| Year |
Citation |
Score |
| 2022 |
Khatiwada B, Nguyen TT, Purslow JA, Venditti V. Solution structure ensemble of human obesity-associated protein FTO reveals druggable surface pockets at the interface between the N- and C-terminal domain. The Journal of Biological Chemistry. 298: 101907. PMID 35398093 DOI: 10.1016/j.jbc.2022.101907 |
0.3 |
|
| 2020 |
Ryan VH, Watters S, Amaya J, Khatiwada B, Venditti V, Naik MT, Fawzi NL. Weak binding to the A2RE RNA rigidifies hnRNPA2 RRMs and reduces liquid-liquid phase separation and aggregation. Nucleic Acids Research. PMID 32870271 DOI: 10.1093/Nar/Gkaa710 |
0.5 |
|
| 2020 |
Dotas RR, Nguyen TT, Stewart CE, Ghirlando R, Potoyan DA, Venditti V. Hybrid thermophilic/mesophilic enzymes reveal a role for conformational disorder in regulation of bacterial Enzyme I. Journal of Molecular Biology. PMID 32504625 DOI: 10.1016/J.Jmb.2020.05.024 |
0.321 |
|
| 2020 |
Purslow JA, Khatiwada B, Bayro MJ, Venditti V. NMR Methods for Structural Characterization of Protein-Protein Complexes. Frontiers in Molecular Biosciences. 7: 9. PMID 32047754 DOI: 10.3389/Fmolb.2020.00009 |
0.378 |
|
| 2019 |
Khatiwada B, Purslow JA, Underbakke ES, Venditti V. N-terminal fusion of the N-terminal domain of bacterial enzyme I facilitates recombinant expression and purification of the human RNA demethylases FTO and Alkbh5. Protein Expression and Purification. 167: 105540. PMID 31740367 DOI: 10.1016/J.Pep.2019.105540 |
0.365 |
|
| 2018 |
Purslow JA, Nguyen TT, Egner TK, Dotas RR, Khatiwada B, Venditti V. Active Site Breathing of Human Alkbh5 Revealed by Solution NMR and Accelerated Molecular Dynamics. Biophysical Journal. PMID 30352661 DOI: 10.1016/J.Bpj.2018.10.004 |
0.424 |
|
| 2018 |
Purslow JA, Venditti V. H, N, C backbone resonance assignment of human Alkbh5. Biomolecular Nmr Assignments. PMID 29858729 DOI: 10.1007/S12104-018-9826-3 |
0.393 |
|
| 2018 |
Evangelidis T, Nerli S, Nováček J, Brereton AE, Karplus PA, Dotas RR, Venditti V, Sgourakis NG, Tripsianes K. Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra. Nature Communications. 9: 384. PMID 29374165 DOI: 10.1038/S41467-017-02592-Z |
0.324 |
|
| 2018 |
Venditti V, Fawzi NL. Probing the Atomic Structure of Transient Protein Contacts by Paramagnetic Relaxation Enhancement Solution NMR. Methods in Molecular Biology (Clifton, N.J.). 1688: 243-255. PMID 29151213 DOI: 10.1007/978-1-4939-7386-6_12 |
0.365 |
|
| 2017 |
Dotas RR, Venditti V. (1)H, (15)N, (13)C backbone resonance assignment of the C-terminal domain of enzyme I from Thermoanaerobacter tengcongensis. Biomolecular Nmr Assignments. PMID 29064000 DOI: 10.1007/S12104-017-9788-X |
0.399 |
|
| 2016 |
Venditti V, Egner TK, Clore GM. Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering. Chemical Reviews. 116: 6305-22. PMID 26739383 DOI: 10.1021/Acs.Chemrev.5B00592 |
0.358 |
|
| 2015 |
Venditti V, Schwieters CD, Grishaev A, Clore GM. Dynamic equilibrium between closed and partially closed states of the bacterial Enzyme I unveiled by solution NMR and X-ray scattering. Proceedings of the National Academy of Sciences of the United States of America. 112: 11565-70. PMID 26305976 DOI: 10.1073/Pnas.1515366112 |
0.372 |
|
| 2015 |
Venditti V, Tugarinov V, Schwieters CD, Grishaev A, Clore GM. Large interdomain rearrangement triggered by suppression of micro- to millisecond dynamics in bacterial Enzyme I. Nature Communications. 6: 5960. PMID 25581904 DOI: 10.1038/Ncomms6960 |
0.394 |
|
| 2014 |
Tugarinov V, Venditti V, Marius Clore G. A NMR experiment for simultaneous correlations of valine and leucine/isoleucine methyls with carbonyl chemical shifts in proteins. Journal of Biomolecular Nmr. 58: 1-8. PMID 24346684 DOI: 10.1007/S10858-013-9803-1 |
0.302 |
|
| 2013 |
Clore GM, Venditti V. Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system. Trends in Biochemical Sciences. 38: 515-30. PMID 24055245 DOI: 10.1016/J.Tibs.2013.08.003 |
0.332 |
|
| 2013 |
Venditti V, Ghirlando R, Clore GM. Structural basis for enzyme I inhibition by α-ketoglutarate. Acs Chemical Biology. 8: 1232-40. PMID 23506042 DOI: 10.1021/Cb400027Q |
0.315 |
|
| 2012 |
