| Year |
Citation |
Score |
| 2019 |
Wendte JM, Haag JR, Pontes OM, Singh J, Metcalf S, Pikaard CS. The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation. Nucleic Acids Research. PMID 31329950 DOI: 10.1093/Nar/Gkz615 |
0.861 |
|
| 2017 |
Wendte JM, Haag JR, Singh J, McKinlay A, Pontes OM, Pikaard CS. Functional Dissection of the Pol V Largest Subunit CTD in RNA-Directed DNA Methylation. Cell Reports. 19: 2796-2808. PMID 28658626 DOI: 10.1016/J.Celrep.2017.05.091 |
0.851 |
|
| 2017 |
Liu M, Ba Z, Costa-Nunes P, Wei W, Li L, Kong F, Li Y, Chai J, Pontes O, Qi Y. IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis. The Plant Cell. PMID 28223440 DOI: 10.1105/Tpc.16.00769 |
0.833 |
|
| 2015 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. Plos Genetics. 11: e1005452. PMID 26379054 DOI: 10.1371/journal.pgen.1005452 |
0.384 |
|
| 2014 |
da Costa-Nunes JA, Capitão C, Kozak J, Costa-Nunes P, Ducasa GM, Pontes O, Angelis KJ. The AtRAD21.1 and AtRAD21.3 Arabidopsis cohesins play a synergistic role in somatic DNA double strand break damage repair. Bmc Plant Biology. 14: 353. PMID 25511710 DOI: 10.1186/S12870-014-0353-9 |
0.78 |
|
| 2014 |
Costa-Nunes P, Kim JY, Hong E, Pontes O. The cytological and molecular role of domains rearranged methyltransferase3 in RNA-dependent DNA methylation of Arabidopsis thaliana. Bmc Research Notes. 7: 721. PMID 25316414 DOI: 10.1186/1756-0500-7-721 |
0.86 |
|
| 2014 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Weigel D, Pontes O, Ecker JR, Chen X. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis Plos Genetics. 10. PMID 24992598 DOI: 10.1371/Journal.Pgen.1004446 |
0.651 |
|
| 2014 |
Costa-Nunes P, Vitins A, Pontes O. Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 22: 225-40. PMID 24846724 DOI: 10.1007/S10577-014-9425-9 |
0.847 |
|
| 2013 |
Pontvianne F, Blevins T, Chandrasekhara C, Mozgová I, Hassel C, Pontes OM, Tucker S, Mokros P, Muchová V, Fajkus J, Pikaard CS. Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states. Genes & Development. 27: 1545-50. PMID 23873938 DOI: 10.1101/Gad.221648.113 |
0.823 |
|
| 2013 |
Pontes O, Vitins A, Ream TS, Hong E, Pikaard CS, Costa-Nunes P. Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains. Plos One. 8: e65652. PMID 23776518 DOI: 10.1371/Journal.Pone.0065652 |
0.804 |
|
| 2012 |
Pikaard CS, Haag JR, Pontes OM, Blevins T, Cocklin R. A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation. Cold Spring Harbor Symposia On Quantitative Biology. 77: 205-12. PMID 23567894 DOI: 10.1101/Sqb.2013.77.014803 |
0.851 |
|
| 2012 |
Qian W, Miki D, Zhang H, Liu Y, Zhang X, Tang K, Kan Y, La H, Li X, Li S, Zhu X, Shi X, Zhang K, Pontes O, Chen X, et al. A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science (New York, N.Y.). 336: 1445-8. PMID 22700931 DOI: 10.1126/Science.1219416 |
0.503 |
|
| 2012 |
Martínez-Macías MI, Qian W, Miki D, Pontes O, Liu Y, Tang K, Liu R, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, Zhu JK. A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis. Molecular Cell. 45: 357-70. PMID 22325353 DOI: 10.1016/J.Molcel.2011.11.034 |
0.467 |
|
| 2012 |
Xie M, Ren G, Costa-Nunes P, Pontes O, Yu B. A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Research. 40: 4422-31. PMID 22302148 DOI: 10.1093/Nar/Gks034 |
