| Year |
Citation |
Score |
| 2023 |
Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, ... ... Volders PJ, et al. Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision. Nature Methods. PMID 37443337 DOI: 10.1038/s41592-023-01944-6 |
0.366 |
|
| 2023 |
Salz R, Saraiva-Agostinho N, Vorsteveld E, van der Made CI, Kersten S, Stemerdink M, Allen J, Volders PJ, Hunt SE, Hoischen A, 't Hoen PAC. SUsPECT: a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation. Bmc Genomics. 24: 305. PMID 37280537 DOI: 10.1186/s12864-023-09391-5 |
0.308 |
|
| 2022 |
Vromman M, Anckaert J, Vandesompele J, Volders PJ. CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification. Frontiers in Bioinformatics. 2: 834655. PMID 36304334 DOI: 10.3389/fbinf.2022.834655 |
0.325 |
|
| 2022 |
Shiferaw GA, Gabriels R, Bouwmeester R, Van Den Bossche T, Vandermarliere E, Martens L, Volders PJ. Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator. Journal of Proteome Research. 21: 1365-1370. PMID 35446579 DOI: 10.1021/acs.jproteome.2c00075 |
0.62 |
|
| 2022 |
Delhaye L, De Bruycker E, Volders PJ, Fijalkowska D, De Sutter D, Degroeve S, Martens L, Mestdagh P, Eyckerman S. Orthogonal proteomics methods to unravel the HOTAIR interactome. Scientific Reports. 12: 1513. PMID 35087108 DOI: 10.1038/s41598-022-05405-6 |
0.741 |
|
| 2021 |
Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, et al. Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs. Nature Biotechnology. PMID 34183863 DOI: 10.1038/s41587-021-00996-3 |
0.306 |
|
| 2021 |
Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, et al. The RNA Atlas expands the catalog of human non-coding RNAs. Nature Biotechnology. PMID 34140680 DOI: 10.1038/s41587-021-00936-1 |
0.357 |
|
| 2021 |
Salz R, Bouwmeester R, Gabriels R, Degroeve S, Martens L, Volders PJ, 't Hoen PAC. Personalized Proteome: Comparing Proteogenomics and Open Variant Search Approaches for Single Amino Acid Variant Detection. Journal of Proteome Research. 20: 3353-3364. PMID 33998808 DOI: 10.1021/acs.jproteome.1c00264 |
0.769 |
|
| 2021 |
Gong S, Gaccioli F, Dopierala J, Sovio U, Cook E, Volders PJ, Martens L, Kirk PDW, Richardson S, Smith GCS, Charnock-Jones DS. The RNA landscape of the human placenta in health and disease. Nature Communications. 12: 2639. PMID 33976128 DOI: 10.1038/s41467-021-22695-y |
0.597 |
|
| 2020 |
Shiferaw GA, Vandermarliere E, Hulstaert N, Gabriels R, Martens L, Volders PJ. COSS: A Fast and User-Friendly Tool for Spectral Library Searching. Journal of Proteome Research. PMID 32384242 DOI: 10.1021/Acs.Jproteome.9B00743 |
0.702 |
|
| 2020 |
Vromman M, Vandesompele J, Volders PJ. Closing the circle: current state and perspectives of circular RNA databases. Briefings in Bioinformatics. PMID 31998941 DOI: 10.1093/Bib/Bbz175 |
0.526 |
|
| 2019 |
Mattioli K, Volders PJ, Gerhardinger C, Lee JC, Maass PG, Melé M, Rinn JL. High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity. Genome Research. PMID 30683753 DOI: 10.1101/Gr.242222.118 |
0.389 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, ... ... Volders P, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206 |
0.326 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, ... ... Volders P, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034 |
0.495 |
|
| 2018 |
Lorenzi L, Avila Cobos F, Decock A, Everaert C, Helsmoortel H, Lefever S, Verboom K, Volders PJ, Speleman F, Vandesompele J, Mestdagh P. Long noncoding RNA expression profiling in cancer: Challenges and opportunities. Genes, Chromosomes & Cancer. PMID 30461116 DOI: 10.1002/Gcc.22709 |
0.397 |
|
| 2018 |
Volders PJ, Anckaert J, Verheggen K, Nuytens J, Martens L, Mestdagh P, Vandesompele J. LNCipedia 5: towards a reference set of human long non-coding RNAs. Nucleic Acids Research. PMID 30371849 DOI: 10.1093/Nar/Gky1031 |
0.78 |
|
| 2018 |
Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, et al. Expanding the use of spectral libraries in proteomics. Journal of Proteome Research. PMID 30270626 DOI: 10.1021/Acs.Jproteome.8B00485 |
0.35 |
|
| 2018 |
Volders PJ, Lefever S, Baute S, Nuytens J, Vanderheyden K, Menten B, Mestdagh P, Vandesompele J. Targeted Genomic Screen Reveals Focal Long Non-Coding RNA Copy Number Alterations in Cancer Cell Lines. Non-Coding Rna. 4. PMID 30217017 DOI: 10.3390/Ncrna4030021 |
