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Jose M Jimenez-Gomez, Ph.D. - Publications

Affiliations: 
1999-2005 National Center of Biotechnology (CNB-CSIC), Spain 
 2006-2010 Plant Biology University of California, Davis, Davis, CA 
 2010-2016 Plant Breeding and Genetics Max Planck Institute for Plant Breeding Research 
 2013- IJPB INRA - Versailles 
Area:
Plant genetics, Genomics
Website:
https://sites.google.com/view/jimenez-gomez-lab/home
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sterken MG, Nijveen H, van Zanten M, Jiménez-Gómez JM, Geshnizjani N, Willems LAJ, Rienstra J, Hilhorst HWM, Ligterink W, Snoek BL. Plasticity of maternal environment-dependent expression-QTLs of tomato seeds. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 136: 28. PMID 36810666 DOI: 10.1007/s00122-023-04322-0  0.398
2022 Moreira JDR, Quiñones A, Lira BS, Robledo JM, Curtin SJ, Vicente MH, Ribeiro DM, Ryngajllo M, Jiménez-Gómez JM, Pereira Peres LE, Rossi M, Zsögön A. SELF PRUNING 3C is a flowering repressor that modulates seed germination, root architecture and drought responses. Journal of Experimental Botany. PMID 35710302 DOI: 10.1093/jxb/erac265  0.316
2022 Shwartz I, Yahav C, Kovetz N, Levy M, Israeli A, Bar M, Duval KL, Krall EG, Teboul N, Jiménez-Gómez JM, Deal RB, Ori N. The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing. Plos Genetics. 18: e1009633. PMID 35255095 DOI: 10.1371/journal.pgen.1009633  0.31
2021 Yuste-Lisbona FJ, Jiménez-Gómez JM, Capel C, Lozano R. Effective Mapping by Sequencing to Isolate Causal Mutations in the Tomato Genome. Methods in Molecular Biology (Clifton, N.J.). 2264: 89-103. PMID 33263905 DOI: 10.1007/978-1-0716-1201-9_7  0.343
2020 Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez-Gómez JM, Colot V, Quadrana L. The impact of transposable elements on tomato diversity. Nature Communications. 11: 4058. PMID 32792480 DOI: 10.1038/S41467-020-17874-2  0.459
2020 Yuste-Lisbona FJ, Fernández-Lozano A, Pineda B, Bretones S, Ortíz-Atienza A, García-Sogo B, Müller NA, Angosto T, Capel J, Moreno V, Jiménez-Gómez JM, Lozano R. regulates tomato fruit size through the floral meristem development network. Proceedings of the National Academy of Sciences of the United States of America. PMID 32179669 DOI: 10.1073/Pnas.1913688117  0.41
2020 Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisné S, Quadrana L, Loudet O, Colot V. Mild drought in the vegetative stage induces phenotypic, gene expression and DNA methylation plasticity in Arabidopsis but no transgenerational effects. Journal of Experimental Botany. PMID 32166321 DOI: 10.1093/Jxb/Eraa132  0.43
2019 Hu Y, Mesihovic A, Jiménez-Gómez JM, Röth S, Gebhardt P, Bublak D, Bovy A, Scharf KD, Schleiff E, Fragkostefanakis S. Natural variation in HsfA2 pre-mRNA splicing is associated with changes in thermotolerance during tomato domestication. The New Phytologist. PMID 31556121 DOI: 10.1111/Nph.16221  0.419
2019 Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB. Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nature Plants. PMID 31292536 DOI: 10.1038/S41477-019-0488-7  0.312
2019 Soyk S, Lemmon ZH, Sedlazeck FJ, Jiménez-Gómez JM, Alonge M, Hutton SF, Van Eck J, Schatz MC, Lippman ZB. Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato. Nature Plants. 5: 471-479. PMID 31061537 DOI: 10.1038/S41477-019-0422-Z  0.476