0.857 |
|
| 2011 |
Hoffer P, Ivashuta S, Pontes O, Vitins A, Pikaard C, Mroczka A, Wagner N, Voelker T. Posttranscriptional gene silencing in nuclei. Proceedings of the National Academy of Sciences of the United States of America. 108: 409-14. PMID 21173264 DOI: 10.1073/Pnas.1009805108 |
0.845 |
|
| 2010 |
Costa-Nunes P, Pontes O, Preuss SB, Pikaard CS. Extra views on RNA-dependent DNA methylation and MBD6-dependent heterochromatin formation in nucleolar dominance. Nucleus (Austin, Tex.). 1: 254-9. PMID 21327072 DOI: 10.4161/Nucl.1.3.11741 |
0.866 |
|
| 2010 |
Earley KW, Pontvianne F, Wierzbicki AT, Blevins T, Tucker S, Costa-Nunes P, Pontes O, Pikaard CS. Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation. Genes & Development. 24: 1119-32. PMID 20516197 DOI: 10.1101/Gad.1914110 |
0.825 |
|
| 2010 |
Searle IR, Pontes O, Melnyk CW, Smith LM, Baulcombe DC. JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis. Genes & Development. 24: 986-91. PMID 20478993 DOI: 10.1101/Gad.579910 |
0.643 |
|
| 2010 |
Gao Z, Liu HL, Daxinger L, Pontes O, He X, Qian W, Lin H, Xie M, Lorkovic ZJ, Zhang S, Miki D, Zhan X, Pontier D, Lagrange T, Jin H, et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature. 465: 106-9. PMID 20410883 DOI: 10.1038/Nature09025 |
0.807 |
|
| 2009 |
He XJ, Hsu YF, Zhu S, Liu HL, Pontes O, Zhu J, Cui X, Wang CS, Zhu JK. A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes & Development. 23: 2717-22. PMID 19903758 DOI: 10.1101/Gad.1851809 |
0.657 |
|
| 2009 |
Pontes O, Costa-Nunes P, Vithayathil P, Pikaard CS. RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway. Molecular Plant. 2: 700-10. PMID 19825650 DOI: 10.1093/Mp/Ssp006 |
0.885 |
|
| 2009 |
Blevins T, Pontes O, Pikaard CS, Meins F. Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis. Plos One. 4: e5932. PMID 19529764 DOI: 10.1371/Journal.Pone.0005932 |
0.869 |
|
| 2009 |
He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK. An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell. 137: 498-508. PMID 19410546 DOI: 10.1016/J.Cell.2009.04.028 |
0.861 |
|
| 2009 |
He XJ, Hsu YF, Pontes O, Zhu J, Lu J, Bressan RA, Pikaard C, Wang CS, Zhu JK. NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes & Development. 23: 318-30. PMID 19204117 DOI: 10.1101/Gad.1765209 |
0.798 |
|
| 2009 |
Haag JR, Pontes O, Pikaard CS. Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing. Plos One. 4: e4110. PMID 19119310 DOI: 10.1371/Journal.Pone.0004110 |
0.859 |
|
| 2009 |
Pontes O, Vitins A, Pikaard C, Hong E, Ream T. Interactions Among Small Interfering RNAs And MicroRNAs in Arabidopsis Thaliana Microscopy and Microanalysis. 15: 878-879. DOI: 10.1017/S1431927609098018 |
0.825 |
|
| 2008 |
Preuss SB, Costa-Nunes P, Tucker S, Pontes O, Lawrence RJ, Mosher R, Kasschau KD, Carrington JC, Baulcombe DC, Viegas W, Pikaard CS. Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins. Molecular Cell. 32: 673-84. PMID 19061642 DOI: 10.1016/J.Molcel.2008.11.009 |
0.849 |
|
| 2008 |
Zheng X, Pontes O, Zhu J, Miki D, Zhang F, Li WX, Iida K, Kapoor A, Pikaard CS, Zhu JK. ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature. 455: 1259-62. PMID 18815596 DOI: 10.1038/Nature07305 |
