries using bioinformatics approaches Bmc Bioinformatics. 16: P19. DOI: 10.1186/1471-2105-16-S15-P19  0.288
2020 Yu H, Zhao S, Ness S, Kang H, Sheng Q, Samuels DC, Oyebamiji O, Zhao YY, Guo Y. Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats. Plos Computational Biology. 16: e1007968. PMID 32511223 DOI: 10.1371/Journal.Pcbi.1007968  0.285
2018 Sheng Q, Samuels DC, Yu H, Ness S, Zhao YY, Guo Y. Cancer-specific expression quantitative loci are affected by expression dysregulation. Briefings in Bioinformatics. PMID 30475999 DOI: 10.1093/Bib/Bby108  0.284
2020 Erlandson KM, Wu K, Lake JE, Samuels DC, Bares SH, Tassiopoulos K, Koethe JR, Brown TT, Leonard M, Benson CA, Haas DW, Hulgan T. Mitochondrial DNA haplogroups and weight gain following switch to INSTI-Based ART. Aids (London, England). PMID 33252493 DOI: 10.1097/QAD.0000000000002771  0.275
2012 Guo Y, Li J, Li CI, Long J, Samuels DC, Shyr Y. The effect of strand bias in Illumina short-read sequencing data. Bmc Genomics. 13: 666. PMID 23176052 DOI: 10.1186/1471-2164-13-666  0.27
2020 Hulgan T, Samuels DC. Mitochondria and HIV: A troubled relationship enters its fourth decade. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32722791 DOI: 10.1093/Cid/Ciaa983  0.268
2015 Han L, Vickers KC, Samuels DC, Guo Y. Alternative applications for distinct RNA sequencing strategies. Briefings in Bioinformatics. 16: 629-39. PMID 25246237 DOI: 10.1093/Bib/Bbu032  0.267
2017 Guo Y, Dai Y, Yu H, Zhao S, Samuels DC, Shyr Y. Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis. Genomics. PMID 28131802 DOI: 10.1016/J.Ygeno.2017.01.005  0.265
2014 Eilertson B, Maruri F, Blackman A, Herrera M, Samuels DC, Sterling TR. High proportion of heteroresistance in gyrA and gyrB in fluoroquinolone-resistant Mycobacterium tuberculosis clinical isolates. Antimicrobial Agents and Chemotherapy. 58: 3270-5. PMID 24687490 DOI: 10.1128/Aac.02066-13  0.265
2017 Zhao S, Jing W, Samuels DC, Sheng Q, Shyr Y, Guo Y. Strategies for processing and quality control of Illumina genotyping arrays. Briefings in Bioinformatics. PMID 28334151 DOI: 10.1093/Bib/Bbx012  0.264
2017 Sierra B, Triska P, Soares P, Garcia G, Perez AB, Aguirre E, Oliveira M, Cavadas B, Regnault B, Alvarez M, Ruiz D, Samuels DC, Sakuntabhai A, Pereira L, Guzman MG. OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed CUBANS. Plos Pathogens. 13: e1006220. PMID 28241052 DOI: 10.1371/Journal.Ppat.1006220  0.264
1998 Samuels DC, Barenghi CF, Ricca RL. Journal of Low Temperature Physics. 110: 509-514. DOI: 10.1023/A:1022550631265  0.263
2012 Elson JL, Samuels DC. Common mtDNA polymorphisms and neurodegenerative disorders Mitochondrial Dysfunction in Neurodegenerative Disorders. 63-78. DOI: 10.1007/978-0-85729-701-3_4  0.263
2016 Samuels DC, Kallianpur AR, Ellis RJ, Bush WS, Letendre S, Franklin D, Grant I, Hulgan T. European Mitochondrial DNA Haplogroups are Associated with Cerebrospinal Fluid Biomarkers of Inflammation in HIV Infection. Pathogens & Immunity. 1: 330-351. PMID 28317034 DOI: 10.20411/pai.v1i2.156  0.262
2013 Samuels DC, Han L, Li J, Quanghu S, Clark TA, Shyr Y, Guo Y. Finding the lost treasures in exome sequencing data. Trends in Genetics : Tig. 29: 593-9. PMID 23972387 DOI: 10.1016/J.Tig.2013.07.006  0.262
