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Jeffrey W. Peng - Publications

Affiliations: 
Chemistry and Biochemistry University of Notre Dame, Notre Dame, IN, United States 
Area:
bio-molecular dynamics
Website:
http://chemistry.nd.edu/faculty/detail/jpeng/
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang M, Frederick TE, VanPelt J, Case DA, Peng JW. Coupled intra- and interdomain dynamics support domain cross-talk in Pin1. The Journal of Biological Chemistry. 295: 16585-16603. PMID 33453896 DOI: 10.1074/jbc.RA120.015849  0.34
2020 Stoffel S, Zhang QW, Li DH, Smith BD, Peng JW. NMR Relaxation Dispersion Reveals Macrocycle Breathing Dynamics in a Cyclodextrin-based Rotaxane. Journal of the American Chemical Society. PMID 32212648 DOI: 10.1021/Jacs.9B12524  0.397
2018 Born A, Nichols PJ, Henen MA, Chi CN, Strotz D, Bayer P, Tate SI, Peng JW, Vögeli B. Backbone and side-chain chemical shift assignments of full-length, apo, human Pin1, a phosphoprotein regulator with interdomain allostery. Biomolecular Nmr Assignments. PMID 30353504 DOI: 10.1007/S12104-018-9857-9  0.384
2018 Zhang M, Case DA, Peng JW. Propagated Perturbations from a Peripheral Mutation Show Interactions Supporting WW Domain Thermostability. Structure (London, England : 1993). PMID 30197038 DOI: 10.1016/J.Str.2018.07.014  0.366
2018 Bouchard JJ, Xia J, Case DA, Peng JW. Enhanced sampling of interdomain motion using map-restrained Langevin Dynamics and NMR: Application to Pin1. Journal of Molecular Biology. PMID 29775635 DOI: 10.1016/J.Jmb.2018.05.007  0.459
2018 Frederick TE, Peng JW. A gratuitous β-Lactamase inducer uncovers hidden active site dynamics of the Staphylococcus aureus BlaR1 sensor domain. Plos One. 13: e0197241. PMID 29771929 DOI: 10.1371/Journal.Pone.0197241  0.473
2018 Mahoney BJ, Zhang M, Zintsmaster JS, Peng JW. Extended Impact of Pin1 Catalytic Loop Phosphorylation Revealed by S71E Phosphomimetic. Journal of Molecular Biology. PMID 29317221 DOI: 10.1016/J.Jmb.2017.12.021  0.434
2018 Massi F, Peng JW. Characterizing Protein Dynamics with NMR R 1ρ Relaxation Experiments. Methods in Molecular Biology (Clifton, N.J.). 1688: 205-221. PMID 29151211 DOI: 10.1007/978-1-4939-7386-6_10  0.406
2015 Wang X, Mahoney BJ, Zhang M, Zintsmaster JS, Peng JW. Negative Regulation of Peptidyl-Prolyl Isomerase Activity by Interdomain Contact in Human Pin1. Structure (London, England : 1993). PMID 26602185 DOI: 10.1016/J.Str.2015.08.019  0.427
2015 Peng JW. Investigating Dynamic Interdomain Allostery in Pin1. Biophysical Reviews. 7: 239-249. PMID 26495045 DOI: 10.1007/S12551-015-0171-9  0.385
2015 Staude MW, Frederick TE, Natarajan SV, Wilson BD, Tanner CE, Ruggiero ST, Mobashery S, Peng JW. Investigation of signal transduction routes within the sensor/transducer protein BlaR1 of Staphylococcus aureus. Biochemistry. 54: 1600-10. PMID 25658195 DOI: 10.1021/Bi501463K  0.309
2014 Frederick TE, Wilson BD, Cha J, Mobashery S, Peng JW. Revealing cell-surface intramolecular interactions in the BlaR1 protein of methicillin-resistant Staphylococcus aureus by NMR spectroscopy. Biochemistry. 53: 10-2. PMID 24359467 DOI: 10.1021/Bi401552J  0.319
2013 Mercedes-Camacho AY, Mullins AB, Mason MD, Xu GG, Mahoney BJ, Wang X, Peng JW, Etzkorn FA. Kinetic isotope effects support the twisted amide mechanism of Pin1 peptidyl-prolyl isomerase. Biochemistry. 52: 7707-13. PMID 24116866 DOI: 10.1021/Bi400700B  0.335
2013 Wilson KA, Bouchard JJ, Peng JW. Interdomain interactions support interdomain communication in human Pin1. Biochemistry. 52: 6968-81. PMID 24020391 DOI: 10.1021/Bi401057X  0.414
2011 Borbulevych O, Kumarasiri M, Wilson B, Llarrull LI, Lee M, Hesek D, Shi Q, Peng J, Baker BM, Mobashery S. Lysine Nzeta-decarboxylation switch and activation of the beta-lactam sensor domain of BlaR1 protein of methicillin-resistant Staphylococcus aureus. The Journal of Biological Chemistry. 286: 31466-72. PMID 21775440 DOI: 10.1074/Jbc.M111.252189  0.316
2011 Namanja AT, Wang XJ, Xu B, Mercedes-Camacho AY, Wilson KA, Etzkorn FA, Peng JW. Stereospecific gating of functional motions in Pin1. Proceedings of the National Academy of Sciences of the United States of America. 108: 12289-94. PMID 21746900 DOI: 10.1073/Pnas.1019382108  0.732
2010 Morcos F, Chatterjee S, McClendon CL, Brenner PR, López-Rendón R, Zintsmaster J, Ercsey-Ravasz M, Sweet CR, Jacobson MP, Peng JW, Izaguirre JA. Modeling conformational ensembles of slow functional motions in Pin1-WW. Plos Computational Biology. 6: e1001015. PMID 21152000 DOI: 10.1371/Journal.Pcbi.1001015  0.468