2019 Huertas R, Catalá R, Jimenez-Gomez J, Castellano MM, Crevillén P, Piñeiro M, Jarillo JA, Salinas J. Arabidopsis SME1 regulates plant development and response to abiotic stress by determining spliceosome activity specificity. The Plant Cell. PMID 30696706 DOI: 10.1105/Tpc.18.00689  0.393
2018 Fantini E, Sulli M, Zhang L, Aprea G, Jiménez-Gómez JM, Bendahmane A, Perrotta G, Giuliano G, Facella P. Pivotal roles of cryptochromes 1a and 2 in tomato development and physiology. Plant Physiology. PMID 30541876 DOI: 10.1104/Pp.18.00793  0.425
2018 Olate E, Jiménez-Gómez JM, Holuigue L, Salinas J. NPR1 mediates a novel regulatory pathway in cold acclimation by interacting with HSFA1 factors. Nature Plants. 4: 811-823. PMID 30250280 DOI: 10.1038/S41477-018-0254-2  0.408
2018 Müller NA, Zhang L, Koornneef M, Jiménez-Gómez JM. Mutations in and caused light-conditional clock deceleration during tomato domestication. Proceedings of the National Academy of Sciences of the United States of America. PMID 29789384 DOI: 10.1073/Pnas.1801862115  0.623
2017 Magnani E, Jiménez-Gómez JM, Soubigou-Taconnat L, Lepiniec L, Fiume E. Profiling the onset of somatic embryogenesis in Arabidopsis. Bmc Genomics. 18: 998-998. PMID 29284399 DOI: 10.1186/S12864-017-4391-1  0.349
2017 Serin EAR, Snoek LB, Nijveen H, Willems LAJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W. Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population. Frontiers in Genetics. 8: 201. PMID 29259624 DOI: 10.3389/Fgene.2017.00201  0.352
2017 Álvarez MF, Angarita M, Delgado MC, García C, Jiménez-Gomez J, Gebhardt C, Mosquera T. Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja. Frontiers in Plant Science. 8: 1040. PMID 28674545 DOI: 10.3389/Fpls.2017.01040  0.395
2017 Costa MD, Artur MA, Maia J, Jonkheer E, Derks MF, Nijveen H, Williams B, Mundree SG, Jiménez-Gómez JM, Hesselink T, Schijlen EG, Ligterink W, Oliver MJ, Farrant JM, Hilhorst HW. A footprint of desiccation tolerance in the genome of Xerophyta viscosa. Nature Plants. 3: 17038. PMID 28346448 DOI: 10.1038/Nplants.2017.38  0.482
2017 Bazakos C, Hanemian M, Trontin C, Jiménez-Gómez JM, Loudet O. New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype. Annual Review of Plant Biology. PMID 28226236 DOI: 10.1146/Annurev-Arplant-042916-040820  0.482
2016 Soyk S, Müller NA, Park SJ, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez JM, Lippman ZB. Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nature Genetics. PMID 27918538 DOI: 10.1038/Ng.3733  0.404
2016 Bar M, Israeli A, Levy M, Ben Gera H, Jiménez-Gómez J, Kouril S, Tarkowski P, Ori N. CLAUSA is a MYB Transcription Factor that Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. The Plant Cell. PMID 27385816 DOI: 10.1105/Tpc.16.00211  0.375
2016 Mosquera T, Alvarez MF, Jiménez-Gómez JM, Muktar MS, Paulo MJ, Steinemann S, Li J, Draffehn A, Hofmann A, Lübeck J, Strahwald J, Tacke E, Hofferbert HR, Walkemeier B, Gebhardt C. Targeted and Untargeted Approaches Unravel Novel Candidate Genes and Diagnostic SNPs for Quantitative Resistance of the Potato (Solanum tuberosum L.) to Phytophthora infestans Causing the Late Blight Disease. Plos One. 11: e0156254. PMID 27281327 DOI: 10.1371/Journal.Pone.0156254  0.408