2013 Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y. Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control. Biomed Research International. 2013: 915636. PMID 24303503 DOI: 10.1155/2013/915636  0.262
2017 Wang J, Samuels DC, Shyr Y, Guo Y. StrandScript: Evaluation of Illumina Genotyping Array Design and Strand Correction. Bioinformatics (Oxford, England). PMID 28402386 DOI: 10.1093/Bioinformatics/Btx186  0.262
2013 Guo Y, Samuels DC, Li J, Clark T, Li CI, Shyr Y. Evaluation of allele frequency estimation using pooled sequencing data simulation. Thescientificworldjournal. 2013: 895496. PMID 23476151 DOI: 10.1155/2013/895496  0.261
2014 Guo Y, Ye F, Sheng Q, Clark T, Samuels DC. Three-stage quality control strategies for DNA re-sequencing data. Briefings in Bioinformatics. 15: 879-89. PMID 24067931 DOI: 10.1093/Bib/Bbt069  0.259
2017 Mitchell SL, Neininger AC, Bruce CN, Chocron IM, Bregman JA, Estopinal CB, Muhammad A, Umfress AC, Jarrell KL, Warden C, Harlow PA, Wellons M, Samuels DC, Brantley MA. Mitochondrial Haplogroups Modify the Effect of Diabetes Duration and HbA1c on Proliferative Diabetic Retinopathy Risk in Patients With Type 2 Diabetes. Investigative Ophthalmology & Visual Science. 58: 6481-6488. PMID 29288266 DOI: 10.1167/Iovs.17-22804  0.257
2000 Barenghi CF, Kivotides D, Idowu OC, Samuels DC. Journal of Low Temperature Physics. 121: 377-386. DOI: 10.1023/A:1017541411509  0.257
2014 Guo Y, Zhao S, Sheng Q, Ye F, Li J, Lehmann B, Pietenpol J, Samuels DC, Shyr Y. Multi-perspective quality control of Illumina exome sequencing data using QC3. Genomics. 103: 323-8. PMID 24703969 DOI: 10.1016/J.Ygeno.2014.03.006  0.256
2018 Feng B, Hoskins W, Zhang Y, Meng Z, Samuels DC, Wang J, Xia R, Liu C, Tang J, Guo Y. Bi-stream CNN Down Syndrome screening model based on genotyping array. Bmc Medical Genomics. 11: 105. PMID 30453947 DOI: 10.1186/S12920-018-0416-0  0.255
2001 Kivotides D, Barenghi CF, Samuels DC. Fractal dimension of superfluid turbulence. Physical Review Letters. 87: 155301. PMID 11580706 DOI: 10.1103/Physrevlett.87.155301  0.255
2012 Wester CW, Eden SK, Shepherd BE, Bussmann H, Novitsky V, Samuels DC, Hendrickson SL, Winkler CA, O'Brien SJ, Essex M, D'Aquila RT, DeGruttola V, Marlink RG. Risk factors for symptomatic hyperlactatemia and lactic acidosis among combination antiretroviral therapy-treated adults in Botswana: results from a clinical trial. Aids Research and Human Retroviruses. 28: 759-65. PMID 22540188 DOI: 10.1089/Aid.2011.0303  0.255
2017 Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y. Corrigendum to "Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control". Biomed Research International. 2017: 7409598. PMID 28804721 DOI: 10.1155/2017/7409598  0.254
2014 Guo Y, He J, Zhao S, Wu H, Zhong X, Sheng Q, Samuels DC, Shyr Y, Long J. Illumina human exome genotyping array clustering and quality control. Nature Protocols. 9: 2643-62. PMID 25321409 DOI: 10.1038/Nprot.2014.174  0.253
2019 Chigaev M, Yu H, Samuels DC, Sheng Q, Oyebamiji O, Ness S, Yue W, Zhao YY, Guo Y. Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples. Frontiers in Genetics. 10: 211. PMID 30949194 DOI: 10.3389/Fgene.2019.00211  0.251
