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Tong Si - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Synthetic Biology, Metabolic engineering, Yeast, Directed evolution, Analytical Chemistry
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lee CJ, Qiu TA, Hong Z, Zhang Z, Min Y, Zhang L, Dai L, Zhao H, Si T, Sweedler JV. Profiling of d-alanine production by the microbial isolates of rat gut microbiota. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 36: e22446. PMID 35816159 DOI: 10.1096/fj.202101595R  0.459
2020 Xue P, Si T, Zhao H. Optically guided mass spectrometry to screen microbial colonies for directed enzyme evolution. Methods in Enzymology. 644: 255-273. PMID 32943148 DOI: 10.1016/Bs.Mie.2020.04.054  0.5
2020 Xue P, Si T, Mishra S, Zhang L, Choe K, Sweedler JV, Zhao H. A Mass Spectrometry-based High-throughput Screening Method for Engineering Fatty Acid Synthases with Improved Production of Medium Chain Fatty Acids. Biotechnology and Bioengineering. PMID 32219854 DOI: 10.1002/Bit.27343  0.558
2018 Si T, Tian Q, Min Y, Zhang L, Sweedler JV, van der Donk WA, Zhao H. Rapid structure-activity screening of lanthipeptide analogs via in-colony removal of leader peptides in Escherichia coli. Journal of the American Chemical Society. PMID 30183279 DOI: 10.1021/Jacs.8B05544  0.604
2017 Si T, Li B, Comi TJ, Wu Y, Hu P, Wu Y, Min Y, Mitchell DA, Zhao H, Sweedler JV. Profiling of microbial colonies for high-throughput engineering of multi-step enzymatic reactions via optically guided MALDI MS. Journal of the American Chemical Society. PMID 28792758 DOI: 10.1021/Jacs.7B04641  0.554
2017 Chao R, Mishra S, Si T, Zhao H. Engineering biological systems using automated biofoundries. Metabolic Engineering. PMID 28602523 DOI: 10.1016/J.Ymben.2017.06.003  0.439
2017 Si T, Chao R, Min Y, Wu Y, Ren W, Zhao H. Automated multiplex genome-scale engineering in yeast. Nature Communications. 8: 15187. PMID 28469255 DOI: 10.1038/Ncomms15187  0.478
2017 Chao R, Liang J, Tasan I, Si T, Ju L, Zhao H. Fully automated one-step synthesis of single-transcript TALEN pairs using a biological foundry. Acs Synthetic Biology. PMID 28103009 DOI: 10.1021/Acssynbio.6B00293  0.433
2016 Si T, Zhao H. A brief overview of synthetic biology research programs and roadmap studies in the United States. Synthetic and Systems Biotechnology. 1: 258-264. PMID 29062951 DOI: 10.1016/J.Synbio.2016.08.003  0.39
2016 Si T, Zhao H. RNAi-Assisted Genome Evolution (RAGE) in Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 1470: 183-98. PMID 27581294 DOI: 10.1007/978-1-4939-6337-9_15  0.456
2016 Li B, Comi TJ, Si T, Dunham SJ, Sweedler JV. A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms. Journal of Mass Spectrometry : Jms. 51: 1030-1035. PMID 27476992 DOI: 10.1002/Jms.3827  0.436
2016 Shi S, Si T, Liu Z, Zhang H, Ang EL, Zhao H. Metabolic engineering of a synergistic pathway for n-butanol production in Saccharomyces cerevisiae. Scientific Reports. 6: 25675. PMID 27161023 DOI: 10.1038/Srep25675  0.656
2016 Si T, Li B, Zhang K, Xu Y, Zhao H, Sweedler JV. Characterization of Bacillus subtilis Colony Biofilms via Mass Spectrometry and Fluorescence Imaging. Journal of Proteome Research. 15: 1955-62. PMID 27136705 DOI: 10.1021/Acs.Jproteome.6B00127  0.518
2015 Si T, HamediRad M, Zhao H. Regulatory RNA-assisted genome engineering in microorganisms. Current Opinion in Biotechnology. 36: 85-90. PMID 26319896 DOI: 10.1016/J.Copbio.2015.08.003  0.429
2015 Li S, Si T, Wang M, Zhao H. Development of a Synthetic Malonyl-CoA Sensor in Saccharomyces cerevisiae for Intracellular Metabolite Monitoring and Genetic Screening. Acs Synthetic Biology. PMID 26149896 DOI: 10.1021/Acssynbio.5B00069  0.432
2015 Bao Z, Xiao H, Liang J, Zhang L, Xiong X, Sun N, Si T, Zhao H. Homology-integrated CRISPR-Cas (HI-CRISPR) system for one-step multigene disruption in Saccharomyces cerevisiae. Acs Synthetic Biology. 4: 585-94. PMID 25207793 DOI: 10.1021/Sb500255K  0.511
2015 Si T, Luo Y, Bao Z, Zhao H. RNAi-assisted genome evolution in Saccharomyces cerevisiae for complex phenotype engineering. Acs Synthetic Biology. 4: 283-91. PMID 24758359 DOI: 10.1021/Sb500074A  0.503
2014 Si T, Xiao H, Zhao H. Rapid prototyping of microbial cell factories via genome-scale engineering. Biotechnology Advances. PMID 25450192 DOI: 10.1016/J.Biotechadv.2014.11.007  0.471
2014 Liang Y, Si T, Ang EL, Zhao H. Engineered pentafunctional minicellulosome for simultaneous saccharification and ethanol fermentation in Saccharomyces cerevisiae. Applied and Environmental Microbiology. 80: 6677-84. PMID 25149522 DOI: 10.1128/Aem.02070-14  0.646
2014 Lian J, Si T, Nair NU, Zhao H. Design and construction of acetyl-CoA overproducing Saccharomyces cerevisiae strains. Metabolic Engineering. 24: 139-49. PMID 24853351 DOI: 10.1016/J.Ymben.2014.05.010  0.635
2014 Si T, Luo Y, Xiao H, Zhao H. Utilizing an endogenous pathway for 1-butanol production in Saccharomyces cerevisiae. Metabolic Engineering. 22: 60-8. PMID 24412568 DOI: 10.1016/J.Ymben.2014.01.002  0.473
2012 Du J, Yuan Y, Si T, Lian J, Zhao H. Customized optimization of metabolic pathways by combinatorial transcriptional engineering. Nucleic Acids Research. 40: e142. PMID 22718979 DOI: 10.1093/Nar/Gks549  0.423
2012 Cobb RE, Si T, Zhao H. Directed evolution: an evolving and enabling synthetic biology tool. Current Opinion in Chemical Biology. 16: 285-91. PMID 22673064 DOI: 10.1016/J.Cbpa.2012.05.186  0.437
2012 Sun J, Wen F, Si T, Xu JH, Zhao H. Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome. Applied and Environmental Microbiology. 78: 3837-45. PMID 22447594 DOI: 10.1128/Aem.07679-11  0.594
2012 Wang M, Si T, Zhao H. Biocatalyst development by directed evolution. Bioresource Technology. 115: 117-25. PMID 22310212 DOI: 10.1016/J.Biortech.2012.01.054  0.483
2008 Yu CH, Si T, Wu WH, Hu J, Du JT, Zhao YF, Li YM. O-GlcNAcylation modulates the self-aggregation ability of the fourth microtubule-binding repeat of tau. Biochemical and Biophysical Research Communications. 375: 59-62. PMID 18671940 DOI: 10.1016/J.Bbrc.2008.07.101  0.398
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