2010 Namanja AT, Wang XJ, Xu B, Mercedes-Camacho AY, Wilson BD, Wilson KA, Etzkorn FA, Peng JW. Toward flexibility-activity relationships by NMR spectroscopy: dynamics of Pin1 ligands. Journal of the American Chemical Society. 132: 5607-9. PMID 20356313 DOI: 10.1021/Ja9096779  0.718
2009 Peng JW, Wilson BD, Namanja AT. Mapping the dynamics of ligand reorganization via 13CH3 and 13CH2 relaxation dispersion at natural abundance. Journal of Biomolecular Nmr. 45: 171-83. PMID 19639385 DOI: 10.1007/S10858-009-9349-4  0.724
2009 Peng JW. Communication breakdown: protein dynamics and drug design. Structure (London, England : 1993). 17: 319-20. PMID 19278644 DOI: 10.1016/J.Str.2009.02.004  0.335
2008 Zintsmaster JS, Wilson BD, Peng JW. Dynamics of ligand binding from 13C NMR relaxation dispersion at natural abundance. Journal of the American Chemical Society. 130: 14060-1. PMID 18834120 DOI: 10.1021/Ja805839Y  0.437
2008 Pasat G, Zintsmaster JS, Peng JW. Direct 13C-detection for carbonyl relaxation studies of protein dynamics. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 193: 226-32. PMID 18514001 DOI: 10.1016/J.Jmr.2008.05.003  0.356
2007 Namanja AT, Peng T, Zintsmaster JS, Elson AC, Shakour MG, Peng JW. Substrate recognition reduces side-chain flexibility for conserved hydrophobic residues in human Pin1. Structure (London, England : 1993). 15: 313-27. PMID 17355867 DOI: 10.1016/J.Str.2007.01.014  0.73
2007 Peng T, Zintsmaster JS, Namanja AT, Peng JW. Sequence-specific dynamics modulate recognition specificity in WW domains. Nature Structural & Molecular Biology. 14: 325-31. PMID 17334375 DOI: 10.1038/Nsmb1207  0.722
2003 Peng JW. New probes of ligand flexibility in drug design: transferred (13)C CSA-dipolar cross-correlated relaxation at natural abundance. Journal of the American Chemical Society. 125: 11116-30. PMID 12952494 DOI: 10.1021/ja030154p  0.308
1996 Peng JW, Schiffer CA, Xu P, van Gunsteren WF, Ernst RR. Investigations of peptide hydration using NMR and molecular dynamics simulations: A study of effects of water on the conformation and dynamics of antamanide. Journal of Biomolecular Nmr. 8: 453-76. PMID 20859779 DOI: 10.1007/Bf00228147  0.519
1996 Lefevre JF, Dayie KT, Peng JW, Wagner G. Internal mobility in the partially folded DNA binding and dimerization domains of GAL4: NMR analysis of the N-H spectral density functions. Biochemistry. 35: 2674-86. PMID 8611573 DOI: 10.1021/bi9526802  0.724
1995 Peng JW, Wagner G. Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields. Biochemistry. 34: 16733-52. PMID 8527448 DOI: 10.1021/Bi00051A023  0.414
1994 Peng JW, Wagner G. Investigation of protein motions via relaxation measurements. Methods in Enzymology. 239: 563-96. PMID 7830599 DOI: 10.1016/S0076-6879(94)39022-3  0.511
1992 Heinz DW, Hyberts SG, Peng JW, Priestle JP, Wagner G, Grütter MG. Changing the inhibitory specificity and function of the proteinase inhibitor eglin c by site-directed mutagenesis: functional and structural investigation. Biochemistry. 31: 8755-66. PMID 1390662  0.42
1992 Peng JW, Wagner G. Mapping of the spectral densities of N-H bond motions in eglin c using heteronuclear relaxation experiments. Biochemistry. 31: 8571-86. PMID 1390643 DOI: 10.1021/bi00151a027  0.463
1992 Wagner G, Thanabal V, Stockman BJ, Peng JW, Nirmala NR, Hyberts SG, Goldberg MS, Detlefsen DJ, Clubb RT, Adler M. NMR studies of structure and dynamics of isotope enriched proteins. Biopolymers. 32: 381-90. PMID 1320418 DOI: 10.1002/Bip.360320414  0.716
1992 Peng JW, Wagner G. Mapping of spectral density functions using heteronuclear NMR relaxation measurements Journal of Magnetic Resonance (1969). 98: 308-332. DOI: 10.1016/0022-2364(92)90135-T  0.394
1991 Peng JW, Thanabal V, Wagner G. 2D heteronuclear NMR measurements of spin-lattice relaxation times in the rotating frame of X nuclei in heteronuclear HX spin systems Journal of Magnetic Resonance (1969). 94: 82-100. DOI: 10.1016/0022-2364(91)90296-6  0.394
1991 Peng JW, Thanabal V, Wagner G. Improved accuracy of heteronuclear transverse relaxation time measurements in macromolecules. elimination of antiphase contributions Journal of Magnetic Resonance (1969). 95: 421-427. DOI: 10.1016/0022-2364(91)90233-J  0.338
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