2017 Jia P, Zhao Z, Hulgan T, Bush WS, Samuels DC, Bloss CS, Heaton RK, Ellis RJ, Schork N, Marra CM, Collier AC, Clifford DB, Gelman BB, Sacktor N, Morgello S, et al. Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. PMID 28447399 DOI: 10.1002/Ajmg.B.32530  0.25
2000 Samuels DC. Superfluid turbulence at zero temperature Physica B-Condensed Matter. 284: 73-74. DOI: 10.1016/S0921-4526(99)02039-6  0.25
2000 Idowu OC, Kivotides D, Barenghi CF, Samuels DC. Journal of Low Temperature Physics. 120: 269-280. DOI: 10.1023/A:1004641912850  0.249
1998 Samuels D. A finite-length instability of vortex tubes European Journal of Mechanics - B/Fluids. 17: 587-594. DOI: 10.1016/S0997-7546(98)80013-7  0.248
2014 Kallianpur AR, Jia P, Ellis RJ, Zhao Z, Bloss C, Wen W, Marra CM, Hulgan T, Simpson DM, Morgello S, McArthur JC, Clifford DB, Collier AC, Gelman BB, McCutchan JA, ... ... Samuels DC, et al. Genetic variation in iron metabolism is associated with neuropathic pain and pain severity in HIV-infected patients on antiretroviral therapy. Plos One. 9: e103123. PMID 25144566 DOI: 10.1371/Journal.Pone.0103123  0.247
2000 Godfrey SP, Barenghi CF, Samuels DC. Stability of a laminar helium II flow under a non-uniform mutual friction forcing Physica B-Condensed Matter. 284: 65-66. DOI: 10.1016/S0921-4526(99)02030-X  0.246
2002 Kivotides D, Vassilicos CJ, Samuels DC, Barenghi CF. Velocity spectra of superfluid turbulence Europhysics Letters (Epl). 57: 845-851. DOI: 10.1209/Epl/I2002-00588-3  0.244
2017 Li CI, Samuels DC, Zhao YY, Shyr Y, Guo Y. Power and sample size calculations for high-throughput sequencing-based experiments. Briefings in Bioinformatics. PMID 28605403 DOI: 10.1093/Bib/Bbx061  0.244
1992 Samuels DC. Velocity matching and Poiseuille pipe flow of superfluid helium Physical Review B. 46: 11714-11724. DOI: 10.1103/Physrevb.46.11714  0.243
2002 Barenghi CF, Samuels DC, Kivotides D. Journal of Low Temperature Physics. 126: 271-279. DOI: 10.1023/A:1013728614751  0.243
2001 Godfrey SP, Samuels DC, Barenghi CF. Linear stability of laminar plane Poiseuille flow of helium II under a nonuniform mutual friction forcing Physics of Fluids. 13: 983-990. DOI: 10.1063/1.1352628  0.241
2013 Pu Y, Lee S, Samuels DC, Watson LT, Cao Y. The effect of unhealthy β-cells on insulin secretion in pancreatic islets. Bmc Medical Genomics. 6: S6. PMID 24565418 DOI: 10.1186/1755-8794-6-S3-S6  0.239
1999 Samuels DC, Kivotides D. A Damping Length Scale for Superfluid Turbulence Physical Review Letters. 83: 5306-5309. DOI: 10.1103/Physrevlett.83.5306  0.239
2000 Kivotides D, Samuels DC. Damping mechanism and length scale for superfluid turbulence Physica B: Condensed Matter. 284. DOI: 10.1016/S0921-4526(99)02038-4  0.238
1993 Samuels DC. Response of superfluid vortex filaments to concentrated normal-fluid vorticity Physical Review B. 47: 1107-1110. DOI: 10.1103/Physrevb.47.1107  0.237
2013 Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. Plos One. 8: e71462. PMID 23977046 DOI: 10.1371/Journal.Pone.0071462  0.237