Venditti V, Clore GM. Conformational selection and substrate binding regulate the monomer/dimer equilibrium of the C-terminal domain of Escherichia coli enzyme I. The Journal of Biological Chemistry. 287: 26989-98. PMID 22722931 DOI: 10.1074/Jbc.M112.382291 |
0.422 |
|
| 2012 |
Bernini A, Spiga O, Venditti V, Prischi F, Botta M, Croce G, Tong AP, Wong WT, Niccolai N. The use of a ditopic Gd(III) paramagnetic probe for investigating α-bungarotoxin surface accessibility. Journal of Inorganic Biochemistry. 112: 25-31. PMID 22542593 DOI: 10.1016/J.Jinorgbio.2012.03.004 |
0.359 |
|
| 2012 |
Venditti V, Fawzi NL, Clore GM. An efficient protocol for incorporation of an unnatural amino acid in perdeuterated recombinant proteins using glucose-based media. Journal of Biomolecular Nmr. 52: 191-5. PMID 22350951 DOI: 10.1007/S10858-012-9606-9 |
0.302 |
|
| 2011 |
Venditti V, Fawzi NL, Clore GM. Automated sequence- and stereo-specific assignment of methyl-labeled proteins by paramagnetic relaxation and methyl-methyl nuclear Overhauser enhancement spectroscopy. Journal of Biomolecular Nmr. 51: 319-28. PMID 21935714 DOI: 10.1007/S10858-011-9559-4 |
0.304 |
|
| 2011 |
Spiga O, Summa D, Cirri S, Bernini A, Venditti V, De Chiara M, Priora R, Frosali S, Margaritis A, Di Giuseppe D, Di Simplicio P, Niccolai N. A structurally driven analysis of thiol reactivity in mammalian albumins. Biopolymers. 95: 278-85. PMID 21280023 DOI: 10.1002/Bip.21577 |
0.37 |
|
| 2009 |
Venditti V, Clos L, Niccolai N, Butcher SE. Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping. Journal of Molecular Biology. 391: 894-905. PMID 19591840 DOI: 10.1016/J.Jmb.2009.07.003 |
0.63 |
|
| 2009 |
Bernini A, Venditti V, Spiga O, Niccolai N. Probing protein surface accessibility with solvent and paramagnetic molecules Progress in Nuclear Magnetic Resonance Spectroscopy. 54: 278-289. DOI: 10.1016/J.Pnmrs.2008.10.003 |
0.31 |
|
| 2008 |
Bernini A, Venditti V, Spiga O, Ciutti A, Prischi F, Consonni R, Zetta L, Arosio I, Fusi P, Guagliardi A, Niccolai N. NMR studies on the surface accessibility of the archaeal protein Sso7d by using TEMPOL and Gd(III)(DTPA-BMA) as paramagnetic probes. Biophysical Chemistry. 137: 71-5. PMID 18678440 DOI: 10.1016/J.Bpc.2008.07.003 |
0.381 |
|
| 2008 |
Staple DW, Venditti V, Niccolai N, Elson-Schwab L, Tor Y, Butcher SE. Guanidinoneomycin B recognition of an HIV-1 RNA helix. Chembiochem : a European Journal of Chemical Biology. 9: 93-102. PMID 18058789 DOI: 10.1002/Cbic.200700251 |
0.593 |
|
| 2008 |
Venditti V, Niccolai N, Butcher SE. Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL. Nucleic Acids Research. 36: e20. PMID 18056080 DOI: 10.1093/Nar/Gkm1062 |
0.658 |
|
| 2007 |
Venditti V, Bernini A, De Simone A, Spiga O, Prischi F, Niccolai N. MD and NMR studies of alpha-bungarotoxin surface accessibility. Biochemical and Biophysical Research Communications. 356: 114-7. PMID 17336923 DOI: 10.1016/J.Bbrc.2007.02.094 |
0.379 |
|
| 2007 |
Sashital DG, Venditti V, Angers CG, Cornilescu G, Butcher SE. Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human. Rna (New York, N.Y.). 13: 328-38. PMID 17242306 DOI: 10.1261/Rna.418407 |
0.675 |
|
| 2006 |
Bernini A, Spiga O, Venditti V, Prischi F, Bracci L, Tong AP, Wong WT, Niccolai N. NMR studies of lysozyme surface accessibility by using different paramagnetic relaxation probes. Journal of the American Chemical Society. 128: 9290-1. PMID 16848438 DOI: 10.1021/Ja062109Y |
0.359 |
|
| 2006 |
Bernini A, Spiga O, Ciutti A, Venditti V, Prischi F, Governatori M, Bracci L, Lelli B, Pileri S, Botta M, Barge A, Laschi F, Niccolai N. NMR studies of BPTI aggregation by using paramagnetic relaxation reagents. Biochimica Et Biophysica Acta. 1764: 856-62. PMID 16627014 DOI: 10.1016/J.Bbapap.2006.02.013 |
0.314 |
|
| 2005 |
Varrazzo D, Bernini A, Spiga O, Ciutti A, Chiellini S, Venditti V, Bracci L, Niccolai N. Three-dimensional computation of atom depth in complex molecular structures. Bioinformatics (Oxford, England). 21: 2856-60. PMID 15827080 DOI: 10.1093/Bioinformatics/Bti444 |
0.304 |
|
| 2004 |
Bernini A, Spiga O, Ciutti A, Chiellini S, Menciassi N, Venditti V, Niccolai N. On the dynamics of water molecules at the protein solute interfaces. Homeopathy. 93: 199-202. PMID 15532699 DOI: 10.1016/J.Homp.2004.07.002 |
0.362 |
|
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