Michael Beer - Publications

Affiliations: 
1958-1995 Physics Johns Hopkins University, Baltimore, MD 
Area:
Biophysics
Website:
https://hub.jhu.edu/2014/08/28/michael-beer-obit/

10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ghandi M, Mohammad-Noori M, Ghareghani N, Lee D, Garraway L, Beer MA. gkmSVM: an R package for gapped-kmer SVM. Bioinformatics (Oxford, England). PMID 27153639 DOI: 10.1093/bioinformatics/btw203  0.92
2015 Karnik R, Beer MA. Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space. Plos One. 10: e0140557. PMID 26465884 DOI: 10.1371/journal.pone.0140557  0.96
2015 Lee D, Gorkin DU, Baker M, Strober BJ, Asoni AL, McCallion AS, Beer MA. A method to predict the impact of regulatory variants from DNA sequence. Nature Genetics. PMID 26075791 DOI: 10.1038/ng.3331  0.56
2014 Pimkin M, Kossenkov AV, Mishra T, Morrissey CS, Wu W, Keller CA, Blobel GA, Lee D, Beer MA, Hardison RC, Weiss MJ. Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis. Genome Research. 24: 1932-44. PMID 25319996 DOI: 10.1101/gr.164178.113  0.56
2014 Ghandi M, Lee D, Mohammad-Noori M, Beer MA. Enhanced regulatory sequence prediction using gapped k-mer features. Plos Computational Biology. 10: e1003711. PMID 25033408 DOI: 10.1371/journal.pcbi.1003711  0.92
2014 Ghandi M, Mohammad-Noori M, Beer MA. Robust k-mer frequency estimation using gapped k-mers. Journal of Mathematical Biology. 69: 469-500. PMID 23861010 DOI: 10.1007/s00285-013-0705-3  0.92
2013 Fletez-Brant C, Lee D, McCallion AS, Beer MA. kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets. Nucleic Acids Research. 41: W544-56. PMID 23771147 DOI: 10.1093/nar/gkt519  0.56
2012 Gorkin DU, Lee D, Reed X, Fletez-Brant C, Bessling SL, Loftus SK, Beer MA, Pavan WJ, McCallion AS. Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes. Genome Research. 22: 2290-301. PMID 23019145 DOI: 10.1101/gr.139360.112  0.56
2012 Ghandi M, Beer MA. Group normalization for genomic data. Plos One. 7: e38695. PMID 22912661 DOI: 10.1371/journal.pone.0038695  0.92
2011 Lee D, Karchin R, Beer MA. Discriminative prediction of mammalian enhancers from DNA sequence. Genome Research. 21: 2167-80. PMID 21875935 DOI: 10.1101/gr.121905.111  0.56
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