0.411 |
|
| 2018 |
Verboom K, Van Loocke W, Volders PJ, Decaesteker B, Avila Cobos F, Bornschein S, de Bock CE, Kalender Atak Z, Clappier E, Aerts S, Cools J, Soulier J, Taghon T, Van Vlierberghe P, Vandesompele J, et al. A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing. Haematologica. PMID 29954933 DOI: 10.3324/Haematol.2018.190587 |
0.327 |
|
| 2017 |
Lefever S, Anckaert J, Volders PJ, Luypaert M, Vandesompele J, Mestdagh P. decodeRNA- predicting non-coding RNA functions using guilt-by-association. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220434 DOI: 10.1093/Database/Bax042 |
0.415 |
|
| 2017 |
Jacobs EZ, Warrier S, Volders PJ, D'haene E, Van Lombergen E, Vantomme L, Van der Jeught M, Heindryckx B, Menten B, Vergult S. CRISPR/Cas9-mediated genome editing in naïve human embryonic stem cells. Scientific Reports. 7: 16650. PMID 29192200 DOI: 10.1038/S41598-017-16932-Y |
0.322 |
|
| 2017 |
Verheggen K, Volders PJ, Mestdagh P, Menschaert G, Van Damme P, Gevaert K, Martens L, Vandesompele J. Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products. Journal of Proteome Research. 16: 2508-2515. PMID 28534634 DOI: 10.1021/Acs.Jproteome.7B00085 |
0.784 |
|
| 2017 |
Avila Cobos F, Anckaert J, Volders PJ, Everaert C, Rombaut D, Vandesompele J, De Preter K, Mestdagh P. Zipper plot: visualizing transcriptional activity of genomic regions. Bmc Bioinformatics. 18: 231. PMID 28464823 DOI: 10.1186/S12859-017-1651-7 |
0.462 |
|
| 2017 |
Hulstaert E, Brochez L, Volders PJ, Vandesompele J, Mestdagh P. Long non-coding RNAs in cutaneous melanoma: clinical perspectives. Oncotarget. 8: 43470-43480. PMID 28415644 DOI: 10.18632/Oncotarget.16478 |
0.413 |
|
| 2017 |
Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, ... ... Volders PJ, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008 |
0.431 |
|
| 2016 |
Mestdagh P, Lefever S, Volders PJ, Derveaux S, Hellemans J, Vandesompele J. Long non-coding RNA expression profiling in the NCI60 cancer cell line panel using high-throughput RT-qPCR. Scientific Data. 3: 160052. PMID 27377824 DOI: 10.1038/Sdata.2016.52 |
0.43 |
|
| 2016 |
D'haene E, Jacobs EZ, Volders PJ, De Meyer T, Menten B, Vergult S. Identification of long non-coding RNAs involved in neuronal development and intellectual disability. Scientific Reports. 6: 28396. PMID 27319317 DOI: 10.1038/Srep28396 |
0.427 |
|
| 2016 |
Durinck K, Loocke WV, Walle IVd, Meulen JVd, Volders P, Roy NV, Benoit Y, Poppe B, Mestdagh P, Vandesompele J, Rondou P, Taghon T, Soulier J, Vlierberghe PV, Speleman F. Abstract A28: Expanding the TLX1 regulome in T-cell acute lymphoblastic leukemia towards long noncoding RNAs Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-A28 |
0.424 |
|
| 2015 |
Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P. An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Research. 43: D174-80. PMID 25378313 DOI: 10.1093/Nar/Gku1060 |
0.792 |
|
| 2014 |
Sante T, Vergult S, Volders PJ, Kloosterman WP, Trooskens G, De Preter K, Dheedene A, Speleman F, De Meyer T, Menten B. ViVar: a comprehensive platform for the analysis and visualization of structural genomic variation. Plos One. 9: e113800. PMID 25503062 DOI: 10.1371/Journal.Pone.0113800 |
0.414 |
|
| 2014 |
Durinck K, Wallaert A, Van de Walle I, Van Loocke W, Volders PJ, Vanhauwaert S, Geerdens E, Benoit Y, Van Roy N, Poppe B, Soulier J, Cools J, Mestdagh P, Vandesompele J, Rondou P, et al. The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia. Haematologica. 99: 1808-16. PMID 25344525 DOI: 10.1182/Blood.V124.21.900.900 |
0.361 |
|
| 2013 |
Volders PJ, Helsens K, Wang X, Menten B, Martens L, Gevaert K, Vandesompele J, Mestdagh P. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Research. 41: D246-51. PMID 23042674 DOI: 10.1093/Nar/Gks915 |
0.801 |
|
| 2013 |
Durinck K, Van der Meulen J, Ongenaert M, Volders P, Wallaert A, Van Roy N, Benoit Y, Poppe B, Mestdagh P, Vandesompele J, Rondou P, Soulier J, Van Vlierberghe P, Speleman F. Expanding The TLX1-Regulome In T Cell Acute Lymphoblastic Leukemia Towards Long Non-Coding RNAs Blood. 122: 813-813. DOI: 10.1182/Blood.V122.21.813.813 |
0.41 |
|
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