2000 Godfrey SP, Samuels DC. Stable superfluid vortex filament structures in laminar boundary layer flow of helium II Physical Review B. 61: 4190-4195. DOI: 10.1103/Physrevb.61.4190  0.237
2000 Idowu OC, Samuels DC, Henderson KL. Evolution of coupled Gaussian vortex systems in helium II Physica B-Condensed Matter. 284: 69-70. DOI: 10.1016/S0921-4526(99)02036-0  0.237
2020 Chigaev M, Yu H, Samuels DC, Sheng Q, Oyebamiji O, Ness S, Yue W, Zhao YY, Guo Y. Corrigendum: Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples. Frontiers in Genetics. 11: 162. PMID 32161619 DOI: 10.3389/Fgene.2020.00162  0.236
2018 Guo Y, Yu H, Samuels DC, Yue W, Ness S, Zhao YY. Single-nucleotide variants in human RNA: RNA editing and beyond. Briefings in Functional Genomics. PMID 30312373 DOI: 10.1093/Bfgp/Ely032  0.235
2001 Barenghi CF, Ricca RL, Samuels DC. How tangled is a tangle? Physica D: Nonlinear Phenomena. 157: 197-206. DOI: 10.1016/S0167-2789(01)00304-9  0.235
2018 Kallianpur AR, Gittleman H, Letendre S, Ellis R, Barnholtz-Sloan JS, Bush WS, Heaton R, Samuels DC, Franklin DR, Rosario-Cookson D, Clifford DB, Collier AC, Gelman B, Marra CM, McArthur JC, et al. Cerebrospinal Fluid Ceruloplasmin, Haptoglobin, and Vascular Endothelial Growth Factor Are Associated with Neurocognitive Impairment in Adults with HIV Infection. Molecular Neurobiology. PMID 30209774 DOI: 10.1007/S12035-018-1329-9  0.234
2001 Godfrey SP, Samuels DC. Journal of Low Temperature Physics. 125: 69-85. DOI: 10.1023/A:1012261601650  0.233
2009 Cao Y, Samuels DC. Discrete stochastic simulation methods for chemically reacting systems. Methods in Enzymology. 454: 115-40. PMID 19216925 DOI: 10.1016/S0076-6879(08)03805-6  0.228
2018 Guo Y, Yu H, Samuels DC, Yue W, Ness S, Zhao YY. Corrigendum to: Single-nucleotide variants in human RNA: RNA editing and beyond. Briefings in Functional Genomics. PMID 30596888 DOI: 10.1093/Bfgp/Ely041  0.226
1999 RICCA RL, SAMUELS DC, BARENGHI CF. Evolution of vortex knots Journal of Fluid Mechanics. 391: 29-44. DOI: 10.1017/S0022112099005224  0.225
2001 Leadbeater M, Winiecki T, Samuels DC, Barenghi CF, Adams CS. Sound emission due to superfluid vortex reconnections. Physical Review Letters. 86: 1410-3. PMID 11290155 DOI: 10.1103/Physrevlett.86.1410  0.224
2000 Idowu OC, Willis A, Barenghi CF, Samuels DC. Local normal-fluid helium II flow due to mutual friction interaction with the superfluid Physical Review B. 62: 3409-3415. DOI: 10.1103/Physrevb.62.3409  0.224
2017 Patton SM, Wang Q, Hulgan T, Connor JR, Jia P, Zhao Z, Letendre SL, Ellis RJ, Bush WS, Samuels DC, Franklin DR, Kaur H, Iudicello J, Grant I, Kallianpur AR. Cerebrospinal fluid (CSF) biomarkers of iron status are associated with CSF viral load, antiretroviral therapy, and demographic factors in HIV-infected adults. Fluids and Barriers of the Cns. 14: 11. PMID 28427421 DOI: 10.1186/S12987-017-0058-1  0.222
1997 Miller KE, Samuels DC. The axon as a metabolic compartment: protein degradation, transport, and maximum length of an axon. Journal of Theoretical Biology. 186: 373-9. PMID 9219672 DOI: 10.1006/Jtbi.1996.0355  0.222
2000 Kivotides D, Barenghi CF, Samuels DC. Triple vortex ring structure in superfluid helium II. Science (New York, N.Y.). 290: 777-9. PMID 11052935 DOI: 10.1126/Science.290.5492.777  0.221