2016 Srinivasan A, Jiménez-Gómez JM, Fornara F, Soppe WJ, Brambilla V. Alternative splicing enhances transcriptome complexity in desiccating seeds. Journal of Integrative Plant Biology. PMID 27121908 DOI: 10.1111/Jipb.12482  0.38
2016 Müller NA, Jiménez-Gómez JM. Analysis of Circadian Leaf Movements. Methods in Molecular Biology (Clifton, N.J.). 1398: 71-9. PMID 26867616 DOI: 10.1007/978-1-4939-3356-3_7  0.397
2016 Perea-Resa C, Carrasco-López C, Catalá R, Turečková V, Novak O, Zhang W, Sieburth LE, Jiménez-Gómez J, Salinas J. The LSM1-7 complex differentially regulates Arabidopsis tolerance to abiotic stress conditions by promoting selective mRNA decapping. The Plant Cell. PMID 26764377 DOI: 10.1105/Tpc.15.00867  0.404
2015 Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM. Domestication selected for deceleration of the circadian clock in cultivated tomato. Nature Genetics. PMID 26569124 DOI: 10.1038/Ng.3447  0.661
2014 Schmalenbach I, Zhang L, Reymond M, Jiménez-Gómez JM. The relationship between flowering time and growth responses to drought in the Arabidopsis Landsberg erecta x Antwerp-1 population. Frontiers in Plant Science. 5: 609. PMID 25426126 DOI: 10.3389/Fpls.2014.00609  0.41
2014 Gloggnitzer J, Akimcheva S, Srinivasan A, Kusenda B, Riehs N, Stampfl H, Bautor J, Dekrout B, Jonak C, Jiménez-Gómez JM, Parker JE, Riha K. Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense. Cell Host & Microbe. 16: 376-90. PMID 25211079 DOI: 10.1016/J.Chom.2014.08.010  0.33
2014 Schmalenbach I, Zhang L, Ryngajllo M, Jiménez-Gómez JM. Functional analysis of the Landsberg erecta allele of FRIGIDA. Bmc Plant Biology. 14: 218. PMID 25207670 DOI: 10.1186/S12870-014-0218-2  0.387
2014 Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046  0.652
2014 Jiménez-Gómez JM. Network types and their application in natural variation studies in plants. Current Opinion in Plant Biology. 18: 80-6. PMID 24632305 DOI: 10.1016/J.Pbi.2014.02.010  0.345
2011 Jiménez-Gómez JM. Next generation quantitative genetics in plants. Frontiers in Plant Science. 2: 77. PMID 22645550 DOI: 10.3389/Fpls.2011.00077  0.458
2011 Jimenez-Gomez JM, Corwin JA, Joseph B, Maloof JN, Kliebenstein DJ. Genomic analysis of QTLs and genes altering natural variation in stochastic noise. Plos Genetics. 7: e1002295. PMID 21980300 DOI: 10.1371/Journal.Pgen.1002295  0.624
2011 Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ. Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis. The Plant Cell. 23: 471-85. PMID 21343415 DOI: 10.1105/Tpc.110.082065  0.653
2010 Jiménez-Gómez JM, Wallace AD, Maloof JN. Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis. Plos Genetics. 6: e1001100. PMID 20838594 DOI: 10.1371/Journal.Pgen.1001100  0.657
2009 Jiménez-Gómez JM, Maloof JN. Sequence diversity in three tomato species: SNPs, markers, and molecular evolution. Bmc Plant Biology. 9: 85. PMID 19575805 DOI: 10.1186/1471-2229-9-85  0.613
2009 Jiménez-Gómez JM, Maloof JN. Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment. Embo Reports. 10: 568-72. PMID 19465891 DOI: 10.1038/embor.2009.116  0.571
2007 Jiménez-Gómez JM, Alonso-Blanco C, Borja A, Anastasio G, Angosto T, Lozano R, Martínez-Zapater JM. Quantitative genetic analysis of flowering time in tomato. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 50: 303-15. PMID 17502904 DOI: 10.1139/g07-009  0.381
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