Steven B. Haase - Publications

Duke University/ Department of Biology 
genetics, genomics, systems biology, computational biology

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Smith LM, Motta FC, Chopra G, Moch JK, Nerem RR, Cummins B, Roche KE, Kelliher CM, Leman AR, Harer J, Gedeon T, Waters NC, Haase SB. An intrinsic oscillator drives the blood stage cycle of the malaria parasite . Science (New York, N.Y.). 368: 754-759. PMID 32409472 DOI: 10.1126/science.aba4357  1
2019 Cho CY, Kelliher CM, Haase SB. The Cell-Cycle Transcriptional Network Generates and Transmits a Pulse of Transcription Once Each Cell Cycle. Cell Cycle (Georgetown, Tex.). PMID 30668223 DOI: 10.1080/15384101.2019.1570655  1
2018 Kelliher CM, Foster MW, Motta FC, Deckard A, Soderblom EJ, Moseley MA, Haase SB. Layers of regulation on cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae. Molecular Biology of the Cell. mbcE18040255. PMID 30207828 DOI: 10.1091/mbc.E18-04-0255  1
2017 Cho CY, Motta FC, Kelliher CM, Deckard A, Haase SB. Reconciling conflicting models for global control of cell-cycle transcription. Cell Cycle (Georgetown, Tex.). 1-14. PMID 28934013 DOI: 10.1080/15384101.2017.1367073  1
2017 Kelliher CM, Haase SB. Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans. Current Genetics. PMID 28265742 DOI: 10.1007/s00294-017-0688-5  1
2016 Kelliher CM, Leman AR, Sierra CS, Haase SB. Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans. Plos Genetics. 12: e1006453. PMID 27918582 DOI: 10.1371/journal.pgen.1006453  1
2016 McGoff KA, Guo X, Deckard A, Kelliher CM, Leman AR, Francey LJ, Hogenesch JB, Haase SB, Harer JL. The Local Edge Machine: inference of dynamic models of gene regulation. Genome Biology. 17: 214. PMID 27760556 DOI: 10.1186/s13059-016-1076-z  1
2015 Perea JA, Deckard A, Haase SB, Harer J. SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. Bmc Bioinformatics. 16: 257. PMID 26277424 DOI: 10.1186/s12859-015-0645-6  1
2014 Bristow SL, Leman AR, Simmons Kovacs LA, Deckard A, Harer J, Haase SB. Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. Genome Biology. 15: 446. PMID 25200947 DOI: 10.1186/s13059-014-0446-7  1
2014 Leman AR, Bristow SL, Haase SB. Analyzing transcription dynamics during the budding yeast cell cycle. Methods in Molecular Biology (Clifton, N.J.). 1170: 295-312. PMID 24906319 DOI: 10.1007/978-1-4939-0888-2_14  1
2014 Bristow SL, Leman AR, Haase SB. Cell cycle-regulated transcription: effectively using a genomics toolbox. Methods in Molecular Biology (Clifton, N.J.). 1170: 3-27. PMID 24906306 DOI: 10.1007/978-1-4939-0888-2_1  1
2014 Haase SB, Wittenberg C. Topology and control of the cell-cycle-regulated transcriptional circuitry. Genetics. 196: 65-90. PMID 24395825 DOI: 10.1534/genetics.113.152595  1
2013 Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J. Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England). 29: 3174-80. PMID 24058056 DOI: 10.1093/bioinformatics/btt541  1
2013 Guo X, Bernard A, Orlando DA, Haase SB, Hartemink AJ. Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. Proceedings of the National Academy of Sciences of the United States of America. 110: E968-77. PMID 23388635 DOI: 10.1073/pnas.1120991110  1
2012 Chee MK, Haase SB. New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae. G3 (Bethesda, Md.). 2: 515-26. PMID 22670222 DOI: 10.1534/g3.111.001917  1
2012 Ho HJ, Lin TI, Chang HH, Haase SB, Huang S, Pyne S. Parametric modeling of cellular state transitions as measured with flow cytometry. Bmc Bioinformatics. 13: S5. PMID 22537009 DOI: 10.1186/1471-2105-13-S5-S5  1
2012 Simmons Kovacs LA, Mayhew MB, Orlando DA, Jin Y, Li Q, Huang C, Reed SI, Mukherjee S, Haase SB. Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Molecular Cell. 45: 669-79. PMID 22306294 DOI: 10.1016/j.molcel.2011.12.033  1