2001 Kivotides D, Barenghi CF, Samuels DC. Superfluid vortex reconnections at finite temperature Europhysics Letters (Epl). 54: 774-778. DOI: 10.1209/Epl/I2001-00321-X  0.22
2001 Kivotides D, Vassilicos JC, Samuels DC, Barenghi CF. Kelvin waves cascade in superfluid turbulence. Physical Review Letters. 86: 3080-3. PMID 11290112 DOI: 10.1103/Physrevlett.86.3080  0.219
2003 Leadbeater M, Samuels DC, Barenghi CF, Adams CS. Decay of superfluid turbulence via Kelvin-wave radiation Physical Review A. 67. DOI: 10.1103/Physreva.67.015601  0.219
2017 Wang J, Samuels DC, Zhao S, Xiang Y, Zhao YY, Guo Y. Current Research on Non-Coding Ribonucleic Acid (RNA). Genes. 8. PMID 29206165 DOI: 10.3390/Genes8120366  0.219
2004 Barenghi CF, Samuels DC. Scaling laws of vortex reconnections Journal of Low Temperature Physics. 136: 281-293. DOI: 10.1023/B:Jolt.0000041267.08268.7A  0.218
2021 Volpe K, Samuels D, Kallianpur A, Ellis R, Franklin D, Letendre S, Heaton RK, Hulgan T. Mitochondrial DNA haplogroups and domain-specific neurocognitive performance in adults with HIV. Journal of Neurovirology. PMID 34101088 DOI: 10.1007/s13365-021-00989-7  0.214
2016 Sheng Q, Vickers K, Zhao S, Wang J, Samuels DC, Koues O, Shyr Y, Guo Y. Multi-perspective quality control of Illumina RNA sequencing data analysis. Briefings in Functional Genomics. PMID 27687708 DOI: 10.1093/Bfgp/Elw035  0.212
2001 Kivotides D, Vassilicos JC, Barenghi CF, Khan MA, Samuels DC. Quantum signature of superfluid turbulence. Physical Review Letters. 87: 275302. PMID 11800889 DOI: 10.1103/Physrevlett.87.275302  0.209
2000 Idowu OC, Henderson KL, Samuels DC. Formation and decay of vorticity in coupled helium-II flow Physical Review B. 63. DOI: 10.1103/Physrevb.63.024513  0.209
2019 Chen DQ, Cao G, Chen H, Argyopoulos CP, Yu H, Su W, Chen L, Samuels DC, Zhuang S, Bayliss GP, Zhao S, Yu XY, Vaziri ND, Wang M, Liu D, et al. Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan. Nature Communications. 10: 1476. PMID 30931940 DOI: 10.1038/S41467-019-09329-0  0.209
2015 Guo Y, Zhao S, Sheng Q, Guo M, Lehmann B, Pietenpol J, Samuels DC, Shyr Y. RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library. Biomed Research International. 2015: 862130. PMID 26543871 DOI: 10.1155/2015/862130  0.206
1996 Samuels DC, Hentschel HG, Fine A. The origin of neuronal polarization: a model of axon formation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 351: 1147-56. PMID 8899865 DOI: 10.1098/Rstb.1996.0099  0.206
2015 Pu Y, Samuels DC, Watson LT, Cao Y. Randomness in the hybrid modeling and simulation of insulin secretion pathways in pancreatic islets Tsinghua Science and Technology. 20: 441-452. DOI: 10.1109/Tst.2015.7297743  0.205
1998 Hentschel HGE, Samuels D, Fine A. Instabilities during the dendritic and axonal development of neuronal form Physica a: Statistical Mechanics and Its Applications. 254: 46-61. DOI: 10.1016/S0378-4371(98)00011-9  0.2
2019 Yu H, Samuels DC, Zhao YY, Guo Y. Architectures and accuracy of artificial neural network for disease classification from omics data. Bmc Genomics. 20: 167. PMID 30832569 DOI: 10.1186/S12864-019-5546-Z  0.195