0.783 |
|
| 2008 |
Pontes O, Pikaard CS. siRNA and miRNA processing: new functions for Cajal bodies. Current Opinion in Genetics & Development. 18: 197-203. PMID 18337083 DOI: 10.1016/J.Gde.2008.01.008 |
0.624 |
|
| 2007 |
Pontes O, Lawrence RJ, Silva M, Preuss S, Costa-Nunes P, Earley K, Neves N, Viegas W, Pikaard CS. Postembryonic establishment of megabase-scale gene silencing in nucleolar dominance. Plos One. 2: e1157. PMID 17987131 DOI: 10.1371/Journal.Pone.0001157 |
0.806 |
|
| 2007 |
Smith LM, Pontes O, Searle I, Yelina N, Yousafzai FK, Herr AJ, Pikaard CS, Baulcombe DC. An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. The Plant Cell. 19: 1507-21. PMID 17526749 DOI: 10.1105/Tpc.107.051540 |
0.752 |
|
| 2007 |
Woo HR, Pontes O, Pikaard CS, Richards EJ. VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes & Development. 21: 267-77. PMID 17242155 DOI: 10.1101/Gad.1512007 |
0.743 |
|
| 2007 |
Pikaard C, Pontes O. Heterochromatin: condense or excise. Nature Cell Biology. 9: 19-20. PMID 17199128 DOI: 10.1038/Ncb0107-19 |
0.659 |
|
| 2006 |
Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 126: 93-106. PMID 16839879 DOI: 10.1016/J.Cell.2006.05.032 |
0.78 |
|
| 2006 |
Pontes O, Li CF, Costa Nunes P, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell. 126: 79-92. PMID 16839878 DOI: 10.1016/J.Cell.2006.05.031 |
0.848 |
|
| 2006 |
Earley K, Lawrence RJ, Pontes O, Reuther R, Enciso AJ, Silva M, Neves N, Gross M, Viegas W, Pikaard CS. Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance. Genes & Development. 20: 1283-93. PMID 16648464 DOI: 10.1101/Gad.1417706 |
0.849 |
|
| 2006 |
Earley KW, Haag JR, Pontes O, Opper K, Juehne T, Song K, Pikaard CS. Gateway-compatible vectors for plant functional genomics and proteomics. The Plant Journal : For Cell and Molecular Biology. 45: 616-29. PMID 16441352 DOI: 10.1111/J.1365-313X.2005.02617.X |
0.771 |
|
| 2005 |
Onodera Y, Haag JR, Ream T, Costa Nunes P, Pontes O, Pikaard CS. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell. 120: 613-22. PMID 15766525 DOI: 10.1016/J.Cell.2005.02.007 |
0.857 |
|
| 2004 |
Pontes O, Neves N, Silva M, Lewis MS, Madlung A, Comai L, Viegas W, Pikaard CS. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proceedings of the National Academy of Sciences of the United States of America. 101: 18240-5. PMID 15604143 DOI: 10.1073/Pnas.0407258102 |
0.768 |
|
| 2004 |
Lawrence RJ, Earley K, Pontes O, Silva M, Chen ZJ, Neves N, Viegas W, Pikaard CS. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Molecular Cell. 13: 599-609. PMID 14992728 DOI: 10.1016/S1097-2765(04)00064-4 |
0.84 |
|
| 2003 |
Pontes O, Lawrence RJ, Neves N, Silva M, Lee JH, Chen ZJ, Viegas W, Pikaard CS. Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 11418-23. PMID 14504406 DOI: 10.1073/Pnas.1932522100 |
0.812 |
|
| 2000 |
Pontes O, Cotrim H, Pais S, Viegas W. Physical mapping, expression patterns and interphase organisation of rDNA loci in Portuguese endemic Silene cintrana and Silene rothmaleri. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 8: 313-7. PMID 10919722 DOI: 10.1023/A:1009279428484 |
0.305 |
|
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