2012 Mayhew MB, Guo X, Haase SB, Hartemink AJ. Close encounters of the collaborative kind Computer. 45: 24-30. DOI: 10.1109/MC.2012.85  1
2011 Mayhew MB, Robinson JW, Jung B, Haase SB, Hartemink AJ. A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinformatics (Oxford, England). 27: i295-303. PMID 21685084 DOI: 10.1093/bioinformatics/btr244  1
2010 Chee MK, Haase SB. B-cyclin/CDKs regulate mitotic spindle assembly by phosphorylating kinesins-5 in budding yeast. Plos Genetics. 6: e1000935. PMID 20463882 DOI: 10.1371/journal.pgen.1000935  1
2010 Simmons Kovacs LA, Haase SB. Cohesin: it's not just for chromosomes anymore. Cell Cycle (Georgetown, Tex.). 9: 1750-3. PMID 20436287 DOI: 10.4161/cc.9.9.11792  1
2009 Orlando DA, Iversen ES, Hartemink AJ, Haase SB. A branching process model for flow cytometry and budding index measurements in cell synchrony experiments. The Annals of Applied Statistics. 3: 1521-1541. PMID 21853014 DOI: 10.1214/09-AOAS264  1
2008 Simmons Kovacs LA, Orlando DA, Haase SB. Transcription networks and cyclin/CDKs: the yin and yang of cell cycle oscillators. Cell Cycle (Georgetown, Tex.). 7: 2626-9. PMID 18758238  1
2008 Simmons Kovacs LA, Nelson CL, Haase SB. Intrinsic and cyclin-dependent kinase-dependent control of spindle pole body duplication in budding yeast. Molecular Biology of the Cell. 19: 3243-53. PMID 18480404 DOI: 10.1091/mbc.E08-02-0148  1
2008 Orlando DA, Lin CY, Bernard A, Wang JY, Socolar JE, Iversen ES, Hartemink AJ, Haase SB. Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature. 453: 944-7. PMID 18463633 DOI: 10.1038/nature06955  1
2007 Haase SB, Lew DJ. Microtubule organization: cell shape is destiny. Current Biology : Cb. 17: R249-51. PMID 17407755 DOI: 10.1016/j.cub.2007.02.003  1
2007 Orlando DA, Lin CY, Bernard A, Iversen ES, Hartemink AJ, Haase SB. A probabilistic model for cell cycle distributions in synchrony experiments. Cell Cycle (Georgetown, Tex.). 6: 478-88. PMID 17329975  1
2006 Jackson LP, Reed SI, Haase SB. Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6 Molecular and Cellular Biology. 26: 2456-2466. PMID 16508019 DOI: 10.1128/MCB.26.6.2456-2466.2006  1
2002 Haase SB, Reed SI. Improved flow cytometric analysis of the budding yeast cell cycle. Cell Cycle (Georgetown, Tex.). 1: 132-6. PMID 12429922  0.96
2002 Haase SB, Clarke DJ. A festival of cell-cycle controls. Trends in Cell Biology. 11: 445-6. PMID 11684413 DOI: 10.1016/S0962-8924(01)02088-8  0.4
2001 Haase SB, Winey M, Reed SI. Multi-step control of spindle pole body duplication by cyclin-dependent kinase. Nature Cell Biology. 3: 38-42. PMID 11146624 DOI: 10.1038/35050543  1
1999 Haase SB, Reed SI. Evidence that a free-running oscillator drives G1 events in the budding yeast cell cycle. Nature. 401: 394-7. PMID 10517640 DOI: 10.1038/43927  0.76
1997 Haase SB, Lew DJ. Flow cytometric analysis of DNA content in budding yeast. Methods in Enzymology. 283: 322-32. PMID 9251030 DOI: 10.1016/S0076-6879(97)83026-1  1
1994 Haase SB, Heinzel SS, Calos MP. Transcription inhibits the replication of autonomously replicating plasmids in human cells. Molecular and Cellular Biology. 14: 2516-24. PMID 8139554 DOI: 10.1128/MCB.14.4.2516  0.84
1991 Haase SB, Calos MP. Replication control of autonomously replicating human sequences. Nucleic Acids Research. 19: 5053-8. PMID 1656387 DOI: 10.1093/nar/19.18.5053  0.68
1989 Krysan PJ, Haase SB, Calos MP. Isolation of human sequences that replicate autonomously in human cells. Molecular and Cellular Biology. 9: 1026-33. PMID 2542763 DOI: 10.1128/MCB.9.3.1026  0.84
1989 Haase SB, Heinzel SS, Krysan PJ, Calos MP. Improved EBV shuttle vectors. Mutation Research. 220: 125-32. PMID 2538736 DOI: 10.1016/0165-1110(89)90018-3  0.88
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