1999 Barenghi CF, Samuels DC. Self-consistent decay of superfluid turbulence Physical Review B. 60: 1252-1260. DOI: 10.1103/Physrevb.60.1252  0.194
2018 Chalazan B, Dickerman D, Sridhar A, Farrell M, Gayle K, Samuels DC, Shoemaker B, Darbar D. Relation of Body Mass Index to Symptom Burden in Patients withAtrial Fibrillation. The American Journal of Cardiology. PMID 29914646 DOI: 10.1016/J.Amjcard.2018.04.011  0.191
2013 Hart AB, Samuels DC, Hulgan T. The other genome: a systematic review of studies of mitochondrial DNA haplogroups and outcomes of HIV infection and antiretroviral therapy. Aids Reviews. 15: 213-20. PMID 24322381  0.191
1998 Samuels DC, Barenghi CF. Vortex Heating in Superfluid Helium at Low Temperatures Physical Review Letters. 81: 4381-4383. DOI: 10.1103/Physrevlett.81.4381  0.183
2022 Stefanski KM, Li GC, Marinko JT, Carter BD, Samuels DC, Sanders CR. How T118M peripheral myelin protein 22 predisposes humans to Charcot-Marie-Tooth disease. The Journal of Biological Chemistry. 102839. PMID 36581210 DOI: 10.1016/j.jbc.2022.102839  0.182
1996 Samuels DC, Hentschel HGE, Fine A. Parallel simulations of neuron growth Computers in Physics. 10: 129-134. DOI: 10.1063/1.168564  0.181
2010 Samuels DC, Chinnery PF. Reply to Lee and Sawcer Trends in Genetics. 26: 242-243. DOI: 10.1016/J.Tig.2010.03.001  0.175
2023 Lancaster MC, Chen HH, Shoemaker MB, Fleming MR, Baker JT, Evans G, Polikowsky HG, Samuels DC, Huff CD, Roden DM, Below JE. Detection of distant relatedness in biobanks for identification of undiagnosed carriers of a Mendelian disease variant: application to Long QT Syndrome. Research Square. PMID 37790303 DOI: 10.21203/rs.3.rs-3314860/v1  0.147
2022 Sanders AL, Hermanson JN, Samuels DC, Plate L, Sanders CR. Compendium of proteins containing segments that exhibit zero-tolerance to amino acid variation in humans. Protein Science : a Publication of the Protein Society. 31: e4408. PMID 36040257 DOI: 10.1002/pro.4408  0.132
2022 Samuels DC, Yu H, Guo Y. Is it time to reassess variant annotation? Trends in Genetics : Tig. PMID 35232614 DOI: 10.1016/j.tig.2022.02.002  0.128
2020 Ellis RJ, Moore DJ, Sundermann EE, Heaton RK, Mehta S, Hulgan T, Samuels D, Fields JA, Letendre SL. Nucleic acid oxidation is associated with biomarkers of neurodegeneration in CSF in people with HIV. Neurology(R) Neuroimmunology & Neuroinflammation. 7. PMID 33055205 DOI: 10.1212/NXI.0000000000000902  0.117
2020 Jiang L, Guo F, Tang J, Leng S, Ness S, Ye F, Kang H, Samuels DC, Guo Y. Global Autozygosity Is Associated with Cancer Risk, Mutational Signature and Prognosis. Cancers. 12. PMID 33291726 DOI: 10.3390/cancers12123646  0.117
2023 Lancaster MC, Chen HH, Shoemaker MB, Fleming MR, Baker JT, Polikowsky HG, Samuels DC, Huff CD, Roden DM, Below JE. Detection of distant familial relatedness in biobanks for identification of undiagnosed carriers of a Mendelian disease variant: application to Long QT syndrome. Medrxiv : the Preprint Server For Health Sciences. PMID 37163006 DOI: 10.1101/2023.04.19.23288831  0.111
2021 Martucci VL, Richmond B, Davis LK, Blackwell TS, Cox NJ, Samuels D, Edwards DV, Aldrich MC. Fate or coincidence: Do COPD and major depression share genetic risk factors? Human Molecular Genetics. PMID 33704461 DOI: 10.1093/hmg/ddab068  0.11
2021 Wang J, Ness S, Brown R, Yu H, Oyebamiji O, Jiang L, Sheng Q, Samuels DC, Zhao YY, Tang J, Guo Y. EditPredict: Prediction of RNA editable sites with convolutional neural network. Genomics. PMID 34562567 DOI: 10.1016/j.ygeno.2021.09.016  0.098
2021 Kaur H, Bush WS, Letendre SL, Ellis RJ, Heaton RK, Patton SM, Connor JR, Samuels DC, Franklin DR, Hulgan T, Kallianpur AR. Higher CSF Ferritin Heavy-Chain (Fth1) and Transferrin Predict Better Neurocognitive Performance in People with HIV. Molecular Neurobiology. PMID 34195939 DOI: 10.1007/s12035-021-02433-7  0.09
2023 Wu K, Koethe J, Hulgan T, Brown T, Bares SH, Tassiopoulos K, Lake JE, Leonard M, Samuels DC, Erlandson K, Haas DW. Pharmacogenetics of weight gain following switch from efavirenz- to integrase inhibitor-containing regimens. Pharmacogenetics and Genomics. PMID 37910437 DOI: 10.1097/FPC.0000000000000515  0.074
2016 Wiley LK, Vanhouten JP, Samuels DC, Aldrich MC, Roden DM, Peterson JF, Denny JC. STRATEGIES FOR EQUITABLE PHARMACOGENOMIC-GUIDED WARFARIN DOSING AMONG EUROPEAN AND AFRICAN AMERICAN INDIVIDUALS IN A CLINICAL POPULATION. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 545-556. PMID 27897005  0.072
2007 Samuels DC. Computational models of antiviral toxicity. Current Opinion in Drug Discovery & Development. 10: 43-8. PMID 17265740  0.063
2001 Leadbeater M, Winiecki T, Samuels DC, Barenghi CF, Adams CS. Sound emission due to superfluid vortex reconnections Physical Review Letters. 86: 1410-1413. DOI: 10.1103/PhysRevLett.86.1410  0.062
2023 Schirle L, Samuels DC, Faucon A, Cox NJ, Bruehl S. Polygenic Contributions to Chronic Overlapping Pain Conditions in a Large Electronic Health Record Sample. The Journal of Pain. PMID 36736868 DOI: 10.1016/j.jpain.2023.01.018  0.059
2003 Edwards JJ, Samuels D, Fu ES. Forearm compartment syndrome from intravenous mannitol extravasation during general anesthesia. Anesthesia and Analgesia. 96: 245-6, table of cont. PMID 12505960 DOI: 10.1097/00000539-200301000-00049  0.052
2021 He X, Howard BA, Liu Y, Neumann AK, Li L, Menon N, Roach T, Kale SD, Samuels DC, Li H, Kite T, Kita H, Hu TY, Luo M, Jones CN, et al. LYSMD3: A mammalian pattern recognition receptor for chitin. Cell Reports. 36: 109392. PMID 34289364 DOI: 10.1016/j.celrep.2021.109392  0.048
2021 Schirle L, Jeffery A, Yaqoob A, Sanchez-Roige S, Samuels DC. Two data-driven approaches to identifying the spectrum of problematic opioid use: A pilot study within a chronic pain cohort. International Journal of Medical Informatics. 156: 104621. PMID 34673309 DOI: 10.1016/j.ijmedinf.2021.104621  0.047
2019 Enten G, Shenouda MA, Samuels D, Fowler N, Balouch M, Camporesi E. A Retrospective Analysis of the Safety and Efficacy of Opioid-free Anesthesia versus Opioid Anesthesia for General Cesarean Section. Cureus. 11: e5725. PMID 31720193 DOI: 10.7759/Cureus.5725  0.045
2023 Chatham AH, Bradley ED, Schirle L, Sanchez-Roige S, Samuels DC, Jeffery AD. Detecting Problematic Opioid Use in the Electronic Health Record: Automation of the Addiction Behaviors Checklist in a Chronic Pain Population. Medrxiv : the Preprint Server For Health Sciences. PMID 37398208 DOI: 10.1101/2023.06.08.23290894  0.038
2021 Winters ND, Bedse G, Astafyev AA, Patrick TA, Altemus M, Morgan AJ, Mukerjee S, Johnson KD, Mahajan VR, Uddin MJ, Kingsley PJ, Centanni SW, Siciliano CA, Samuels DC, Marnett LJ, et al. Targeting diacylglycerol lipase reduces alcohol consumption in preclinical models. The Journal of Clinical Investigation. PMID 34292886 DOI: 10.1172/JCI146861  0.036
2007 Tanaka T, Takahashi K, Sako K, Kasegawa R, Toishi M, Watanabe K, Samuels D, Takeya M. Littrow-type external-cavity blue laser for holographic data storage. Applied Optics. 46: 3583-92. PMID 17514319  0.033
2023 Schirle L, Kwun S, Suh A, Sanchez-Roige S, Jeffery AD, Samuels DC. Identifying problematic opioid use in electronic health record data: Are we looking in the right place? Journal of Opioid Management. 19: 5-9. PMID 36683296 DOI: 10.5055/jom.2023.0754  0.031
2021 Peters KS, Rivera E, Warden C, Harlow PA, Mitchell SL, Calcutt MW, Samuels DC, Brantley MA. Plasma Arginine and Citrulline are Elevated in Diabetic Retinopathy. American Journal of Ophthalmology. PMID 34587493 DOI: 10.1016/j.ajo.2021.09.021  0.028
1998 Hentschel H, Samuels D, Fine A. Instabilities during the dendritic and axonal development of neuronal form Physica a: Statistical Mechanics and Its Applications. 254: 46-61. DOI: 10.1016/S0378-4371(98)00011-9  0.028
2023 Stefanski KM, Li GC, Marinko JT, Carter BD, Samuels DC, Sanders CR. Reply to Record et al. "The role of PMP22 T118M in Charcot-Marie-Tooth disease remains unsolved". The Journal of Biological Chemistry. 299: 105181. PMID 37716137 DOI: 10.1016/j.jbc.2023.105181  0.025
2020 Jenniskens P, Moskovitz N, Garvie LAJ, Yin Q, Howell JA, Free DL, Albers J, Samuels D, Fries MD, Mane P, Dunlap DR, Ziegler K, Sanborn ME, Zhou Q, Li Q, et al. Orbit and origin of the LL 7 chondrite Dishchii'bikoh (Arizona) Meteoritics & Planetary Science. 55: 535-557. DOI: 10.1111/Maps.13452  0.024
2006 Kori I, Bar-Zohar D, Carmiel-Haggai M, Samuels D, Nakache R, Oren R, Kessler A, Szold O, Ben-Haim M. Budd-Chiari syndrome and acute portal vein thrombosis: management by a transjugular intrahepatic portosystemic shunt (TIPS) and portal vein interventions via a TIPS. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. 10: 417-21. PMID 16504889 DOI: 10.1016/j.gassur.2005.07.019  0.022
2022 Bianchi SB, Jeffery AD, Samuels DC, Schirle L, Palmer AA, Sanchez-Roige S. Accelerating Opioid Use Disorders Research by Integrating Multiple Data Modalities. Complex Psychiatry. 8: 1-8. PMID 36545043 DOI: 10.1159/000525079  0.021
2009 Zmora O, Kori Y, Samuels D, Kessler A, Schulman CI, Klausner JM, Soffer D. Proximal Splenic Artery Embolization In Blunt Splenic Trauma. European Journal of Trauma and Emergency Surgery : Official Publication of the European Trauma Society. 35: 108. PMID 26814762 DOI: 10.1007/s00068-008-8030-z  0.02
2005 Rabinovich Y, Samuels D, Zelmanovich L, Khafif A, Reider E, Wolf YG. Survival with intact cerebral function after gunshot injury to both internal carotid arteries. Journal of Vascular Surgery. 42: 567-9. PMID 16171609 DOI: 10.1016/j.jvs.2005.05.010  0.015
Hide low-probability matches.